HEADER OXIDOREDUCTASE 15-OCT-03 1UPY TITLE REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, MODELS 1-70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 1; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX1; COMPND 5 OTHER_DETAILS: MODEL, 350 STRUCTURES FROM 75 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 70 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UPZ, 1UQ0, 1UQ1 AND 1UQ2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 1EGR KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS EXPDTA THEORETICAL MODEL AUTHOR N.FOLOPPE,L.NILSSON REVDAT 3 19-FEB-04 1UPY 1 JRNL REVDAT 2 16-JAN-04 1UPY 1 REMARK REVDAT 1 06-NOV-03 1UPY 0 JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UPY COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 15-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13702. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 1 OF 5 (350 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS THE FIRST 70 MODELS OF THE TIME COURSE REMARK 400 MD SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UPZ : REMARK 400 MODELS 71 - 140 1UQ0 : MODELS 141 - 210 1UQ1 : MODELS 211 - REMARK 400 280 1UQ2 : MODELS 281 - 350 FUNCTION: THE DISULFIDE BOND REMARK 400 FUNCTIONS AS AN ELECTRON CARRIER IN THE GLUTATHIONE- REMARK 400 DEPENDENT SYNTHESIS OF DEOXYRIBONUCLEOTIDES BY T ENZYME REMARK 400 RIBONUCLEOTIDE REDUCTASE. IN ADDITION, IT IS ALSO INVOLVE REMARK 400 IN REDUCING SOME DISULFIDES IN A COUPLED SYSTEM WITH REMARK 400 GLUTATHIONE REDUCTASE. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP G 65 -84.16 50.18 REMARK 500 2 ASP G 65 -95.48 65.72 REMARK 500 4 ASP G 65 -117.73 49.55 REMARK 500 5 ASP G 65 -101.06 58.23 REMARK 500 6 ASP G 65 -110.79 63.84 REMARK 500 7 ASP G 65 -108.23 55.25 REMARK 500 8 ASP G 65 -103.19 63.64 REMARK 500 9 ASP G 65 -117.28 63.32 REMARK 500 10 ASP G 65 -108.92 56.17 REMARK 500 11 ASP G 65 -117.54 46.46 REMARK 500 12 ASP G 65 -106.21 48.41 REMARK 500 13 ASP G 65 -85.51 59.87 REMARK 500 14 ASP G 65 -108.20 54.82 REMARK 500 15 ASP G 65 -93.35 51.38 REMARK 500 16 ASP G 65 -110.34 53.53 REMARK 500 17 ASP G 65 -89.79 49.89 REMARK 500 18 ASP G 65 -107.87 49.36 REMARK 500 19 ASP G 65 -104.50 65.55 REMARK 500 20 ASP G 65 -88.18 36.15 REMARK 500 21 ASP G 65 -79.45 46.86 REMARK 500 22 ASP G 65 -99.11 46.82 REMARK 500 23 ASP G 65 -82.33 47.98 REMARK 500 24 ASP G 65 -54.53 50.74 REMARK 500 25 ASP G 65 -92.03 57.88 REMARK 500 26 ASP G 65 -91.40 65.35 REMARK 500 27 ASP G 65 -91.32 63.05 REMARK 500 28 ASP G 65 -105.21 76.49 REMARK 500 29 ASP G 65 -103.84 62.80 REMARK 500 30 ASP G 65 -102.49 61.70 REMARK 500 31 ASP G 65 -90.50 57.39 REMARK 500 32 ASP G 65 -101.68 61.10 REMARK 500 33 ASP G 65 -95.81 54.50 REMARK 500 34 ASP G 65 -89.46 51.58 REMARK 500 36 ASP G 65 -89.35 42.98 REMARK 500 37 ASP G 65 -119.08 69.73 REMARK 500 38 ASP G 65 -100.02 57.13 REMARK 500 39 ASP G 65 -89.99 49.49 REMARK 500 40 ASP G 65 -96.50 53.52 REMARK 500 41 ASP G 65 -105.07 68.45 REMARK 500 42 ASP G 65 -100.55 54.97 REMARK 500 43 ASP G 65 -88.04 48.55 REMARK 500 44 ASP G 65 -118.56 48.57 REMARK 500 45 ASP G 65 -119.62 86.06 REMARK 500 46 ASP G 65 -107.36 60.77 REMARK 500 47 ASP G 65 -84.37 48.49 REMARK 500 48 ASP G 65 -88.43 50.92 REMARK 500 49 ASP G 65 -96.18 61.20 REMARK 500 50 ASP G 65 -115.77 52.47 REMARK 500 51 ASP G 65 -118.91 59.27 REMARK 500 52 ASP G 65 -84.81 65.30 REMARK 500 53 ASP G 65 -117.73 63.70 REMARK 500 54 ASP G 65 -99.33 51.05 REMARK 500 55 ASP G 65 -89.94 61.54 REMARK 500 56 ASP G 65 -109.42 72.36 REMARK 500 57 ASP G 65 -98.26 63.46 REMARK 500 58 ASP G 65 -89.87 57.41 REMARK 500 59 ASP G 65 -78.94 48.07 REMARK 500 60 ASP G 65 -99.97 47.15 REMARK 500 61 ASP G 65 -103.83 53.42 REMARK 500 62 ASP G 65 -97.77 48.68 REMARK 500 63 ASP G 65 -77.91 54.87 REMARK 500 64 ASP G 65 -111.39 53.24 REMARK 500 65 ASP G 65 -109.12 57.94 REMARK 500 66 ASP G 65 -104.95 68.28 REMARK 500 67 ASP G 65 -86.39 66.06 REMARK 500 68 ASP G 65 -116.35 67.22 REMARK 500 69 ASP G 65 -92.71 80.61 REMARK 500 70 ASP G 65 -105.76 47.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN G 66 GLN G 67 3 -148.71 REMARK 500 PHE G 63 VAL G 64 14 148.42 REMARK 500 GLU G 27 ARG G 28 16 -145.05 REMARK 500 PHE G 63 VAL G 64 16 149.12 REMARK 500 TYR G 33 GLN G 34 31 149.60 REMARK 500 GLU G 81 ASN G 82 33 -134.64 REMARK 500 ASP G 84 ALA G 85 34 148.86 REMARK 500 PRO G 60 GLN G 61 35 149.79 REMARK 500 VAL G 59 PRO G 60 44 -35.01 REMARK 500 VAL G 59 PRO G 60 52 -37.60 REMARK 500 PHE G 31 GLN G 32 54 148.96 REMARK 500 PRO G 60 GLN G 61 58 146.00 REMARK 500 ALA G 52 GLY G 53 64 -148.72 REMARK 500 PRO G 12 TYR G 13 67 -147.96 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE REMARK 800 THE ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EGO RELATED DB: PDB REMARK 900 GLUTAREDOXIN (OXIDIZED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1EGR RELATED DB: PDB REMARK 900 GLUTAREDOXIN (REDUCED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1GRX RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI GLUTAREDOXIN REMARK 900 RELATED ID: 1QFN RELATED DB: PDB REMARK 900 GLUTAREDOXIN-1-RIBONUCLEOTIDE REDUCTASE B1 REMARK 900 MIXED DISULFIDE BOND REMARK 900 RELATED ID: 1UPZ RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 71-140 REMARK 900 RELATED ID: 1UQ0 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ1 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 REMARK 900 RELATED ID: 1UQ2 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 281-350 REMARK 900 RELATED ID: 1UQ3 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ6 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ7 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 DBREF 1UPY G 1 85 UNP P00277 GLR1_ECOLI 1 85 SEQRES 1 G 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 G 85 CYS VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 G 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 G 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 G 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 G 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 G 85 VAL LYS GLU ASN LEU ASP ALA HELIX 1 1 CYS G 11 ARG G 28 1 18 HELIX 2 2 THR G 44 GLN G 49 1 6 HELIX 3 3 GLY G 71 LEU G 83 1 13 SHEET 1 GA 4 GLN G 32 VAL G 36 0 SHEET 2 GA 4 GLN G 2 PHE G 6 1 O THR G 3 N GLN G 34 SHEET 3 GA 4 GLN G 61 VAL G 64 -1 O GLN G 61 N PHE G 6 SHEET 4 GA 4 GLN G 67 GLY G 70 -1 O GLN G 67 N VAL G 64 CISPEP 1 VAL G 59 PRO G 60 1 -15.44 CISPEP 2 VAL G 59 PRO G 60 2 -4.09 CISPEP 3 VAL G 59 PRO G 60 3 -2.65 CISPEP 4 VAL G 59 PRO G 60 4 -9.87 CISPEP 5 VAL G 59 PRO G 60 5 -11.27 CISPEP 6 VAL G 59 PRO G 60 6 -22.32 CISPEP 7 VAL G 59 PRO G 60 7 8.80 CISPEP 8 VAL G 59 PRO G 60 8 -15.76 CISPEP 9 VAL G 59 PRO G 60 9 -0.81 CISPEP 10 VAL G 59 PRO G 60 10 -16.12 CISPEP 11 VAL G 59 PRO G 60 11 5.19 CISPEP 12 VAL G 59 PRO G 60 12 -11.27 CISPEP 13 VAL G 59 PRO G 60 13 -2.63 CISPEP 14 VAL G 59 PRO G 60 14 -0.81 CISPEP 15 VAL G 59 PRO G 60 15 -4.24 CISPEP 16 VAL G 59 PRO G 60 16 -26.18 CISPEP 17 VAL G 59 PRO G 60 17 -0.56 CISPEP 18 VAL G 59 PRO G 60 18 -5.03 CISPEP 19 VAL G 59 PRO G 60 19 -19.32 CISPEP 20 VAL G 59 PRO G 60 20 -9.07 CISPEP 21 VAL G 59 PRO G 60 21 -16.19 CISPEP 22 VAL G 59 PRO G 60 22 0.64 CISPEP 23 VAL G 59 PRO G 60 23 -20.36 CISPEP 24 VAL G 59 PRO G 60 24 12.91 CISPEP 25 VAL G 59 PRO G 60 25 -8.25 CISPEP 26 VAL G 59 PRO G 60 26 2.30 CISPEP 27 VAL G 59 PRO G 60 27 24.60 CISPEP 28 VAL G 59 PRO G 60 28 -29.52 CISPEP 29 VAL G 59 PRO G 60 29 -11.82 CISPEP 30 VAL G 59 PRO G 60 30 -5.46 CISPEP 31 VAL G 59 PRO G 60 31 -18.52 CISPEP 32 VAL G 59 PRO G 60 32 -23.74 CISPEP 33 VAL G 59 PRO G 60 33 -17.43 CISPEP 34 VAL G 59 PRO G 60 34 -12.89 CISPEP 35 VAL G 59 PRO G 60 35 -3.41 CISPEP 36 VAL G 59 PRO G 60 36 -0.75 CISPEP 37 VAL G 59 PRO G 60 37 -0.95 CISPEP 38 VAL G 59 PRO G 60 38 -3.82 CISPEP 39 VAL G 59 PRO G 60 39 -11.83 CISPEP 40 VAL G 59 PRO G 60 40 12.38 CISPEP 41 VAL G 59 PRO G 60 41 -17.63 CISPEP 42 VAL G 59 PRO G 60 42 6.61 CISPEP 43 VAL G 59 PRO G 60 43 -15.93 CISPEP 44 VAL G 59 PRO G 60 45 -24.56 CISPEP 45 VAL G 59 PRO G 60 46 -19.13 CISPEP 46 VAL G 59 PRO G 60 47 -12.44 CISPEP 47 VAL G 59 PRO G 60 48 -6.01 CISPEP 48 VAL G 59 PRO G 60 49 -22.65 CISPEP 49 VAL G 59 PRO G 60 50 -26.26 CISPEP 50 VAL G 59 PRO G 60 51 -14.96 CISPEP 51 VAL G 59 PRO G 60 53 -21.39 CISPEP 52 VAL G 59 PRO G 60 54 -29.16 CISPEP 53 VAL G 59 PRO G 60 55 -19.02 CISPEP 54 VAL G 59 PRO G 60 56 -9.10 CISPEP 55 VAL G 59 PRO G 60 57 -14.41 CISPEP 56 VAL G 59 PRO G 60 58 -4.25 CISPEP 57 VAL G 59 PRO G 60 59 -9.12 CISPEP 58 VAL G 59 PRO G 60 60 -4.58 CISPEP 59 VAL G 59 PRO G 60 61 -8.37 CISPEP 60 VAL G 59 PRO G 60 62 -17.57 CISPEP 61 VAL G 59 PRO G 60 63 -5.42 CISPEP 62 VAL G 59 PRO G 60 64 -20.27 CISPEP 63 VAL G 59 PRO G 60 65 -23.68 CISPEP 64 VAL G 59 PRO G 60 66 -13.08 CISPEP 65 VAL G 59 PRO G 60 67 -11.97 CISPEP 66 VAL G 59 PRO G 60 68 -26.62 CISPEP 67 VAL G 59 PRO G 60 69 -17.51 CISPEP 68 VAL G 59 PRO G 60 70 -3.72 SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 176 0 0 3 4 0 1 6 0 0 0 7 END