HEADER SIGNALING PROTEIN 09-SEP-03 1UL3 TITLE CRYSTAL STRUCTURE OF PII FROM SYNECHOCYSTIS SP. PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PII SIGNAL TRANSDUCING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1143; SOURCE 4 GENE: GLNB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAB11 KEYWDS NITROGEN REGULATION, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,P.D.CARR,P.CLANCY,M.GARCIA-DOMINGUEZ,K.FORCHHAMMER,F.FLORENCIO, AUTHOR 2 N.TANDEAU DE MARSAC,S.G.VASUDEVAN,D.L.OLLIS REVDAT 3 13-JUL-11 1UL3 1 VERSN REVDAT 2 24-FEB-09 1UL3 1 VERSN REVDAT 1 16-DEC-03 1UL3 0 JRNL AUTH Y.XU,P.D.CARR,P.CLANCY,M.GARCIA-DOMINGUEZ,K.FORCHHAMMER, JRNL AUTH 2 F.FLORENCIO,S.G.VASUDEVAN,N.TANDEAU DE MARSAC,D.L.OLLIS JRNL TITL THE STRUCTURES OF THE PII PROTEINS FROM THE CYANOBACTERIA JRNL TITL 2 SYNECHOCOCCUS SP. PCC 7942 AND SYNECHOCYSTIS SP. PCC 6803. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 2183 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 14646076 JRNL DOI 10.1107/S0907444903019589 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 30958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2456 REMARK 3 BIN FREE R VALUE : 0.3159 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 2.73000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.64 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.17 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UL3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB005946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.950 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.16700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PII MINUS RESIDUES 37-55 AND 109-112 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, CALCIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.78450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.40335 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.78450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.40335 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.78450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.40335 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.80670 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.55267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.80670 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.55267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.80670 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.55267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAINS A, B, C FORM A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 64.78450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 112.21005 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -64.78450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 112.21005 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 224.42009 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -129.56900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 149.61339 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 24.77633 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -129.56900 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 149.61339 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -49.55267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 THR A 52 REMARK 465 VAL A 53 REMARK 465 GLY B 37 REMARK 465 ARG B 38 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 465 GLU B 44 REMARK 465 ARG B 45 REMARK 465 TYR B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 GLU B 50 REMARK 465 TYR B 51 REMARK 465 THR B 52 REMARK 465 VAL B 53 REMARK 465 GLU B 54 REMARK 465 GLY C 37 REMARK 465 ARG C 38 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 GLY C 41 REMARK 465 GLN C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 ARG C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 SER C 49 REMARK 465 GLU C 50 REMARK 465 TYR C 51 REMARK 465 THR C 52 REMARK 465 VAL C 53 REMARK 465 GLU C 54 REMARK 465 GLN D 39 REMARK 465 LYS D 40 REMARK 465 GLY D 41 REMARK 465 GLN D 42 REMARK 465 THR D 43 REMARK 465 GLU D 44 REMARK 465 ARG D 45 REMARK 465 TYR D 46 REMARK 465 ARG D 47 REMARK 465 GLY D 48 REMARK 465 SER D 49 REMARK 465 GLU D 50 REMARK 465 TYR D 51 REMARK 465 THR D 52 REMARK 465 VAL D 53 REMARK 465 ALA D 111 REMARK 465 ILE D 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 3.63 -69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 162 DISTANCE = 5.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 14 OD2 REMARK 620 2 PHE B 11 O 113.4 REMARK 620 3 ASP B 14 OD1 45.4 85.1 REMARK 620 4 GLU B 15 OE2 110.6 80.6 71.5 REMARK 620 5 PHE D 11 O 65.2 173.1 89.6 93.5 REMARK 620 6 ASP D 14 OD1 93.2 89.2 129.4 156.1 97.6 REMARK 620 7 ASP D 14 OD2 57.7 73.3 78.0 141.3 109.9 52.4 REMARK 620 8 GLU D 15 OE1 159.3 87.2 141.7 70.2 94.2 87.9 134.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE C 11 O REMARK 620 2 ASP C 14 OD1 91.6 REMARK 620 3 ASP C 14 OD2 107.8 44.1 REMARK 620 4 GLU C 15 OE2 91.7 86.3 125.3 REMARK 620 5 ASP A 14 OD1 87.1 121.9 81.4 151.9 REMARK 620 6 ASP A 14 OD2 66.7 82.9 56.5 155.5 44.0 REMARK 620 7 GLU A 15 OE1 106.5 152.9 139.7 73.5 79.8 122.5 REMARK 620 8 PHE A 11 O 174.3 82.7 68.0 87.8 95.9 112.4 78.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PII RELATED DB: PDB REMARK 900 SAME PROTEIN FROM E.COLI REMARK 900 RELATED ID: 1HWU RELATED DB: PDB REMARK 900 SAME PROTEIN FROM HERBASPIRILLUM SEROPEDICAE DBREF 1UL3 A 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 B 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 C 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 D 1 112 UNP Q55247 GLNB_SYNY3 1 112 SEQRES 1 A 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 A 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 A 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 A 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 A 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 B 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 B 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 B 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 B 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 B 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 C 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 C 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 C 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 C 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 C 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 C 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 D 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 D 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 D 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 D 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 D 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 D 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 D 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 D 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 D 112 GLY GLU LYS ASP THR GLU ALA ILE HET CA C 601 1 HET CA B 602 1 HET GOL A 500 6 HET GOL C 501 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA 2(CA 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *212(H2 O) HELIX 1 1 ARG A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 ASN A 22 1 11 HELIX 3 3 ASP A 66 GLY A 68 5 3 HELIX 4 4 GLN A 69 ARG A 82 1 14 HELIX 5 5 ARG B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 ASN B 22 1 11 HELIX 7 7 ASP B 66 GLY B 68 5 3 HELIX 8 8 GLN B 69 ARG B 82 1 14 HELIX 9 9 ARG C 9 PHE C 11 5 3 HELIX 10 10 LYS C 12 ALA C 23 1 12 HELIX 11 11 ASP C 66 GLY C 68 5 3 HELIX 12 12 GLN C 69 ARG C 82 1 14 HELIX 13 13 ARG D 9 PHE D 11 5 3 HELIX 14 14 LYS D 12 ALA D 23 1 12 HELIX 15 15 ASP D 66 GLY D 68 5 3 HELIX 16 16 GLN D 69 ARG D 82 1 14 SHEET 1 A25 LYS A 107 THR A 109 0 SHEET 2 A25 SER A 98 ARG A 101 -1 O VAL A 99 N ASP A 108 SHEET 3 A25 LYS B 90 PRO B 95 -1 O ILE B 91 N VAL A 100 SHEET 4 A25 LYS B 2 ILE B 8 -1 N LYS B 3 O SER B 94 SHEET 5 A25 LEU B 56 VAL B 65 -1 N LEU B 59 O ILE B 8 SHEET 6 A25 MET B 28 PHE B 36 -1 O THR B 29 N GLU B 62 SHEET 7 A25 MET A 28 GLY A 35 -1 O MET A 28 N PHE B 36 SHEET 8 A25 THR C 29 PHE C 36 1 N VAL C 30 O ARG A 34 SHEET 9 A25 LEU C 56 VAL C 65 -1 O LEU C 56 N GLY C 35 SHEET 10 A25 LYS C 2 ILE C 8 -1 N LYS C 2 O VAL C 65 SHEET 11 A25 LYS C 90 PRO C 95 -1 O LYS C 90 N ILE C 7 SHEET 12 A25 SER B 98 ARG B 101 -1 O SER B 98 N ILE C 93 SHEET 13 A25 GLU B 106 THR B 109 -1 O GLU B 106 N ARG B 101 SHEET 14 A25 SER B 98 ARG B 101 -1 O VAL B 99 N ASP B 108 SHEET 15 A25 LYS C 90 PRO C 95 -1 O ILE C 91 N VAL B 100 SHEET 16 A25 LYS C 2 ILE C 8 -1 N LYS C 3 O SER C 94 SHEET 17 A25 LEU C 56 VAL C 65 -1 O LEU C 59 N ILE C 8 SHEET 18 A25 THR C 29 PHE C 36 -1 O THR C 29 N GLU C 62 SHEET 19 A25 MET B 28 PHE B 36 -1 O MET B 28 N PHE C 36 SHEET 20 A25 MET A 28 GLY A 35 -1 O MET A 28 N PHE B 36 SHEET 21 A25 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 22 A25 LYS A 2 ILE A 8 -1 N LYS A 2 O VAL A 65 SHEET 23 A25 LYS A 90 PRO A 95 -1 O LYS A 90 N ILE A 7 SHEET 24 A25 SER C 98 ARG C 101 -1 O SER C 98 N ILE A 93 SHEET 25 A25 GLU C 106 THR C 109 -1 O GLU C 106 N ARG C 101 SHEET 1 B 4 THR D 29 PHE D 36 0 SHEET 2 B 4 PHE D 55 VAL D 65 -1 O LEU D 56 N GLY D 35 SHEET 3 B 4 LYS D 2 ILE D 8 -1 N LYS D 2 O VAL D 65 SHEET 4 B 4 LYS D 90 PRO D 95 -1 O LYS D 90 N ILE D 7 SHEET 1 C 2 VAL D 99 VAL D 100 0 SHEET 2 C 2 LYS D 107 ASP D 108 -1 N ASP D 108 O VAL D 99 LINK CA CA B 602 OD2 ASP B 14 1555 1555 3.06 LINK CA CA B 602 O PHE B 11 1555 1555 2.45 LINK CA CA B 602 OD1 ASP B 14 1555 1555 2.38 LINK CA CA B 602 OE2AGLU B 15 1555 1555 2.22 LINK CA CA C 601 O PHE C 11 1555 1555 2.27 LINK CA CA C 601 OD1 ASP C 14 1555 1555 2.31 LINK CA CA C 601 OD2 ASP C 14 1555 1555 3.16 LINK CA CA C 601 OE2AGLU C 15 1555 1555 2.21 LINK CA CA B 602 O PHE D 11 1555 5564 2.25 LINK CA CA B 602 OD1 ASP D 14 1555 5564 2.04 LINK CA CA B 602 OD2 ASP D 14 1555 5564 2.72 LINK CA CA B 602 OE1AGLU D 15 1555 5564 2.64 LINK CA CA C 601 OD1 ASP A 14 1555 6465 2.24 LINK CA CA C 601 OD2 ASP A 14 1555 6465 3.15 LINK CA CA C 601 OE1AGLU A 15 1555 6465 2.12 LINK CA CA C 601 O PHE A 11 1555 6465 2.31 SITE 1 AC1 6 PHE A 11 ASP A 14 GLU A 15 PHE C 11 SITE 2 AC1 6 ASP C 14 GLU C 15 SITE 1 AC2 6 PHE B 11 ASP B 14 GLU B 15 PHE D 11 SITE 2 AC2 6 ASP D 14 GLU D 15 SITE 1 AC3 7 PHE A 36 LYS A 58 GLY A 89 LYS A 90 SITE 2 AC3 7 HOH A 525 HOH A 526 MET C 28 SITE 1 AC4 7 LYS A 90 PHE A 92 VAL C 26 GLY C 27 SITE 2 AC4 7 ILE C 63 VAL C 64 HOH C 627 CRYST1 129.569 129.569 74.329 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007718 0.004456 0.000000 0.00000 SCALE2 0.000000 0.008912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013454 0.00000 MASTER 444 0 4 16 31 0 8 6 0 0 0 36 END