HEADER HYDROLASE/NEUROPEPTIDE 12-MAY-03 1UEE TITLE THE STRUCTURE OF SUBSTRATE-BOUND BOTOX LIGHT CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT CHAIN DOMAIN; COMPND 5 SYNONYM: THE ZINC-BOUND BOTULINUM NEUROTOXIN SEROTYPE A COMPND 6 LIGHT CHAIN; COMPND 7 EC: 3.4.24.69; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 7-MER PEPTIDE FROM SYNAPTOSOMAL-ASSOCIATED COMPND 10 PROTEIN 25; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: SNAP-25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN KEYWDS HYDROLASE, NEUROPEPTIDE EXPDTA THEORETICAL MODEL AUTHOR Y.-P.PANG REVDAT 1 10-AUG-04 1UEE 0 JRNL AUTH Y.-P.PANG JRNL TITL THREE-DIMENSIONAL MODEL OF A SUBSTRATE-BOUND JRNL TITL 2 LIGHT-CHAIN DOMAIN OF BOTOX PREDICTED BY MULTIPLE JRNL TITL 3 MOLECULAR DYNAMICS SIMULATION DOCKING: NEW JRNL TITL 4 APPROACH TO DOCKING FLEXIBLE MOLECULES WITH JRNL TITL 5 CONSIDERATION OF SOLVATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UEE COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-2003. REMARK 100 THE RCSB ID CODE IS RCSB005729. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 429A REMARK 465 ARG A 429B REMARK 465 GLY A 429C REMARK 465 ILE A 429D REMARK 465 ILE A 429E REMARK 465 THR A 429F REMARK 465 SER A 429G REMARK 465 LYS A 429H REMARK 465 THR A 429I REMARK 465 LYS A 429J REMARK 465 SER A 429K REMARK 465 LEU A 429L REMARK 465 ASP A 429M REMARK 465 LYS A 429N REMARK 465 GLY A 429O REMARK 465 TYR A 429P REMARK 465 ASN A 429Q REMARK 465 LYS A 429R REMARK 465 ALA A 429S REMARK 465 LEU A 429T REMARK 465 ASN A 429U REMARK 465 ASP A 429V REMARK 465 LEU A 429W REMARK 465 ASN A 448A REMARK 465 ASP A 448B REMARK 465 LEU A 448C REMARK 465 ASN A 448D REMARK 465 LYS A 448E REMARK 465 GLY A 448F REMARK 465 GLU A 448G REMARK 465 GLU A 448H REMARK 465 ILE A 448I REMARK 465 THR A 448J REMARK 465 SER A 448K REMARK 465 ASP A 448L REMARK 465 THR A 448M REMARK 465 ASN A 448N REMARK 465 ILE A 448O REMARK 465 GLU A 448P REMARK 465 ALA A 448Q REMARK 465 ALA A 448R REMARK 465 GLU A 448S REMARK 465 GLU A 448T REMARK 465 ASN A 448U REMARK 465 ILE A 448V REMARK 465 SER A 448W REMARK 465 LEU A 448X REMARK 465 ASP A 448Y REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 260 CD GLU A 260 OE2 0.111 REMARK 500 GLU A 350 CD GLU A 350 OE2 0.108 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 798 DISTANCE = 5.86 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BTA RELATED DB: PDB REMARK 900 THE SAME PROTEIN DBREF 1UEE A 1 496 UNP P10845 BXA1_CLOBO 1 544 DBREF 1UEE B 499 505 UNP P13795 SN25_HUMAN 194 200 SEQRES 1 A 544 PRO PHE VAL ASN LYS GLN PHE ASN TYR LYS ASP PRO VAL SEQRES 2 A 544 ASN GLY VAL ASP ILE ALA TYR ILE LYS ILE PRO ASN VAL SEQRES 3 A 544 GLY GLN MET GLN PRO VAL LYS ALA PHE LYS ILE HIS ASN SEQRES 4 A 544 LYS ILE TRP VAL ILE PRO GLU ARG ASP THR PHE THR ASN SEQRES 5 A 544 PRO GLU GLU GLY ASP LEU ASN PRO PRO PRO GLU ALA LYS SEQRES 6 A 544 GLN VAL PRO VAL SER TYR TYR ASP SER THR TYR LEU SER SEQRES 7 A 544 THR ASP ASN GLU LYS ASP ASN TYR LEU LYS GLY VAL THR SEQRES 8 A 544 LYS LEU PHE GLU ARG ILE TYR SER THR ASP LEU GLY ARG SEQRES 9 A 544 MET LEU LEU THR SER ILE VAL ARG GLY ILE PRO PHE TRP SEQRES 10 A 544 GLY GLY SER THR ILE ASP THR GLU LEU LYS VAL ILE ASP SEQRES 11 A 544 THR ASN CYS ILE ASN VAL ILE GLN PRO ASP GLY SER TYR SEQRES 12 A 544 ARG SER GLU GLU LEU ASN LEU VAL ILE ILE GLY PRO SER SEQRES 13 A 544 ALA ASP ILE ILE GLN PHE GLU CYS LYS SER PHE GLY HIS SEQRES 14 A 544 GLU VAL LEU ASN LEU THR ARG ASN GLY TYR GLY SER THR SEQRES 15 A 544 GLN TYR ILE ARG PHE SER PRO ASP PHE THR PHE GLY PHE SEQRES 16 A 544 GLU GLU SER LEU GLU VAL ASP THR ASN PRO LEU LEU GLY SEQRES 17 A 544 ALA GLY LYS PHE ALA THR ASP PRO ALA VAL THR LEU ALA SEQRES 18 A 544 HIS GLU LEU ILE HIS ALA GLY HIS ARG LEU TYR GLY ILE SEQRES 19 A 544 ALA ILE ASN PRO ASN ARG VAL PHE LYS VAL ASN THR ASN SEQRES 20 A 544 ALA TYR TYR GLU MET SER GLY LEU GLU VAL SER PHE GLU SEQRES 21 A 544 GLU LEU ARG THR PHE GLY GLY HIS ASP ALA LYS PHE ILE SEQRES 22 A 544 ASP SER LEU GLN GLU ASN GLU PHE ARG LEU TYR TYR TYR SEQRES 23 A 544 ASN LYS PHE LYS ASP ILE ALA SER THR LEU ASN LYS ALA SEQRES 24 A 544 LYS SER ILE VAL GLY THR THR ALA SER LEU GLN TYR MET SEQRES 25 A 544 LYS ASN VAL PHE LYS GLU LYS TYR LEU LEU SER GLU ASP SEQRES 26 A 544 THR SER GLY LYS PHE SER VAL ASP LYS LEU LYS PHE ASP SEQRES 27 A 544 LYS LEU TYR LYS MET LEU THR GLU ILE TYR THR GLU ASP SEQRES 28 A 544 ASN PHE VAL LYS PHE PHE LYS VAL LEU ASN ARG LYS THR SEQRES 29 A 544 TYR LEU ASN PHE ASP LYS ALA VAL PHE LYS ILE ASN ILE SEQRES 30 A 544 VAL PRO LYS VAL ASN TYR THR ILE TYR ASP GLY PHE ASN SEQRES 31 A 544 LEU ARG ASN THR ASN LEU ALA ALA ASN PHE ASN GLY GLN SEQRES 32 A 544 ASN THR GLU ILE ASN ASN MET ASN PHE THR LYS LEU LYS SEQRES 33 A 544 ASN PHE THR GLY LEU PHE GLU PHE TYR LYS LEU LEU CYS SEQRES 34 A 544 VAL ARG GLY ILE ILE THR SER LYS THR LYS SER LEU ASP SEQRES 35 A 544 LYS GLY TYR ASN LYS ALA LEU ASN ASP LEU CYS ILE LYS SEQRES 36 A 544 VAL ASN ASN TRP ASP LEU PHE PHE SER PRO SER GLU ASP SEQRES 37 A 544 ASN PHE THR ASN ASP LEU ASN LYS GLY GLU GLU ILE THR SEQRES 38 A 544 SER ASP THR ASN ILE GLU ALA ALA GLU GLU ASN ILE SER SEQRES 39 A 544 LEU ASP LEU ILE GLN GLN TYR TYR LEU THR PHE ASN PHE SEQRES 40 A 544 ASP ASN GLU PRO GLU ASN ILE SER ILE GLU ASN LEU SER SEQRES 41 A 544 SER ASP ILE ILE GLY GLN LEU GLU LEU MET PRO ASN ILE SEQRES 42 A 544 GLU ARG PHE PRO ASN GLY LYS LYS TYR GLU LEU SEQRES 1 B 7 GLU ALA ASN GLN ARG ALA THR HET ZN A 497 1 HET OH 3498 2 HETNAM ZN ZINC ION HETNAM OH HYDROXIDE ION FORMUL 3 ZN ZN 2+ FORMUL 4 OH H O 1- FORMUL 5 HOH *3060(H2 O1) HELIX 1 1 THR A 79 SER A 99 1 21 HELIX 2 2 THR A 100 GLY A 113 1 14 HELIX 3 3 ILE A 129 CYS A 133 5 5 HELIX 4 4 ASN A 173 ASN A 177 5 5 HELIX 5 5 LEU A 199 THR A 203 5 5 HELIX 6 6 ASP A 215 TYR A 232 1 18 HELIX 7 7 PHE A 259 GLY A 266 1 8 HELIX 8 8 ASP A 274 PHE A 281 1 8 HELIX 9 9 ARG A 282 ASN A 297 1 16 HELIX 10 10 SER A 308 TYR A 320 1 13 HELIX 11 11 ASP A 333 GLU A 346 1 14 HELIX 12 12 THR A 349 VAL A 354 1 6 HELIX 13 13 THR A 364 PHE A 368 5 5 HELIX 14 14 THR A 394 ASN A 399 1 6 HELIX 15 15 PHE A 400 ASN A 404 5 5 HELIX 16 16 TRP A 436 LEU A 438 5 3 HELIX 17 17 SER A 443 PHE A 447 5 5 HELIX 18 18 ILE A 450 LEU A 455 1 6 SHEET 1 A 8 SER A 142 GLU A 146 0 SHEET 2 A 8 ILE A 134 GLN A 138 -1 N GLN A 138 O SER A 142 SHEET 3 A 8 ILE A 18 LYS A 22 -1 N TYR A 20 O ILE A 137 SHEET 4 A 8 VAL A 32 HIS A 38 -1 O ALA A 34 N ALA A 19 SHEET 5 A 8 ILE A 41 ARG A 47 -1 O VAL A 43 N PHE A 35 SHEET 6 A 8 LEU A 150 GLY A 154 1 O ILE A 152 N ILE A 44 SHEET 7 A 8 GLN A 183 ARG A 186 1 O ILE A 185 N ILE A 153 SHEET 8 A 8 GLU A 163 CYS A 164 -1 N GLU A 163 O ARG A 186 SHEET 1 B 2 GLU A 125 LYS A 127 0 SHEET 2 B 2 SER A 301 VAL A 303 1 O SER A 301 N LEU A 126 SHEET 1 C 4 GLY A 210 ALA A 213 0 SHEET 2 C 4 PHE A 191 GLU A 197 -1 N PHE A 195 O PHE A 212 SHEET 3 C 4 ALA A 371 LYS A 374 -1 O PHE A 373 N THR A 192 SHEET 4 C 4 THR A 413 LYS A 414 -1 O THR A 413 N LYS A 374 SHEET 1 D 2 VAL A 241 LYS A 243 0 SHEET 2 D 2 GLU A 256 SER A 258 -1 O VAL A 257 N PHE A 242 SHEET 1 E 2 SER A 323 ASP A 325 0 SHEET 2 E 2 LYS A 329 SER A 331 -1 O LYS A 329 N ASP A 325 SHEET 1 F 2 TYR A 425 LYS A 426 0 SHEET 2 F 2 VAL A 433 ASN A 434 -1 O VAL A 433 N LYS A 426 SSBOND 1 CYS A 429 CYS A 430 LINK ZN ZN A 497 NE2 HIS A 222 LINK ZN ZN A 497 NE2 HIS A 226 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 110 0 2 18 20 0 0 6 0 0 0 43 END