HEADER GENE REGULATION/PROTEIN BINDING 19-MAY-03 1UEL TITLE SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B TITLE 2 COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME TITLE 3 SUBUNIT S5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN (RESIDUES 1-95); COMPND 5 SYNONYM: HHR23B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UBIQUITIN-INTERACTING MOTIF (RESIDUES 201-248); COMPND 11 SYNONYM: S5A, 26S PROTEASOME REGULATORY SUBUNIT S5A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS UBL, UIM, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS, GENE REGULATION/PROTEIN BINDING KEYWDS 3 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.FUJIWARA,T.TENNO,J.G.JEE,K.SUGASAWA,I.OHKI,C.KOJIMA, AUTHOR 2 H.TOCHIO,H.HIROAKI,H.HANAOKA,M.SHIRAKAWA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1UEL 1 VERSN REVDAT 1 10-FEB-04 1UEL 0 JRNL AUTH K.FUJIWARA,T.TENNO,K.SUGASAWA,J.G.JEE,I.OHKI, JRNL AUTH 2 C.KOJIMA,H.TOCHIO,H.HIROAKI,F.HANAOKA,M.SHIRAKAWA JRNL TITL STRUCTURE OF THE UBIQUITIN-INTERACTING MOTIF OF JRNL TITL 2 S5A BOUND TO THE UBIQUITIN-LIKE DOMAIN OF HR23B JRNL REF J.BIOL.CHEM. V. 279 4760 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14585839 JRNL DOI 10.1074/JBC.M309448200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES INCLUDING MET1 THROUGH REMARK 3 THR75 OF HHR23B AND LEU278 THROUGH GLN 296 OF S5A ARE ORDERED REMARK 3 IN SOLUTION, WHILE THE REST IS HIGHLY FLEXIBLE (BASED ON 1H- REMARK 3 15N HETERONUCLEAR NOE ANALYSIS). REMARK 4 REMARK 4 1UEL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB005736. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : U-15N, U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING PROCEDURE REMARK 210 IN CNS AND FURTHER REFINED BY REMARK 210 AMBER 7 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER REMARK 210 MODELS ARE THE 20 STRUCTURES REMARK 210 WITH THE LOWEST REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 15 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 76 -96.08 52.73 REMARK 500 1 PRO A 85 93.60 -55.74 REMARK 500 1 HIS A 90 -43.05 -135.13 REMARK 500 1 HIS A 91 22.75 45.41 REMARK 500 1 THR B 264 -11.59 54.41 REMARK 500 1 LEU B 278 -8.66 68.79 REMARK 500 1 ALA B 298 1.82 -68.89 REMARK 500 1 GLU B 299 17.74 86.09 REMARK 500 1 SER B 305 94.01 -68.32 REMARK 500 2 LYS A 76 80.01 23.84 REMARK 500 2 VAL A 80 56.58 39.16 REMARK 500 2 ALA A 84 -66.62 -147.65 REMARK 500 2 ALA B 298 -131.50 -100.20 REMARK 500 2 SER B 305 0.79 58.60 REMARK 500 3 ALA A 84 73.80 -119.58 REMARK 500 3 HIS B 262 -35.38 49.55 REMARK 500 3 ASP B 277 49.78 -82.93 REMARK 500 3 LEU B 278 -5.18 61.75 REMARK 500 3 ALA B 298 -73.56 -85.56 REMARK 500 4 THR A 22 174.03 82.17 REMARK 500 4 ALA A 79 -158.50 47.93 REMARK 500 4 ALA A 86 99.36 -68.94 REMARK 500 4 LEU A 88 14.63 55.84 REMARK 500 4 HIS A 92 0.55 -69.01 REMARK 500 4 THR B 273 -63.51 -127.95 REMARK 500 4 ASP B 277 45.77 -79.23 REMARK 500 4 ALA B 298 20.07 -74.89 REMARK 500 5 ALA A 49 25.74 49.87 REMARK 500 5 LYS A 76 -37.20 -131.91 REMARK 500 5 PRO A 77 170.52 -57.70 REMARK 500 5 LYS A 78 7.53 47.46 REMARK 500 5 PRO A 83 40.35 -77.00 REMARK 500 5 ALA A 86 -62.07 -143.28 REMARK 500 5 HIS A 93 -56.98 50.33 REMARK 500 5 HIS A 94 90.91 -68.17 REMARK 500 5 SER B 266 -159.74 -134.79 REMARK 500 5 GLN B 268 -49.14 62.56 REMARK 500 5 PRO B 276 171.75 -56.58 REMARK 500 5 ALA B 298 30.76 -74.24 REMARK 500 5 PHE B 300 6.01 59.83 REMARK 500 6 THR A 22 174.14 87.02 REMARK 500 6 VAL A 80 -12.64 49.35 REMARK 500 6 PRO A 85 97.94 -68.86 REMARK 500 6 ALA A 86 -173.19 54.89 REMARK 500 6 THR B 273 -66.10 -130.40 REMARK 500 6 LEU B 278 -10.86 62.89 REMARK 500 6 PHE B 300 19.47 51.59 REMARK 500 7 ALA A 49 25.45 49.97 REMARK 500 7 VAL A 80 87.94 65.10 REMARK 500 7 HIS A 90 168.09 61.74 REMARK 500 7 GLU B 269 -65.30 59.99 REMARK 500 7 ASP B 277 46.26 -80.92 REMARK 500 7 LEU B 278 -3.62 71.74 REMARK 500 7 GLU B 299 -30.52 -152.59 REMARK 500 7 SER B 305 13.64 54.72 REMARK 500 8 HIS A 90 -24.43 62.66 REMARK 500 8 ASP B 277 46.55 -76.60 REMARK 500 8 LEU B 278 -13.65 66.02 REMARK 500 8 GLU B 299 1.08 95.11 REMARK 500 9 ALA A 49 27.18 48.56 REMARK 500 9 LYS A 76 72.36 26.39 REMARK 500 9 HIS A 94 -6.45 64.37 REMARK 500 9 LEU B 278 -4.73 69.37 REMARK 500 9 ALA B 298 -73.15 -73.02 REMARK 500 9 GLU B 299 -9.36 -147.09 REMARK 500 9 ALA B 303 -153.92 54.60 REMARK 500 10 VAL A 80 18.35 -69.83 REMARK 500 10 PHE B 270 -55.43 59.41 REMARK 500 10 LEU B 278 -0.81 62.58 REMARK 500 10 ALA B 298 -73.72 -73.45 REMARK 500 10 GLU B 299 1.33 -157.44 REMARK 500 10 PHE B 300 -59.96 65.63 REMARK 500 10 ALA B 303 104.31 -58.50 REMARK 500 10 GLU B 304 -44.40 63.42 REMARK 500 11 ALA A 79 93.82 -65.88 REMARK 500 11 SER A 81 11.61 -67.29 REMARK 500 11 SER B 266 103.56 -57.29 REMARK 500 11 GLN B 268 -15.01 55.04 REMARK 500 11 ALA B 298 -71.07 -100.49 REMARK 500 12 ALA A 49 29.68 49.58 REMARK 500 12 SER A 81 17.23 59.15 REMARK 500 12 HIS A 90 48.55 -76.56 REMARK 500 12 HIS A 92 -54.55 61.50 REMARK 500 12 HIS A 94 -171.86 56.13 REMARK 500 12 ARG B 272 -63.60 59.90 REMARK 500 12 THR B 273 -60.75 64.56 REMARK 500 12 LEU B 278 -8.29 66.06 REMARK 500 12 ALA B 298 -147.49 -100.21 REMARK 500 12 GLN B 302 98.64 -64.75 REMARK 500 13 PRO A 85 170.12 -58.20 REMARK 500 13 ALA A 86 27.69 -71.05 REMARK 500 13 THR A 87 -49.46 60.98 REMARK 500 13 LEU A 88 -32.52 58.44 REMARK 500 13 GLN B 268 18.30 -66.60 REMARK 500 13 ASP B 277 42.76 -78.63 REMARK 500 13 LEU B 278 -6.74 75.31 REMARK 500 13 GLN B 302 -92.32 50.86 REMARK 500 13 SER B 305 178.70 60.23 REMARK 500 14 GLN A 2 75.55 -111.97 REMARK 500 14 ALA A 49 28.30 49.70 REMARK 500 14 ALA A 79 23.60 -71.49 REMARK 500 14 HIS A 90 92.17 -64.09 REMARK 500 14 THR B 264 -16.36 -140.71 REMARK 500 14 THR B 273 -160.50 45.08 REMARK 500 14 GLU B 299 11.92 86.98 REMARK 500 15 PRO A 77 170.69 -58.04 REMARK 500 15 VAL A 80 70.67 51.06 REMARK 500 15 PHE B 270 -9.53 57.58 REMARK 500 15 ARG B 272 90.51 -65.09 REMARK 500 15 GLU B 299 -33.47 -146.58 REMARK 500 16 LYS A 76 72.46 35.12 REMARK 500 16 PRO A 77 173.74 -56.73 REMARK 500 16 VAL A 80 -7.54 53.24 REMARK 500 16 GLN B 267 70.13 -68.42 REMARK 500 16 PHE B 270 109.14 -56.12 REMARK 500 16 PRO B 276 171.20 -57.77 REMARK 500 16 LEU B 278 -12.30 68.58 REMARK 500 16 ALA B 298 -84.70 -81.67 REMARK 500 17 VAL A 80 91.62 -68.72 REMARK 500 17 HIS A 90 43.88 -75.45 REMARK 500 17 GLN B 268 71.25 34.51 REMARK 500 17 PHE B 270 -87.81 37.96 REMARK 500 17 ASP B 277 36.60 -79.44 REMARK 500 17 GLU B 299 2.14 101.04 REMARK 500 17 PHE B 300 -179.71 -69.62 REMARK 500 18 LYS A 76 80.31 38.70 REMARK 500 18 LYS A 78 1.77 -68.71 REMARK 500 18 ALA A 79 106.46 -49.09 REMARK 500 18 HIS A 90 -11.04 50.16 REMARK 500 18 ASP B 277 47.82 -78.32 REMARK 500 18 LEU B 278 -1.94 60.60 REMARK 500 18 ALA B 298 -131.77 -100.58 REMARK 500 18 SER B 305 95.25 -64.73 REMARK 500 19 ALA A 49 25.26 49.45 REMARK 500 19 VAL A 80 -42.55 -130.38 REMARK 500 19 HIS A 90 53.10 33.01 REMARK 500 19 HIS A 91 42.97 -73.35 REMARK 500 19 ALA B 298 -73.94 -84.18 REMARK 500 19 GLU B 299 -20.38 -145.30 REMARK 500 19 ALA B 303 -19.29 56.69 REMARK 500 20 ALA A 79 -155.40 53.58 REMARK 500 20 PRO A 83 35.23 -72.96 REMARK 500 20 ALA A 86 -15.39 57.24 REMARK 500 20 HIS A 91 -26.75 63.56 REMARK 500 20 PRO B 276 173.30 -59.98 REMARK 500 20 LEU B 278 1.47 57.91 REMARK 500 20 ALA B 298 -81.33 -75.16 REMARK 500 20 GLU B 299 18.00 -152.52 REMARK 500 20 GLU B 304 -55.57 -137.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TRT001000364.1 RELATED DB: TARGETDB DBREF 1UEL A 1 87 UNP P54727 RD23B_HUMAN 1 87 DBREF 1UEL B 263 307 UNP P55036 PSD4_HUMAN 263 307 SEQADV 1UEL LEU A 88 UNP P54727 EXPRESSION TAG SEQADV 1UEL GLU A 89 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 90 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 91 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 92 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 93 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 94 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 95 UNP P54727 EXPRESSION TAG SEQADV 1UEL GLY B 260 UNP P55036 CLONING ARTIFACT SEQADV 1UEL SER B 261 UNP P55036 CLONING ARTIFACT SEQADV 1UEL HIS B 262 UNP P55036 CLONING ARTIFACT SEQRES 1 A 95 MET GLN VAL THR LEU LYS THR LEU GLN GLN GLN THR PHE SEQRES 2 A 95 LYS ILE ASP ILE ASP PRO GLU GLU THR VAL LYS ALA LEU SEQRES 3 A 95 LYS GLU LYS ILE GLU SER GLU LYS GLY LYS ASP ALA PHE SEQRES 4 A 95 PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY LYS ILE SEQRES 5 A 95 LEU ASN ASP ASP THR ALA LEU LYS GLU TYR LYS ILE ASP SEQRES 6 A 95 GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS PRO LYS SEQRES 7 A 95 ALA VAL SER THR PRO ALA PRO ALA THR LEU GLU HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS SEQRES 1 B 48 GLY SER HIS MET THR ILE SER GLN GLN GLU PHE GLY ARG SEQRES 2 B 48 THR GLY LEU PRO ASP LEU SER SER MET THR GLU GLU GLU SEQRES 3 B 48 GLN ILE ALA TYR ALA MET GLN MET SER LEU GLN GLY ALA SEQRES 4 B 48 GLU PHE GLY GLN ALA GLU SER ALA ASP HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 ALA A 58 LYS A 63 5 6 HELIX 3 3 PRO A 85 HIS A 90 5 6 HELIX 4 4 THR B 282 ALA B 298 1 17 SHEET 1 A 5 THR A 12 ASP A 16 0 SHEET 2 A 5 GLN A 2 THR A 7 -1 N VAL A 3 O ILE A 15 SHEET 3 A 5 PHE A 69 VAL A 74 1 O VAL A 70 N THR A 4 SHEET 4 A 5 GLN A 44 TYR A 48 -1 N ILE A 47 O VAL A 71 SHEET 5 A 5 LYS A 51 ILE A 52 -1 O LYS A 51 N TYR A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 241 0 0 4 5 0 0 6 0 0 0 12 END