HEADER MEMBRANE PROTEIN 28-MAY-03 1UFD TITLE COMPARATIVE MODELING OF NODULIN 26 FROM GLYCINE MAX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULIN 26; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 36-250 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN KEYWDS MEMBRANE PROTEIN, HELIX BUNDLE EXPDTA THEORETICAL MODEL AUTHOR S.BISWAS REVDAT 1 10-FEB-04 1UFD 0 JRNL AUTH S.BISWAS JRNL TITL FUNCTIONAL PROPERTIES OF SOYBEAN NODULIN 26 FROM A JRNL TITL 2 COMPARATIVE THREE-DIMENSIONAL MODEL JRNL REF FEBS LETT. V. 558 39 2004 JRNL REFN ASTM FEBLAL NE ISSN 0014-5793 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER VERSION 3 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UFD COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-2003. REMARK 100 THE RCSB ID CODE IS RCSB005764. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE METHOD USED TO DETERMINE THE STRUCTURE IS MOLECULAR REMARK 220 DYNAMICS. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 67 SD MET A 67 CE -0.480 REMARK 500 GLU A 160 CD GLU A 160 OE1 -0.214 REMARK 500 ASP A 177 CG ASP A 177 OD1 -0.283 REMARK 500 ASN B 97 CG ASN B 97 ND2 -0.221 REMARK 500 ASP B 142 CG ASP B 142 OD1 -0.261 REMARK 500 ASP B 142 CG ASP B 142 OD2 -0.185 REMARK 500 GLN C 38 CD GLN C 38 NE2 -0.199 REMARK 500 LEU C 40 CG LEU C 40 CD2 -0.341 REMARK 500 MET C 67 SD MET C 67 CE -0.427 REMARK 500 LEU C 124 CG LEU C 124 CD1 -0.201 REMARK 500 LEU C 124 CG LEU C 124 CD2 -0.214 REMARK 500 MET C 168 SD MET C 168 CE -0.339 REMARK 500 ASN C 245 CG ASN C 245 ND2 -0.258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 144 -68.01 69.89 REMARK 500 SER A 145 -70.15 72.91 REMARK 500 THR A 152 -71.89 57.69 REMARK 500 GLU A 183 -56.34 59.70 REMARK 500 ILE A 226 -77.81 42.44 REMARK 500 TYR B 65 -55.04 71.12 REMARK 500 PHE B 144 153.69 70.58 REMARK 500 PHE C 144 -67.05 71.96 REMARK 500 SER C 145 -80.79 73.47 REMARK 500 MET C 208 -62.88 69.03 REMARK 500 LEU D 37 -103.44 72.02 REMARK 500 TYR D 65 -85.26 68.95 REMARK 500 PHE D 144 -64.71 77.98 REMARK 500 SER D 145 158.86 68.55 REMARK 500 GLU D 183 -49.77 59.24 REMARK 500 MET D 208 -42.65 70.00 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE C 52 ALA C 53 -146.70 REMARK 500 SER C 207 MET C 208 142.93 REMARK 500 VAL C 219 HIS C 220 148.22 DBREF 1UFD A 36 250 UNP P08995 NO26_SOYBN 36 250 DBREF 1UFD B 36 250 UNP P08995 NO26_SOYBN 36 250 DBREF 1UFD C 36 250 UNP P08995 NO26_SOYBN 36 250 DBREF 1UFD D 36 250 UNP P08995 NO26_SOYBN 36 250 SEQRES 1 A 215 PHE LEU GLN LYS LEU VAL ALA GLU ALA VAL GLY THR TYR SEQRES 2 A 215 PHE LEU ILE PHE ALA GLY CYS ALA SER LEU VAL VAL ASN SEQRES 3 A 215 GLU ASN TYR TYR ASN MET ILE THR PHE PRO GLY ILE ALA SEQRES 4 A 215 ILE VAL TRP GLY LEU VAL LEU THR VAL LEU VAL TYR THR SEQRES 5 A 215 VAL GLY HIS ILE SER GLY GLY HIS PHE ASN PRO ALA VAL SEQRES 6 A 215 THR ILE ALA PHE ALA SER THR ARG ARG PHE PRO LEU ILE SEQRES 7 A 215 GLN VAL PRO ALA TYR VAL VAL ALA GLN LEU LEU GLY SER SEQRES 8 A 215 ILE LEU ALA SER GLY THR LEU ARG LEU LEU PHE MET GLY SEQRES 9 A 215 ASN HIS ASP GLN PHE SER GLY THR VAL PRO ASN GLY THR SEQRES 10 A 215 ASN LEU GLN ALA PHE VAL PHE GLU PHE ILE MET THR PHE SEQRES 11 A 215 PHE LEU MET PHE VAL ILE CYS GLY VAL ALA THR ASP ASN SEQRES 12 A 215 ARG ALA VAL GLY GLU PHE ALA GLY ILE ALA ILE GLY SER SEQRES 13 A 215 THR LEU LEU LEU ASN VAL ILE ILE GLY GLY PRO VAL THR SEQRES 14 A 215 GLY ALA SER MET ASN PRO ALA ARG SER LEU GLY PRO ALA SEQRES 15 A 215 PHE VAL HIS GLY GLU TYR GLU GLY ILE TRP ILE TYR LEU SEQRES 16 A 215 LEU ALA PRO VAL VAL GLY ALA ILE ALA GLY ALA TRP VAL SEQRES 17 A 215 TYR ASN ILE VAL ARG TYR THR SEQRES 1 B 215 PHE LEU GLN LYS LEU VAL ALA GLU ALA VAL GLY THR TYR SEQRES 2 B 215 PHE LEU ILE PHE ALA GLY CYS ALA SER LEU VAL VAL ASN SEQRES 3 B 215 GLU ASN TYR TYR ASN MET ILE THR PHE PRO GLY ILE ALA SEQRES 4 B 215 ILE VAL TRP GLY LEU VAL LEU THR VAL LEU VAL TYR THR SEQRES 5 B 215 VAL GLY HIS ILE SER GLY GLY HIS PHE ASN PRO ALA VAL SEQRES 6 B 215 THR ILE ALA PHE ALA SER THR ARG ARG PHE PRO LEU ILE SEQRES 7 B 215 GLN VAL PRO ALA TYR VAL VAL ALA GLN LEU LEU GLY SER SEQRES 8 B 215 ILE LEU ALA SER GLY THR LEU ARG LEU LEU PHE MET GLY SEQRES 9 B 215 ASN HIS ASP GLN PHE SER GLY THR VAL PRO ASN GLY THR SEQRES 10 B 215 ASN LEU GLN ALA PHE VAL PHE GLU PHE ILE MET THR PHE SEQRES 11 B 215 PHE LEU MET PHE VAL ILE CYS GLY VAL ALA THR ASP ASN SEQRES 12 B 215 ARG ALA VAL GLY GLU PHE ALA GLY ILE ALA ILE GLY SER SEQRES 13 B 215 THR LEU LEU LEU ASN VAL ILE ILE GLY GLY PRO VAL THR SEQRES 14 B 215 GLY ALA SER MET ASN PRO ALA ARG SER LEU GLY PRO ALA SEQRES 15 B 215 PHE VAL HIS GLY GLU TYR GLU GLY ILE TRP ILE TYR LEU SEQRES 16 B 215 LEU ALA PRO VAL VAL GLY ALA ILE ALA GLY ALA TRP VAL SEQRES 17 B 215 TYR ASN ILE VAL ARG TYR THR SEQRES 1 C 215 PHE LEU GLN LYS LEU VAL ALA GLU ALA VAL GLY THR TYR SEQRES 2 C 215 PHE LEU ILE PHE ALA GLY CYS ALA SER LEU VAL VAL ASN SEQRES 3 C 215 GLU ASN TYR TYR ASN MET ILE THR PHE PRO GLY ILE ALA SEQRES 4 C 215 ILE VAL TRP GLY LEU VAL LEU THR VAL LEU VAL TYR THR SEQRES 5 C 215 VAL GLY HIS ILE SER GLY GLY HIS PHE ASN PRO ALA VAL SEQRES 6 C 215 THR ILE ALA PHE ALA SER THR ARG ARG PHE PRO LEU ILE SEQRES 7 C 215 GLN VAL PRO ALA TYR VAL VAL ALA GLN LEU LEU GLY SER SEQRES 8 C 215 ILE LEU ALA SER GLY THR LEU ARG LEU LEU PHE MET GLY SEQRES 9 C 215 ASN HIS ASP GLN PHE SER GLY THR VAL PRO ASN GLY THR SEQRES 10 C 215 ASN LEU GLN ALA PHE VAL PHE GLU PHE ILE MET THR PHE SEQRES 11 C 215 PHE LEU MET PHE VAL ILE CYS GLY VAL ALA THR ASP ASN SEQRES 12 C 215 ARG ALA VAL GLY GLU PHE ALA GLY ILE ALA ILE GLY SER SEQRES 13 C 215 THR LEU LEU LEU ASN VAL ILE ILE GLY GLY PRO VAL THR SEQRES 14 C 215 GLY ALA SER MET ASN PRO ALA ARG SER LEU GLY PRO ALA SEQRES 15 C 215 PHE VAL HIS GLY GLU TYR GLU GLY ILE TRP ILE TYR LEU SEQRES 16 C 215 LEU ALA PRO VAL VAL GLY ALA ILE ALA GLY ALA TRP VAL SEQRES 17 C 215 TYR ASN ILE VAL ARG TYR THR SEQRES 1 D 215 PHE LEU GLN LYS LEU VAL ALA GLU ALA VAL GLY THR TYR SEQRES 2 D 215 PHE LEU ILE PHE ALA GLY CYS ALA SER LEU VAL VAL ASN SEQRES 3 D 215 GLU ASN TYR TYR ASN MET ILE THR PHE PRO GLY ILE ALA SEQRES 4 D 215 ILE VAL TRP GLY LEU VAL LEU THR VAL LEU VAL TYR THR SEQRES 5 D 215 VAL GLY HIS ILE SER GLY GLY HIS PHE ASN PRO ALA VAL SEQRES 6 D 215 THR ILE ALA PHE ALA SER THR ARG ARG PHE PRO LEU ILE SEQRES 7 D 215 GLN VAL PRO ALA TYR VAL VAL ALA GLN LEU LEU GLY SER SEQRES 8 D 215 ILE LEU ALA SER GLY THR LEU ARG LEU LEU PHE MET GLY SEQRES 9 D 215 ASN HIS ASP GLN PHE SER GLY THR VAL PRO ASN GLY THR SEQRES 10 D 215 ASN LEU GLN ALA PHE VAL PHE GLU PHE ILE MET THR PHE SEQRES 11 D 215 PHE LEU MET PHE VAL ILE CYS GLY VAL ALA THR ASP ASN SEQRES 12 D 215 ARG ALA VAL GLY GLU PHE ALA GLY ILE ALA ILE GLY SER SEQRES 13 D 215 THR LEU LEU LEU ASN VAL ILE ILE GLY GLY PRO VAL THR SEQRES 14 D 215 GLY ALA SER MET ASN PRO ALA ARG SER LEU GLY PRO ALA SEQRES 15 D 215 PHE VAL HIS GLY GLU TYR GLU GLY ILE TRP ILE TYR LEU SEQRES 16 D 215 LEU ALA PRO VAL VAL GLY ALA ILE ALA GLY ALA TRP VAL SEQRES 17 D 215 TYR ASN ILE VAL ARG TYR THR HELIX 1 1 LEU A 37 PHE A 52 1 16 HELIX 2 2 THR A 69 TRP A 77 1 9 HELIX 3 3 VAL A 80 GLY A 89 1 10 HELIX 4 4 ALA A 99 ALA A 105 1 7 HELIX 5 5 GLN A 114 VAL A 119 1 6 HELIX 6 6 VAL A 120 PHE A 137 1 18 HELIX 7 7 PHE A 157 CYS A 172 1 16 HELIX 8 8 GLU A 183 GLY A 201 1 19 HELIX 9 9 ASN A 209 LEU A 214 1 6 HELIX 10 10 ILE A 226 ILE A 246 1 21 HELIX 11 11 LEU B 37 LEU B 50 1 14 HELIX 12 12 LEU B 50 TYR B 64 1 15 HELIX 13 13 PHE B 70 ILE B 75 1 6 HELIX 14 14 ILE B 75 GLY B 89 1 15 HELIX 15 15 ASN B 97 ALA B 105 1 9 HELIX 16 16 GLN B 114 SER B 130 1 17 HELIX 17 17 THR B 132 PHE B 137 1 6 HELIX 18 18 ALA B 156 CYS B 172 1 17 HELIX 19 19 GLU B 183 GLY B 200 1 18 HELIX 20 20 ASN B 209 GLY B 215 1 7 HELIX 21 21 GLY B 215 HIS B 220 1 6 HELIX 22 22 TRP B 227 GLY B 236 1 10 HELIX 23 23 ILE B 238 ILE B 246 1 9 HELIX 24 24 GLN C 38 ALA C 53 1 16 HELIX 25 25 THR C 69 ALA C 74 1 6 HELIX 26 26 ALA C 74 VAL C 88 1 15 HELIX 27 27 ASN C 97 ALA C 105 1 9 HELIX 28 28 TYR C 118 GLY C 131 1 14 HELIX 29 29 ALA C 156 VAL C 158 5 3 HELIX 30 30 PHE C 159 CYS C 172 1 14 HELIX 31 31 ALA C 185 GLY C 190 1 6 HELIX 32 32 SER C 191 GLY C 200 1 10 HELIX 33 33 ASN C 209 LEU C 214 1 6 HELIX 34 34 ILE C 226 ALA C 232 1 7 HELIX 35 35 PRO C 233 VAL C 247 1 15 HELIX 36 36 GLN D 38 ALA D 53 1 16 HELIX 37 37 THR D 69 VAL D 80 1 12 HELIX 38 38 VAL D 83 GLY D 89 1 7 HELIX 39 39 ASN D 97 ALA D 105 1 9 HELIX 40 40 GLN D 114 SER D 126 1 13 HELIX 41 41 SER D 126 PHE D 137 1 12 HELIX 42 42 PHE D 159 CYS D 172 1 14 HELIX 43 43 GLY D 186 ILE D 199 1 14 HELIX 44 44 ASN D 209 GLY D 215 1 7 HELIX 45 45 ILE D 228 ALA D 232 5 5 HELIX 46 46 GLY D 236 ARG D 248 1 13 CISPEP 1 THR A 107 ARG A 108 0 8.98 CISPEP 2 CYS A 172 GLY A 173 0 -19.41 CISPEP 3 THR B 107 ARG B 108 0 10.87 CISPEP 4 CYS B 172 GLY B 173 0 -14.73 CISPEP 5 THR C 107 ARG C 108 0 20.68 CISPEP 6 CYS C 172 GLY C 173 0 3.47 CISPEP 7 PRO C 216 ALA C 217 0 12.51 CISPEP 8 THR D 107 ARG D 108 0 18.17 CISPEP 9 CYS D 172 GLY D 173 0 -7.27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 93 0 0 46 0 0 0 6 0 0 0 68 END