HEADER TRANSFERASE 15-MAY-03 1UEH TITLE E. COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH TRITON X- TITLE 2 100, MAGNESIUM AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET32XA-LIC KEYWDS PARALLEL ALPHA-BETA, ROSSMANN-LIKE FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.-Y.CHANG,T.-P.KO,P.-H.LIANG,A.H.-J.WANG REVDAT 3 13-JUL-11 1UEH 1 VERSN REVDAT 2 24-FEB-09 1UEH 1 VERSN REVDAT 1 12-AUG-03 1UEH 0 JRNL AUTH S.-Y.CHANG,T.-P.KO,P.-H.LIANG,A.H.-J.WANG JRNL TITL CATALYTIC MECHANISM REVEALED BY THE CRYSTAL STRUCTURE OF JRNL TITL 2 UNDECAPRENYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH SULFATE, JRNL TITL 3 MAGNESIUM, AND TRITON JRNL REF J.BIOL.CHEM. V. 278 29298 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12756244 JRNL DOI 10.1074/JBC.M302687200 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 48741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2446 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2569 REMARK 3 BIN FREE R VALUE : 0.2819 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.65 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB005732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.860 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.89 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRITON X-100, MAGNESIUM CHLORIDE, REMARK 280 AMMONIUM SULFATE, MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.98100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.98100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME IS A HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 TRP A 75 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 PHE A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 ARG B 242 REMARK 465 PHE B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 PRO B 248 REMARK 465 GLY B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1013 O HOH A 1118 2.07 REMARK 500 O HOH A 1096 O HOH A 1186 2.09 REMARK 500 O HOH B 977 O HOH B 978 2.12 REMARK 500 O HOH A 967 O HOH A 969 2.12 REMARK 500 O HOH B 933 O HOH B 1233 2.13 REMARK 500 O HOH B 933 O HOH B 1247 2.14 REMARK 500 O HOH A 932 O HOH A 1025 2.16 REMARK 500 O HOH A 1095 O HOH A 1145 2.17 REMARK 500 O HOH A 1014 O HOH A 1031 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 86 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 199 61.85 -113.99 REMARK 500 PHE A 204 -146.79 -80.74 REMARK 500 LEU A 206 -60.26 -122.63 REMARK 500 HIS B 199 65.69 -109.73 REMARK 500 PHE B 204 -145.36 -81.79 REMARK 500 LEU B 206 -58.73 -126.79 REMARK 500 ASP B 225 -167.44 -124.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 928 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1014 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1036 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1055 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1130 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A1140 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A1155 DISTANCE = 8.71 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A1191 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1193 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1198 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1199 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1201 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1202 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A1204 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B 952 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH B1061 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH B1082 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH B1101 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH B1110 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH B1117 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B1127 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH B1142 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1158 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B1169 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B1173 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B1183 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH B1200 DISTANCE = 11.89 ANGSTROMS REMARK 525 HOH B1203 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH B1210 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B1211 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH B1212 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1221 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH B1222 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH B1226 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH B1228 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B1229 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH B1231 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1235 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B1253 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1255 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH B1258 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B1263 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1268 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1279 DISTANCE = 11.81 ANGSTROMS REMARK 525 HOH B1290 DISTANCE = 6.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN B 801 REMARK 610 OXN B 802 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1206 O REMARK 620 2 HOH B1292 O 173.0 REMARK 620 3 HOH B1293 O 83.2 90.6 REMARK 620 4 HOH A1205 O 90.8 85.2 83.1 REMARK 620 5 HIS A 199 ND1 91.4 93.9 165.4 83.5 REMARK 620 6 GLU B 213 OE2 94.5 89.0 93.3 173.2 100.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1207 O REMARK 620 2 HOH A1208 O 93.3 REMARK 620 3 HOH B1294 O 89.0 83.7 REMARK 620 4 HOH B1295 O 171.6 78.9 87.1 REMARK 620 5 GLU A 213 OE2 88.9 89.5 172.8 94.1 REMARK 620 6 HIS B 199 ND1 96.2 164.2 83.8 90.7 103.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JP3 RELATED DB: PDB REMARK 900 APO-ENZYME STRUCTURE DETERMINED BY SAD METHOD USING SE-MET DBREF 1UEH A 1 253 UNP P60472 UPPS_ECOLI 1 253 DBREF 1UEH B 1 253 UNP P60472 UPPS_ECOLI 1 253 SEQRES 1 A 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 A 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 A 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 A 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 A 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 A 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 A 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 A 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 A 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 A 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 A 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 A 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 A 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 A 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 A 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 A 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 A 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 A 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 A 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 A 253 PRO GLY ASP GLU THR ALA SEQRES 1 B 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 B 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 B 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 B 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 B 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 B 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 B 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 B 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 B 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 B 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 B 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 B 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 B 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 B 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 B 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 B 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 B 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 B 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 B 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 B 253 PRO GLY ASP GLU THR ALA HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 B 903 5 HET SO4 B 904 5 HET SO4 B 905 5 HET MG A 701 1 HET MG A 702 1 HET OXN B 801 24 HET OXN B 802 30 HET UNL B 803 7 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM OXN OXTOXYNOL-10 HETNAM UNL UNKNOWN LIGAND HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 MG 2(MG 2+) FORMUL 10 OXN 2(C34 H62 O11) FORMUL 13 HOH *696(H2 O) HELIX 1 1 GLY A 27 GLN A 35 1 9 HELIX 2 2 ILE A 38 ASN A 60 1 23 HELIX 3 3 MET A 86 GLU A 96 1 11 HELIX 4 4 GLU A 96 HIS A 103 1 8 HELIX 5 5 ASN A 117 ALA A 132 1 16 HELIX 6 6 GLY A 146 GLN A 164 1 19 HELIX 7 7 GLN A 168 ILE A 172 5 5 HELIX 8 8 ASP A 173 GLN A 179 1 7 HELIX 9 9 LEU A 206 ALA A 210 5 5 HELIX 10 10 LEU A 220 PHE A 224 5 5 HELIX 11 11 ASP A 225 ASN A 238 1 14 HELIX 12 12 GLY B 27 GLN B 35 1 9 HELIX 13 13 ILE B 38 ASN B 60 1 23 HELIX 14 14 PRO B 78 HIS B 103 1 26 HELIX 15 15 ASP B 112 PHE B 116 5 5 HELIX 16 16 ASN B 117 ALA B 132 1 16 HELIX 17 17 GLY B 146 GLY B 165 1 20 HELIX 18 18 GLN B 168 ILE B 172 5 5 HELIX 19 19 ASP B 173 GLN B 179 1 7 HELIX 20 20 LEU B 206 ALA B 210 5 5 HELIX 21 21 LEU B 220 PHE B 224 5 5 HELIX 22 22 ASP B 225 ASN B 238 1 14 SHEET 1 A 6 ARG A 106 ILE A 110 0 SHEET 2 A 6 THR A 138 ALA A 143 1 O LEU A 139 N ARG A 106 SHEET 3 A 6 ALA A 64 PHE A 70 1 N LEU A 67 O ALA A 142 SHEET 4 A 6 HIS A 20 ILE A 24 1 N ILE A 23 O THR A 66 SHEET 5 A 6 LEU A 191 ARG A 194 1 O ILE A 193 N ALA A 22 SHEET 6 A 6 GLU A 213 PHE A 216 1 O TYR A 215 N VAL A 192 SHEET 1 B 6 ARG B 106 ILE B 110 0 SHEET 2 B 6 THR B 138 ALA B 143 1 O LEU B 139 N ARG B 106 SHEET 3 B 6 ALA B 64 PHE B 70 1 N LEU B 67 O ALA B 142 SHEET 4 B 6 HIS B 20 MET B 25 1 N VAL B 21 O THR B 66 SHEET 5 B 6 LEU B 191 THR B 195 1 O ILE B 193 N ALA B 22 SHEET 6 B 6 GLU B 213 PHE B 216 1 O TYR B 215 N VAL B 192 LINK MG MG A 701 O HOH A1206 1555 1555 1.97 LINK MG MG A 701 O HOH B1292 1555 1555 2.25 LINK MG MG A 701 O HOH B1293 1555 1555 2.01 LINK MG MG A 701 O HOH A1205 1555 1555 2.06 LINK MG MG A 702 O HOH A1207 1555 1555 2.28 LINK MG MG A 702 O HOH A1208 1555 1555 2.06 LINK MG MG A 702 O HOH B1294 1555 1555 1.98 LINK MG MG A 702 O HOH B1295 1555 1555 2.07 LINK MG MG A 701 ND1 HIS A 199 1555 1555 2.19 LINK MG MG A 701 OE2 GLU B 213 1555 1555 2.17 LINK MG MG A 702 OE2 GLU A 213 1555 1555 2.21 LINK MG MG A 702 ND1 HIS B 199 1555 1555 2.19 SITE 1 AC1 6 GLY A 27 ASN A 28 GLY A 29 ARG A 30 SITE 2 AC1 6 ARG A 39 HOH A1170 SITE 1 AC2 4 ARG A 194 ARG A 200 SER A 202 ARG B 241 SITE 1 AC3 5 GLY B 27 ASN B 28 GLY B 29 ARG B 30 SITE 2 AC3 5 HOH B1037 SITE 1 AC4 4 ARG B 194 ARG B 200 SER B 202 HOH B1038 SITE 1 AC5 5 LYS B 33 ARG B 102 HOH B 973 HOH B1163 SITE 2 AC5 5 HOH B1261 SITE 1 AC6 6 HIS A 199 HOH A1205 HOH A1206 GLU B 213 SITE 2 AC6 6 HOH B1292 HOH B1293 SITE 1 AC7 6 GLU A 213 HOH A1207 HOH A1208 HIS B 199 SITE 2 AC7 6 HOH B1294 HOH B1295 SITE 1 AC8 6 VAL B 54 SER B 55 ASN B 59 GLU B 96 SITE 2 AC8 6 HIS B 103 OXN B 802 SITE 1 AC9 10 MET B 25 ASN B 28 HIS B 43 GLY B 46 SITE 2 AC9 10 ALA B 47 ALA B 69 ILE B 109 ALA B 143 SITE 3 AC9 10 TRP B 221 OXN B 801 SITE 1 BC1 6 ILE B 38 ARG B 39 SER B 99 ARG B 102 SITE 2 BC1 6 HIS B 103 HOH B 948 CRYST1 63.962 67.422 111.756 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008948 0.00000 MASTER 495 0 10 22 12 0 19 6 0 0 0 40 END