HEADER HYDROLASE 29-APR-03 1UDE TITLE CRYSTAL STRUCTURE OF THE INORGANIC PYROPHOSPHATASE FROM THE TITLE 2 HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BE21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS INORGANIC PYROPHOSPHATASE X-RAY CRYSTALLOGRAPHIC ANALYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LIU,R.GAO,W.ZHOU,M.BARTLAM,Z.RAO REVDAT 4 06-NOV-19 1UDE 1 JRNL SEQADV REVDAT 3 13-JUL-11 1UDE 1 VERSN REVDAT 2 24-FEB-09 1UDE 1 VERSN REVDAT 1 20-JAN-04 1UDE 0 JRNL AUTH B.LIU,M.BARTLAM,R.GAO,W.ZHOU,H.PANG,Y.LIU,Y.FENG,Z.RAO JRNL TITL CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC INORGANIC JRNL TITL 2 PYROPHOSPHATASE FROM THE ARCHAEON PYROCOCCUS HORIKOSHII. JRNL REF BIOPHYS.J. V. 86 420 2004 JRNL REFN ISSN 0006-3495 JRNL PMID 14695284 JRNL DOI 10.1016/S0006-3495(04)74118-1 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2268 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 268 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.947 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INORGANIC PYROPHOSPHATASE SULFOLOBUS REMARK 3 ACIDOCALDARIUS (S-PPASE) REMARK 4 REMARK 4 1UDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.930 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA ACETETE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.91350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.34350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.91350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.34350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 TRIMER IN THE ASYMMETRIC UNIT BY CRYSTALLOGRAPHIC QUADRATIC REMARK 300 OPERATIONS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 143.65400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 PHE A 175 REMARK 465 GLY A 176 REMARK 465 LYS A 177 REMARK 465 LYS A 178 REMARK 465 GLU A 179 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 172 REMARK 465 GLU B 173 REMARK 465 LYS B 174 REMARK 465 PHE B 175 REMARK 465 GLY B 176 REMARK 465 LYS B 177 REMARK 465 LYS B 178 REMARK 465 GLU B 179 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 VAL C -6 REMARK 465 PRO C -5 REMARK 465 ARG C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 PRO C 3 REMARK 465 LYS C 172 REMARK 465 GLU C 173 REMARK 465 LYS C 174 REMARK 465 PHE C 175 REMARK 465 GLY C 176 REMARK 465 LYS C 177 REMARK 465 LYS C 178 REMARK 465 GLU C 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 171 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL C 13 N GLU C 15 2.10 REMARK 500 O VAL C 111 N ASP C 113 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 VAL C 13 CG2 VAL C 13 2655 1.78 REMARK 500 NH2 ARG C 139 NH2 ARG C 139 2755 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 98 C SER A 99 N -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 11 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 66 C - N - CA ANGL. DEV. = -21.8 DEGREES REMARK 500 HIS C 5 CB - CA - C ANGL. DEV. = -31.8 DEGREES REMARK 500 ASP C 6 N - CA - CB ANGL. DEV. = 18.7 DEGREES REMARK 500 PRO C 11 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 PRO C 11 C - N - CD ANGL. DEV. = -29.7 DEGREES REMARK 500 PRO C 14 CA - N - CD ANGL. DEV. = -26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 -128.37 -61.79 REMARK 500 VAL A 13 -56.68 -14.48 REMARK 500 PRO A 14 -77.58 -62.50 REMARK 500 LYS A 35 -84.14 -61.18 REMARK 500 GLU A 36 -70.34 -55.50 REMARK 500 ARG A 44 165.37 171.80 REMARK 500 PRO A 49 49.15 -59.62 REMARK 500 GLU A 65 -65.83 -28.87 REMARK 500 LEU A 83 2.25 95.78 REMARK 500 SER A 99 72.99 30.77 REMARK 500 GLU A 112 33.35 -87.47 REMARK 500 HIS B 5 -44.76 -143.04 REMARK 500 ASP B 6 26.80 28.25 REMARK 500 PRO B 11 -123.20 -63.55 REMARK 500 VAL B 13 -73.41 -87.04 REMARK 500 LEU B 46 129.25 -38.42 REMARK 500 PRO B 49 43.15 -62.88 REMARK 500 TYR B 52 120.60 -39.66 REMARK 500 ARG B 61 70.41 49.11 REMARK 500 GLU B 65 -144.63 16.71 REMARK 500 ASP B 68 138.04 -25.92 REMARK 500 ASP B 98 -101.90 -89.57 REMARK 500 ASP B 103 50.74 -146.19 REMARK 500 GLU B 112 25.79 -75.24 REMARK 500 ILE B 122 -43.53 -27.87 REMARK 500 SER B 123 4.89 -65.06 REMARK 500 PRO B 126 146.70 -37.98 REMARK 500 ARG B 166 -70.27 -62.82 REMARK 500 ALA B 167 -33.12 -36.73 REMARK 500 HIS C 5 81.95 -6.08 REMARK 500 ASP C 6 110.55 84.38 REMARK 500 LEU C 7 120.99 172.53 REMARK 500 PRO C 9 -29.21 -35.21 REMARK 500 PRO C 11 3.80 -67.62 REMARK 500 ASN C 12 -23.01 -147.85 REMARK 500 VAL C 13 -175.03 67.82 REMARK 500 PRO C 14 -70.60 44.18 REMARK 500 GLU C 15 -104.56 -91.71 REMARK 500 VAL C 16 92.31 -48.98 REMARK 500 THR C 37 -64.56 -133.93 REMARK 500 LEU C 46 126.01 -29.76 REMARK 500 PRO C 49 44.13 -76.59 REMARK 500 ARG C 61 43.88 36.94 REMARK 500 GLU C 65 -34.76 7.02 REMARK 500 PRO C 69 -166.58 -70.21 REMARK 500 THR C 80 -144.89 -88.45 REMARK 500 ALA C 88 -159.39 -93.63 REMARK 500 ARG C 89 94.53 179.19 REMARK 500 ASP C 98 13.97 -62.73 REMARK 500 SER C 99 81.52 74.66 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1UDE A 1 179 UNP O59570 IPYR_PYRHO 1 178 DBREF 1UDE B 1 179 UNP O59570 IPYR_PYRHO 1 178 DBREF 1UDE C 1 179 UNP O59570 IPYR_PYRHO 1 178 SEQADV 1UDE HIS A -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY A -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU A -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL A -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO A -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG A -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY A -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET A 0 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY B -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU B -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL B -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO B -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG B -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY B -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET B 0 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY C -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU C -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL C -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO C -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG C -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY C -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET C 0 UNP O59570 EXPRESSION TAG SEQRES 1 A 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 A 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 A 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 A 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 A 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 A 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 A 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 A 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 A 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 A 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 A 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 A 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 A 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 A 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU SEQRES 1 B 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 B 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 B 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 B 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 B 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 B 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 B 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 B 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 B 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 B 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 B 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 B 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 B 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 B 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU SEQRES 1 C 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 C 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 C 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 C 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 C 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 C 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 C 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 C 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 C 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 C 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 C 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 C 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 C 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 C 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 C 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU FORMUL 4 HOH *93(H2 O) HELIX 1 1 ASP A 113 LYS A 117 5 5 HELIX 2 2 ASP A 121 VAL A 125 5 5 HELIX 3 3 PRO A 126 TYR A 140 1 15 HELIX 4 4 LYS A 141 GLY A 146 5 5 HELIX 5 5 ALA A 157 LYS A 172 1 16 HELIX 6 6 ASP B 113 LYS B 117 5 5 HELIX 7 7 ASP B 121 VAL B 125 5 5 HELIX 8 8 PRO B 126 TYR B 140 1 15 HELIX 9 9 LYS B 141 GLY B 146 5 5 HELIX 10 10 GLY B 156 MET B 170 1 15 HELIX 11 11 ASP C 113 LYS C 117 5 5 HELIX 12 12 ASP C 121 VAL C 125 5 5 HELIX 13 13 PRO C 126 LYS C 138 1 13 HELIX 14 14 LYS C 141 GLY C 146 5 5 HELIX 15 15 GLY C 156 MET C 170 1 15 SHEET 1 A 8 ASP A 101 LYS A 102 0 SHEET 2 A 8 ILE A 149 GLY A 156 0 SHEET 3 A 8 VAL A 17 ILE A 23 0 SHEET 4 A 8 ASP A 55 ILE A 58 -1 O TYR A 56 N ILE A 23 SHEET 5 A 8 ASP A 71 VAL A 74 -1 O VAL A 74 N ASP A 55 SHEET 6 A 8 LYS A 105 PRO A 110 1 O ALA A 108 N MET A 73 SHEET 7 A 8 ILE A 85 ASP A 98 -1 N PHE A 94 O LYS A 105 SHEET 8 A 8 ILE A 149 GLY A 156 -1 O GLU A 155 N LEU A 93 SHEET 1 B 7 ASN A 29 LEU A 33 0 SHEET 2 B 7 LEU A 40 VAL A 45 -1 O ARG A 44 N LYS A 30 SHEET 3 B 7 THR C 84 ALA C 88 1 O ILE C 85 N LEU A 40 SHEET 4 B 7 VAL C 17 ILE C 23 -1 N ALA C 19 O ILE C 86 SHEET 5 B 7 ASP C 55 ILE C 59 -1 O TYR C 56 N ILE C 23 SHEET 6 B 7 PHE C 70 VAL C 74 -1 O ILE C 72 N GLY C 57 SHEET 7 B 7 VAL C 106 ALA C 108 1 O ALA C 108 N MET C 73 SHEET 1 C 9 ILE B 150 GLY B 153 0 SHEET 2 C 9 ASN C 29 LEU C 33 0 SHEET 3 C 9 VAL B 17 ILE B 23 0 SHEET 4 C 9 ASP B 55 ILE B 58 -1 O ILE B 58 N LEU B 20 SHEET 5 C 9 ASP B 71 VAL B 74 -1 O VAL B 74 N ASP B 55 SHEET 6 C 9 LYS B 105 PRO B 110 1 O VAL B 106 N MET B 73 SHEET 7 C 9 THR B 84 ILE B 97 -1 N ARG B 89 O VAL B 109 SHEET 8 C 9 LEU C 40 VAL C 45 1 O LEU C 42 N ILE B 85 SHEET 9 C 9 ASN C 29 LEU C 33 -1 N LYS C 30 O ARG C 44 SHEET 1 D 2 ASN B 29 LEU B 33 0 SHEET 2 D 2 LEU B 40 VAL B 45 -1 O ARG B 44 N LYS B 30 SHEET 1 E 2 LEU C 93 ILE C 97 0 SHEET 2 E 2 ILE C 150 GLU C 155 -1 O ILE C 150 N ILE C 97 CRYST1 71.827 86.687 92.823 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010773 0.00000 MASTER 461 0 0 15 28 0 0 6 0 0 0 45 END