HEADER HYDROLASE 07-APR-03 1UC1 TITLE HOMOLOGY PREDICTED HUMAN COLLAGENASE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIX METALLOPROTEINASE-13, MMP-13; COMPND 5 EC: 3.4.24.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS HYDROLASE, METALLOPROTEASE, GLYCOPROTEIN, ZINK, ZYMOGEN, KEYWDS 2 CALCIUM, COLLAGEN DEGRADATION, EXTRACELLULAR MATRIX, SIGNAL KEYWDS 3 3D-STRUCTURE, POLYMORPHISIM EXPDTA THEORETICAL MODEL AUTHOR R.ANNABHIMOJU,D.V.R.V.SAGAR REVDAT 1 22-APR-03 1UC1 0 JRNL AUTH R.ANNABHIMOJU,D.V.R.V.SAGAR JRNL TITL MATRIX METALLOPROTEINASE-13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER 2000 REMARK 3 AUTHORS : SALI,BLUNDELL,FISER,SANCHEZ,MARTI-RENOM, REMARK 3 YERKOVICH,BADRETDINOV,MELO,OVERINGTON,FEYFANT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UC1 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-2003. REMARK 100 THE RCSB ID CODE IS RCSB005661. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: FASTA FORMAT WAS TAKEN FROM SWISS PROT AND BLASTED REMARK 220 AGAINST PDB, GOT HOMOLOGUES SEQUENCES, AND DONE HOMOLOGY REMARK 220 MODELING AND MODELER WAS USED REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 47 CA - CB - CG ANGL. DEV. =-22.3 DEGREES REMARK 500 PRO A 275 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 LEU A 311 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 LEU A 311 C - N - CA ANGL. DEV. = 21.7 DEGREES REMARK 500 GLU A 319 C - N - CA ANGL. DEV. =-17.1 DEGREES REMARK 500 LEU A 320 C - N - CA ANGL. DEV. = 20.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 121.28 49.70 REMARK 500 ALA A 61 -143.18 173.46 REMARK 500 ASN A 194 -108.13 62.26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 310 LEU A 311 -146.22 DBREF 1UC1 A 1 471 UNP P45452 MM13_HUMAN 1 471 SEQRES 1 A 471 MET HIS PRO GLY VAL LEU ALA ALA PHE LEU PHE LEU SER SEQRES 2 A 471 TRP THR HIS CYS ARG ALA LEU PRO LEU PRO SER GLY GLY SEQRES 3 A 471 ASP GLU ASP ASP LEU SER GLU GLU ASP LEU GLN PHE ALA SEQRES 4 A 471 GLU ARG TYR LEU ARG SER TYR TYR HIS PRO THR ASN LEU SEQRES 5 A 471 ALA GLY ILE LEU LYS GLU ASN ALA ALA SER SER MET THR SEQRES 6 A 471 GLU ARG LEU ARG GLU MET GLN SER PHE PHE GLY LEU GLU SEQRES 7 A 471 VAL THR GLY LYS LEU ASP ASP ASN THR LEU ASP VAL MET SEQRES 8 A 471 LYS LYS PRO ARG CYS GLY VAL PRO ASP VAL GLY GLU TYR SEQRES 9 A 471 ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET ASN SEQRES 10 A 471 LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET THR SEQRES 11 A 471 HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE LYS SEQRES 12 A 471 VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG LEU SEQRES 13 A 471 HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY ILE SEQRES 14 A 471 LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SER SEQRES 15 A 471 GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN TYR SEQRES 16 A 471 GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP THR SEQRES 17 A 471 SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA ALA SEQRES 18 A 471 HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER LYS SEQRES 19 A 471 ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR THR SEQRES 20 A 471 GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL GLN SEQRES 21 A 471 GLY ILE GLN SER LEU TYR GLY PRO GLY ASP GLU ASP PRO SEQRES 22 A 471 ASN PRO LYS HIS PRO LYS THR PRO ASP LYS CYS ASP PRO SEQRES 23 A 471 SER LEU SER LEU ASP ALA ILE THR SER LEU ARG GLY GLU SEQRES 24 A 471 THR MET ILE PHE LYS ASP ARG PHE PHE TRP ARG LEU HIS SEQRES 25 A 471 PRO GLN GLN VAL ASP ALA GLU LEU PHE LEU THR LYS SER SEQRES 26 A 471 PHE TRP PRO GLU LEU PRO ASN ARG ILE ASP ALA ALA TYR SEQRES 27 A 471 GLU HIS PRO SER HIS ASP LEU ILE PHE ILE PHE ARG GLY SEQRES 28 A 471 ARG LYS PHE TRP ALA LEU ASN GLY TYR ASP ILE LEU GLU SEQRES 29 A 471 GLY TYR PRO LYS LYS ILE SER GLU LEU GLY LEU PRO LYS SEQRES 30 A 471 GLU VAL LYS LYS ILE SER ALA ALA VAL HIS PHE GLU ASP SEQRES 31 A 471 THR GLY LYS THR LEU LEU PHE SER GLY ASN GLN VAL TRP SEQRES 32 A 471 ARG TYR ASP ASP THR ASN HIS ILE MET ASP LYS ASP TYR SEQRES 33 A 471 PRO ARG LEU ILE GLU GLU ASP PHE PRO GLY ILE GLY ASP SEQRES 34 A 471 LYS VAL ASP ALA VAL TYR GLU LYS ASN GLY TYR ILE TYR SEQRES 35 A 471 PHE PHE ASN GLY PRO ILE GLN PHE GLU TYR SER ILE TRP SEQRES 36 A 471 SER ASN ARG ILE VAL ARG VAL MET PRO ALA ASN SER ILE SEQRES 37 A 471 LEU TRP CYS HELIX 1 1 GLU A 34 TYR A 47 1 14 HELIX 2 2 SER A 62 GLY A 76 1 15 HELIX 3 3 ASP A 84 LYS A 93 1 10 HELIX 4 4 THR A 130 THR A 149 1 20 HELIX 5 5 ASN A 215 GLY A 229 1 15 HELIX 6 6 PRO A 255 TYR A 266 1 12 HELIX 7 7 LYS A 324 PHE A 326 5 3 HELIX 8 8 SER A 371 GLY A 374 5 4 HELIX 9 9 ILE A 420 PHE A 424 1 5 HELIX 10 10 ALA A 465 LEU A 469 1 5 SHEET 1 A 5 ASN A 152 ARG A 155 0 SHEET 2 A 5 ASN A 117 ILE A 122 1 N LEU A 118 O ASN A 152 SHEET 3 A 5 ILE A 163 GLY A 168 1 O ILE A 165 N ARG A 121 SHEET 4 A 5 ALA A 199 ASP A 202 1 O ALA A 199 N SER A 166 SHEET 5 A 5 ALA A 186 ALA A 188 -1 N HIS A 187 O HIS A 200 SHEET 1 B 4 ALA A 292 SER A 295 0 SHEET 2 B 4 THR A 300 PHE A 303 -1 O PHE A 303 N ALA A 292 SHEET 3 B 4 PHE A 307 ARG A 310 -1 O TRP A 309 N ILE A 302 SHEET 4 B 4 ALA A 318 LEU A 322 -1 O PHE A 321 N PHE A 308 SHEET 1 C 4 ALA A 336 HIS A 340 0 SHEET 2 C 4 LEU A 345 ARG A 350 -1 O PHE A 349 N ALA A 336 SHEET 3 C 4 LYS A 353 ASN A 358 -1 O LEU A 357 N ILE A 346 SHEET 4 C 4 ASP A 361 ILE A 362 -1 O ASP A 361 N ASN A 358 SHEET 1 D 4 ALA A 336 HIS A 340 0 SHEET 2 D 4 LEU A 345 ARG A 350 -1 O PHE A 349 N ALA A 336 SHEET 3 D 4 LYS A 353 ASN A 358 -1 O LEU A 357 N ILE A 346 SHEET 4 D 4 LYS A 368 LYS A 369 -1 O LYS A 368 N PHE A 354 SHEET 1 E 4 ALA A 384 VAL A 386 0 SHEET 2 E 4 LYS A 393 SER A 398 -1 O PHE A 397 N ALA A 384 SHEET 3 E 4 GLN A 401 ASP A 406 -1 O GLN A 401 N SER A 398 SHEET 4 E 4 ILE A 411 MET A 412 -1 O ILE A 411 N ASP A 406 SHEET 1 F 4 ALA A 384 VAL A 386 0 SHEET 2 F 4 LYS A 393 SER A 398 -1 O PHE A 397 N ALA A 384 SHEET 3 F 4 GLN A 401 ASP A 406 -1 O GLN A 401 N SER A 398 SHEET 4 F 4 ARG A 418 LEU A 419 -1 O ARG A 418 N VAL A 402 SHEET 1 G 4 ALA A 433 TYR A 435 0 SHEET 2 G 4 TYR A 442 ASN A 445 -1 O PHE A 444 N ALA A 433 SHEET 3 G 4 ILE A 448 PHE A 450 -1 O PHE A 450 N PHE A 443 SHEET 4 G 4 VAL A 462 PRO A 464 -1 O MET A 463 N GLN A 449 CISPEP 1 TYR A 366 PRO A 367 0 1.30 CISPEP 2 TYR A 416 PRO A 417 0 1.96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 73 0 0 10 29 0 0 6 0 0 0 37 END