HEADER OXIDOREDUCTASE 15-OCT-03 1UQ2 TITLE REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, MODELS 281- TITLE 2 350. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 1; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX1; COMPND 5 OTHER_DETAILS: MODEL, 350 STRUCTURES FROM 75 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 70 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UPY, 1UPZ, 1UQ0 AND 1UQ1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 1EGR KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS EXPDTA THEORETICAL MODEL AUTHOR N.FOLOPPE,L.NILSSON REVDAT 2 19-FEB-04 1UQ2 1 JRNL REVDAT 1 06-NOV-03 1UQ2 0 JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UQ2 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13721. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 5 OF 5 (350 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS 70 MODELS OF THE TIME COURSE MD REMARK 400 SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UPY : MODELS REMARK 400 1 - 70 1UPZ : MODELS 71 - 140 1UQ0 : MODELS 141 - 210 1UQ2 REMARK 400 : MODELS 211 - 280 FUNCTION: THE DISULFIDE BOND FUNCTIONS REMARK 400 AS AN ELECTRON CARRIER IN THE GLUTATHIONE-DEPENDENT REMARK 400 SYNTHESIS OF DEOXYRIBONUCLEOTIDES BY T ENZYME REMARK 400 RIBONUCLEOTIDE REDUCTASE. IN ADDITION, IT IS ALSO INVOLVE REMARK 400 IN REDUCING SOME DISULFIDES IN A COUPLED SYSTEM WITH REMARK 400 GLUTATHIONE REDUCTASE. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 281 ASP G 65 -96.56 57.59 REMARK 500 282 ASP G 65 -110.48 63.38 REMARK 500 283 ASP G 65 -89.81 55.62 REMARK 500 284 ASP G 65 -101.06 59.90 REMARK 500 285 ASP G 65 -107.78 45.34 REMARK 500 286 ASP G 65 -111.22 58.97 REMARK 500 287 ASP G 65 -91.17 50.18 REMARK 500 288 ASP G 65 -99.48 62.00 REMARK 500 290 ASP G 65 -103.24 66.87 REMARK 500 291 ASP G 65 -96.57 47.86 REMARK 500 292 ASP G 65 -108.46 72.50 REMARK 500 293 ASP G 65 -100.28 58.00 REMARK 500 294 ASP G 65 -103.89 67.40 REMARK 500 295 ASP G 65 -95.63 45.68 REMARK 500 296 ASP G 65 -114.22 47.02 REMARK 500 297 ASP G 65 -103.60 51.21 REMARK 500 298 ASP G 65 -83.42 50.65 REMARK 500 299 ASP G 65 -91.79 62.43 REMARK 500 300 ASP G 65 -95.50 58.45 REMARK 500 301 ASP G 65 -104.46 46.06 REMARK 500 302 ASP G 65 -83.17 65.01 REMARK 500 303 ASP G 65 -106.78 60.41 REMARK 500 304 ASP G 65 -80.58 62.73 REMARK 500 305 ASP G 65 -103.28 58.11 REMARK 500 306 ASP G 65 -80.66 65.62 REMARK 500 307 ASP G 65 -96.98 57.81 REMARK 500 308 ASP G 65 -105.72 54.32 REMARK 500 309 ASP G 65 -104.40 66.77 REMARK 500 310 ASP G 65 -92.35 66.45 REMARK 500 311 ASP G 65 -100.23 51.86 REMARK 500 312 ASP G 65 -99.50 47.95 REMARK 500 313 ASP G 65 -75.00 62.55 REMARK 500 314 ASP G 65 -100.13 65.06 REMARK 500 315 ASP G 65 -98.79 66.92 REMARK 500 316 ASP G 65 -99.34 51.91 REMARK 500 317 ASP G 65 -100.58 58.01 REMARK 500 318 ASP G 65 -85.37 66.63 REMARK 500 319 ASP G 65 -116.86 58.45 REMARK 500 320 ASP G 65 -80.93 40.66 REMARK 500 321 ASP G 65 -95.86 63.10 REMARK 500 322 ASP G 65 -91.68 30.06 REMARK 500 323 ASP G 65 -110.03 56.70 REMARK 500 324 ASP G 65 -114.60 76.01 REMARK 500 325 ASP G 65 -88.82 56.26 REMARK 500 326 ASP G 65 -67.48 69.74 REMARK 500 327 ASP G 65 -101.68 72.84 REMARK 500 328 ASP G 65 -110.14 68.80 REMARK 500 329 ASP G 65 -97.77 63.92 REMARK 500 330 ASP G 65 -98.67 47.78 REMARK 500 331 ASP G 65 -100.99 54.83 REMARK 500 332 ASP G 65 -94.39 71.21 REMARK 500 334 ASP G 65 -111.87 65.18 REMARK 500 335 ASP G 65 -107.06 75.89 REMARK 500 336 ASP G 65 -100.14 56.66 REMARK 500 337 ASP G 65 -104.18 65.07 REMARK 500 338 ASP G 65 -98.03 58.06 REMARK 500 339 ASP G 65 -92.96 54.25 REMARK 500 340 ASP G 65 -107.30 58.06 REMARK 500 341 ASP G 65 -90.76 62.68 REMARK 500 342 ASP G 65 -100.24 62.34 REMARK 500 343 ASP G 65 -101.65 61.73 REMARK 500 344 ASP G 65 -87.59 55.57 REMARK 500 345 ASP G 65 -104.84 70.85 REMARK 500 346 ASP G 65 -97.87 66.76 REMARK 500 347 ASP G 65 -107.55 59.91 REMARK 500 348 ASP G 65 -109.61 61.39 REMARK 500 350 ASP G 65 -93.45 61.26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU G 83 ASP G 84 296 -144.69 REMARK 500 THR G 58 VAL G 59 308 146.93 REMARK 500 GLU G 27 ARG G 28 323 -147.05 REMARK 500 ALA G 52 GLY G 53 327 -149.46 REMARK 500 CYS G 11 PRO G 12 328 149.43 REMARK 500 LYS G 80 GLU G 81 339 -149.81 REMARK 500 TYR G 33 GLN G 34 344 145.67 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE REMARK 800 THE ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EGO RELATED DB: PDB REMARK 900 GLUTAREDOXIN (OXIDIZED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1EGR RELATED DB: PDB REMARK 900 GLUTAREDOXIN (REDUCED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1GRX RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI GLUTAREDOXIN REMARK 900 RELATED ID: 1QFN RELATED DB: PDB REMARK 900 GLUTAREDOXIN-1-RIBONUCLEOTIDE REDUCTASE B1 REMARK 900 MIXED DISULFIDE BOND REMARK 900 RELATED ID: 1UPY RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UPZ RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 71-140 REMARK 900 RELATED ID: 1UQ0 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ1 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 REMARK 900 RELATED ID: 1UQ3 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ6 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ7 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 DBREF 1UQ2 G 1 85 UNP P00277 GLR1_ECOLI 1 85 SEQRES 1 G 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 G 85 CYS VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 G 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 G 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 G 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 G 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 G 85 VAL LYS GLU ASN LEU ASP ALA HELIX 1 1 PRO G 12 ARG G 28 1 17 HELIX 2 2 ILE G 38 GLY G 42 1 5 HELIX 3 3 THR G 44 ALA G 52 1 9 HELIX 4 4 GLY G 71 VAL G 79 1 9 SHEET 1 GA 4 GLN G 32 ASP G 37 0 SHEET 2 GA 4 GLN G 2 GLY G 7 1 O THR G 3 N GLN G 34 SHEET 3 GA 4 GLN G 61 VAL G 64 -1 O GLN G 61 N PHE G 6 SHEET 4 GA 4 GLN G 67 GLY G 70 -1 O GLN G 67 N VAL G 64 CISPEP 1 VAL G 59 PRO G 60 281 22.76 CISPEP 2 VAL G 59 PRO G 60 282 15.54 CISPEP 3 VAL G 59 PRO G 60 283 -2.05 CISPEP 4 VAL G 59 PRO G 60 284 -2.48 CISPEP 5 VAL G 59 PRO G 60 285 -1.02 CISPEP 6 VAL G 59 PRO G 60 286 26.69 CISPEP 7 VAL G 59 PRO G 60 287 12.44 CISPEP 8 VAL G 59 PRO G 60 288 5.33 CISPEP 9 VAL G 59 PRO G 60 289 -3.19 CISPEP 10 VAL G 59 PRO G 60 290 -17.47 CISPEP 11 VAL G 59 PRO G 60 291 5.24 CISPEP 12 VAL G 59 PRO G 60 292 -0.74 CISPEP 13 VAL G 59 PRO G 60 293 1.47 CISPEP 14 VAL G 59 PRO G 60 294 -5.81 CISPEP 15 VAL G 59 PRO G 60 295 10.32 CISPEP 16 VAL G 59 PRO G 60 296 -4.25 CISPEP 17 VAL G 59 PRO G 60 297 -1.17 CISPEP 18 VAL G 59 PRO G 60 298 9.49 CISPEP 19 VAL G 59 PRO G 60 299 7.09 CISPEP 20 VAL G 59 PRO G 60 300 -26.88 CISPEP 21 VAL G 59 PRO G 60 301 -14.14 CISPEP 22 VAL G 59 PRO G 60 302 -12.51 CISPEP 23 VAL G 59 PRO G 60 303 -8.31 CISPEP 24 VAL G 59 PRO G 60 304 -18.20 CISPEP 25 VAL G 59 PRO G 60 305 -4.16 CISPEP 26 VAL G 59 PRO G 60 306 5.83 CISPEP 27 VAL G 59 PRO G 60 307 1.44 CISPEP 28 VAL G 59 PRO G 60 308 12.11 CISPEP 29 VAL G 59 PRO G 60 309 -0.64 CISPEP 30 VAL G 59 PRO G 60 310 -16.19 CISPEP 31 VAL G 59 PRO G 60 311 18.05 CISPEP 32 VAL G 59 PRO G 60 312 -3.60 CISPEP 33 VAL G 59 PRO G 60 313 -11.12 CISPEP 34 VAL G 59 PRO G 60 314 -14.00 CISPEP 35 VAL G 59 PRO G 60 315 -13.77 CISPEP 36 VAL G 59 PRO G 60 316 -23.85 CISPEP 37 VAL G 59 PRO G 60 317 -10.95 CISPEP 38 VAL G 59 PRO G 60 318 -12.14 CISPEP 39 VAL G 59 PRO G 60 319 -13.05 CISPEP 40 VAL G 59 PRO G 60 320 3.86 CISPEP 41 VAL G 59 PRO G 60 321 -16.42 CISPEP 42 VAL G 59 PRO G 60 322 -19.95 CISPEP 43 VAL G 59 PRO G 60 323 -12.29 CISPEP 44 VAL G 59 PRO G 60 324 1.61 CISPEP 45 VAL G 59 PRO G 60 325 -8.93 CISPEP 46 VAL G 59 PRO G 60 326 -5.25 CISPEP 47 VAL G 59 PRO G 60 327 -29.91 CISPEP 48 VAL G 59 PRO G 60 328 -17.97 CISPEP 49 VAL G 59 PRO G 60 329 7.57 CISPEP 50 VAL G 59 PRO G 60 330 -16.68 CISPEP 51 VAL G 59 PRO G 60 331 -17.03 CISPEP 52 VAL G 59 PRO G 60 332 1.43 CISPEP 53 VAL G 59 PRO G 60 333 13.32 CISPEP 54 VAL G 59 PRO G 60 334 -1.29 CISPEP 55 VAL G 59 PRO G 60 335 -2.60 CISPEP 56 VAL G 59 PRO G 60 336 -4.67 CISPEP 57 VAL G 59 PRO G 60 337 10.76 CISPEP 58 VAL G 59 PRO G 60 338 6.32 CISPEP 59 VAL G 59 PRO G 60 339 14.08 CISPEP 60 VAL G 59 PRO G 60 340 -3.51 CISPEP 61 VAL G 59 PRO G 60 341 7.10 CISPEP 62 VAL G 59 PRO G 60 342 17.17 CISPEP 63 VAL G 59 PRO G 60 343 1.42 CISPEP 64 VAL G 59 PRO G 60 344 -0.84 CISPEP 65 VAL G 59 PRO G 60 345 9.52 CISPEP 66 VAL G 59 PRO G 60 346 6.31 CISPEP 67 VAL G 59 PRO G 60 347 2.81 CISPEP 68 VAL G 59 PRO G 60 348 2.86 CISPEP 69 VAL G 59 PRO G 60 349 -13.24 CISPEP 70 VAL G 59 PRO G 60 350 -8.16 SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 168 0 0 4 4 0 1 6 0 0 0 7 END