HEADER SIGNALING PROTEIN 11-AUG-03 1UJV TITLE SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF HUMAN TITLE 2 MEMBRANE ASSOCIATED GUANYLATE KINASE INVERTED-2 (MAGI-2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE ASSOCIATED GUANYLATE KINASE INVERTED-2 COMPND 3 (MAGI-2); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ DOMAIN; COMPND 6 SYNONYM: KIAA0705 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HG03359; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-28; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ATROPHIN-1 INTERACTING PROTEIN 1, PDZ DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, KIAA0705 PROTEIN, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.NAMEKI,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1UJV 1 VERSN REVDAT 1 11-FEB-04 1UJV 0 JRNL AUTH N.NAMEKI,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF JRNL TITL 2 HUMAN MEMBRANE ASSOCIATED GUANYLATE KINASE JRNL TITL 3 INVERTED-2 (MAGI-2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : KORADI, R., BILLETER, M., GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UJV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB005907. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM PDZ DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.811, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 2 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 9 LEU A 48 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -56.49 -123.19 REMARK 500 1 SER A 3 -141.79 44.30 REMARK 500 1 ALA A 20 -62.41 -157.64 REMARK 500 1 GLN A 21 6.40 -65.10 REMARK 500 1 PHE A 23 173.06 63.54 REMARK 500 1 CYS A 45 57.99 -150.23 REMARK 500 1 GLU A 50 152.30 66.20 REMARK 500 1 VAL A 55 -51.60 -124.78 REMARK 500 1 SER A 94 118.23 -166.82 REMARK 500 2 SER A 5 117.68 66.19 REMARK 500 2 ALA A 9 -8.71 -152.24 REMARK 500 2 GLU A 10 109.34 -59.46 REMARK 500 2 ALA A 20 -166.92 54.27 REMARK 500 2 GLN A 21 9.70 40.47 REMARK 500 2 PHE A 23 174.61 63.75 REMARK 500 2 ASP A 52 -173.32 -58.48 REMARK 500 2 VAL A 55 -58.08 -124.28 REMARK 500 2 SER A 94 -63.17 -147.89 REMARK 500 3 SER A 2 97.82 -61.82 REMARK 500 3 SER A 5 -81.39 72.77 REMARK 500 3 SER A 6 150.30 62.52 REMARK 500 3 ALA A 20 -62.44 -157.32 REMARK 500 3 PHE A 23 -11.46 84.90 REMARK 500 3 PHE A 25 151.05 -49.40 REMARK 500 3 ASN A 58 54.42 32.28 REMARK 500 3 GLN A 59 4.49 47.78 REMARK 500 3 ASN A 61 126.42 65.88 REMARK 500 3 ARG A 89 -45.76 -141.61 REMARK 500 3 SER A 91 -41.10 175.51 REMARK 500 3 SER A 94 102.11 84.34 REMARK 500 4 SER A 6 -171.00 53.70 REMARK 500 4 ALA A 20 -58.11 -160.34 REMARK 500 4 PHE A 23 -71.53 69.69 REMARK 500 4 VAL A 55 -52.24 -130.46 REMARK 500 4 GLN A 59 -1.42 72.77 REMARK 500 4 ARG A 89 113.94 -160.67 REMARK 500 4 SER A 91 152.31 74.17 REMARK 500 4 SER A 94 107.57 132.94 REMARK 500 4 SER A 95 142.57 80.40 REMARK 500 5 SER A 3 73.45 51.87 REMARK 500 5 SER A 5 117.64 54.32 REMARK 500 5 SER A 6 85.53 -154.49 REMARK 500 5 ALA A 9 86.08 50.59 REMARK 500 5 LEU A 11 167.80 51.05 REMARK 500 5 PHE A 23 168.08 77.00 REMARK 500 5 PRO A 31 11.33 -69.89 REMARK 500 5 ASP A 52 -174.99 -57.15 REMARK 500 5 GLN A 59 -24.11 65.64 REMARK 500 5 ARG A 89 87.41 -160.35 REMARK 500 6 SER A 2 93.43 73.11 REMARK 500 6 SER A 5 -63.36 56.00 REMARK 500 6 GLN A 21 -3.31 55.71 REMARK 500 6 LYS A 37 -64.59 -106.09 REMARK 500 6 LEU A 40 -50.57 -122.26 REMARK 500 6 ASP A 52 105.53 -51.51 REMARK 500 6 GLN A 59 -18.78 67.06 REMARK 500 6 SER A 91 89.05 51.80 REMARK 500 7 SER A 5 83.60 -175.13 REMARK 500 7 LEU A 11 -156.70 -69.83 REMARK 500 7 ALA A 20 -52.87 -164.55 REMARK 500 7 GLU A 50 150.96 65.29 REMARK 500 7 VAL A 55 -55.74 -128.49 REMARK 500 7 SER A 95 105.00 71.82 REMARK 500 8 SER A 2 88.29 -64.53 REMARK 500 8 SER A 5 104.63 -54.24 REMARK 500 8 LEU A 11 -176.97 -68.53 REMARK 500 8 GLN A 21 -35.68 61.64 REMARK 500 8 PRO A 31 12.73 -67.96 REMARK 500 8 THR A 32 -3.72 -144.17 REMARK 500 8 ASP A 41 69.58 -154.68 REMARK 500 8 ASN A 58 54.92 38.92 REMARK 500 8 GLN A 59 -6.89 61.66 REMARK 500 8 ARG A 89 -70.04 -151.51 REMARK 500 8 SER A 95 78.87 46.74 REMARK 500 9 SER A 6 121.09 61.46 REMARK 500 9 GLN A 8 86.20 -161.98 REMARK 500 9 ALA A 20 -42.43 72.07 REMARK 500 9 PHE A 23 149.92 65.91 REMARK 500 9 ASP A 52 -170.80 -65.90 REMARK 500 9 ASN A 61 133.19 54.95 REMARK 500 9 SER A 94 -178.37 64.66 REMARK 500 10 SER A 2 -174.22 59.71 REMARK 500 10 SER A 5 -59.83 -157.14 REMARK 500 10 GLU A 10 98.22 -43.66 REMARK 500 10 ALA A 20 154.21 60.52 REMARK 500 10 GLN A 21 -0.17 47.78 REMARK 500 10 PHE A 25 -179.13 -64.47 REMARK 500 10 SER A 95 -176.35 72.27 REMARK 500 11 SER A 3 -166.72 51.09 REMARK 500 11 GLN A 8 100.66 -32.36 REMARK 500 11 GLU A 10 76.60 43.56 REMARK 500 11 ALA A 20 -60.34 -147.82 REMARK 500 11 GLN A 21 44.73 -82.74 REMARK 500 11 PHE A 23 -86.85 62.09 REMARK 500 11 PRO A 31 1.45 -62.17 REMARK 500 11 ASP A 52 -167.17 -64.57 REMARK 500 11 VAL A 55 -56.90 -122.68 REMARK 500 11 ARG A 89 -51.56 -159.12 REMARK 500 11 SER A 91 -70.73 -69.69 REMARK 500 11 SER A 95 168.91 65.20 REMARK 500 12 SER A 3 168.52 60.14 REMARK 500 12 SER A 5 125.03 74.97 REMARK 500 12 GLN A 8 -176.44 66.80 REMARK 500 12 ALA A 20 -73.50 -153.21 REMARK 500 12 GLN A 21 36.22 -76.41 REMARK 500 12 ASP A 52 -177.00 -58.63 REMARK 500 12 ASN A 58 -54.42 67.82 REMARK 500 12 GLN A 59 13.85 165.27 REMARK 500 12 HIS A 88 74.86 -108.81 REMARK 500 12 ARG A 89 68.70 -108.45 REMARK 500 13 SER A 2 -38.86 -145.53 REMARK 500 13 SER A 5 174.60 60.92 REMARK 500 13 LEU A 11 -162.69 56.45 REMARK 500 13 PHE A 23 -175.97 61.13 REMARK 500 13 LEU A 40 -58.20 -123.67 REMARK 500 13 VAL A 55 -53.62 -130.20 REMARK 500 14 SER A 2 -178.52 52.32 REMARK 500 14 SER A 3 -23.30 -142.72 REMARK 500 14 GLU A 10 115.23 -160.58 REMARK 500 14 ALA A 20 152.83 62.23 REMARK 500 14 GLN A 21 -25.42 65.42 REMARK 500 14 LYS A 37 -74.18 -70.60 REMARK 500 14 GLU A 50 151.22 62.60 REMARK 500 14 GLN A 59 -7.12 59.94 REMARK 500 14 SER A 91 -105.88 -145.02 REMARK 500 15 GLN A 8 136.62 64.09 REMARK 500 15 ALA A 20 -84.58 46.97 REMARK 500 15 VAL A 55 -57.04 -122.45 REMARK 500 15 GLN A 59 4.54 57.51 REMARK 500 15 GLN A 63 -6.69 -59.72 REMARK 500 15 ARG A 89 -145.67 -159.63 REMARK 500 16 SER A 6 174.73 59.76 REMARK 500 16 GLU A 10 97.78 65.41 REMARK 500 16 PRO A 31 10.52 -64.09 REMARK 500 16 LEU A 40 -54.52 -123.13 REMARK 500 16 CYS A 45 60.50 -118.84 REMARK 500 16 ASN A 58 57.11 35.89 REMARK 500 16 GLN A 63 -9.98 -51.57 REMARK 500 16 PRO A 93 -164.17 -78.32 REMARK 500 16 SER A 95 -175.69 -67.34 REMARK 500 17 SER A 5 159.93 109.83 REMARK 500 17 GLN A 21 -16.45 60.87 REMARK 500 17 THR A 32 -2.64 -147.63 REMARK 500 17 ASP A 52 -159.78 -64.44 REMARK 500 17 ASN A 58 -36.96 65.68 REMARK 500 17 GLN A 59 -7.54 162.31 REMARK 500 17 SER A 94 149.34 -178.30 REMARK 500 17 SER A 95 177.99 63.42 REMARK 500 18 SER A 3 173.63 55.01 REMARK 500 18 SER A 6 85.66 57.16 REMARK 500 18 LEU A 11 -160.75 49.50 REMARK 500 18 PHE A 25 170.25 -58.56 REMARK 500 18 PRO A 31 4.14 -67.63 REMARK 500 18 LYS A 37 -70.57 -75.36 REMARK 500 18 CYS A 45 67.15 -153.03 REMARK 500 18 ILE A 57 -157.03 -111.41 REMARK 500 18 ASN A 58 76.56 -53.25 REMARK 500 19 SER A 3 100.61 -171.47 REMARK 500 19 ALA A 20 -70.68 -156.90 REMARK 500 19 ASP A 41 81.41 -164.55 REMARK 500 19 ASN A 58 47.99 39.95 REMARK 500 19 HIS A 88 -120.32 -75.29 REMARK 500 19 ARG A 89 -107.22 59.28 REMARK 500 20 SER A 2 173.12 67.72 REMARK 500 20 SER A 5 -81.46 45.08 REMARK 500 20 ALA A 9 161.66 65.06 REMARK 500 20 LYS A 18 109.17 -53.64 REMARK 500 20 ALA A 20 162.41 59.56 REMARK 500 20 GLN A 21 -10.29 52.32 REMARK 500 20 ASN A 58 56.66 33.57 REMARK 500 20 ARG A 89 -155.67 -83.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1 SER A 2 14 -138.91 REMARK 500 VAL A 17 LYS A 18 14 -145.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 89 0.08 SIDE_CHAIN REMARK 500 9 PHE A 25 0.08 SIDE_CHAIN REMARK 500 10 ARG A 35 0.09 SIDE_CHAIN REMARK 500 16 ARG A 35 0.11 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000688.3 RELATED DB: TARGETDB DBREF 1UJV A 8 90 UNP Q86UL8 AIP1_HUMAN 642 724 SEQADV 1UJV GLY A 1 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 2 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 3 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV GLY A 4 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 5 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 6 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV GLY A 7 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 91 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV GLY A 92 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV PRO A 93 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 94 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV SER A 95 UNP Q86UL8 CLONING ARTIFACT SEQADV 1UJV GLY A 96 UNP Q86UL8 CLONING ARTIFACT SEQRES 1 A 96 GLY SER SER GLY SER SER GLY GLN ALA GLU LEU MET THR SEQRES 2 A 96 LEU THR ILE VAL LYS GLY ALA GLN GLY PHE GLY PHE THR SEQRES 3 A 96 ILE ALA ASP SER PRO THR GLY GLN ARG VAL LYS GLN ILE SEQRES 4 A 96 LEU ASP ILE GLN GLY CYS PRO GLY LEU CYS GLU GLY ASP SEQRES 5 A 96 LEU ILE VAL GLU ILE ASN GLN GLN ASN VAL GLN ASN LEU SEQRES 6 A 96 SER HIS THR GLU VAL VAL ASP ILE LEU LYS ASP CYS PRO SEQRES 7 A 96 ILE GLY SER GLU THR SER LEU ILE ILE HIS ARG GLY SER SEQRES 8 A 96 GLY PRO SER SER GLY HELIX 1 1 HIS A 67 ASP A 76 1 10 SHEET 1 A 4 MET A 12 VAL A 17 0 SHEET 2 A 4 GLU A 82 HIS A 88 -1 O LEU A 85 N LEU A 14 SHEET 3 A 4 LEU A 53 ILE A 57 -1 N GLU A 56 O ILE A 86 SHEET 4 A 4 GLN A 60 ASN A 61 -1 O GLN A 60 N ILE A 57 SHEET 1 B 2 PHE A 25 SER A 30 0 SHEET 2 B 2 GLY A 33 ILE A 39 -1 O GLN A 38 N THR A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 302 0 0 1 6 0 0 6 0 0 0 8 END