HEADER PROTEIN BINDING 23-JUL-04 1U4A TITLE SOLUTION STRUCTURE OF HUMAN SUMO-3 C47S COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 SYNONYM: SMALL UBIQUITIN-LIKE MODIFIER PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: SUMO3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS BETA BETA ALPHA BETA BETA ALPHA BETA FOLD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.DING,Y.XU,H.DAI,Y.TANG,J.WU,Y.SHI REVDAT 2 24-FEB-09 1U4A 1 VERSN REVDAT 1 08-MAR-05 1U4A 0 JRNL AUTH H.DING,Y.XU,Q.CHEN,H.DAI,Y.TANG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF HUMAN SUMO-3 C47S AND ITS JRNL TITL 2 BINDING SURFACE FOR UBC9 JRNL REF BIOCHEMISTRY V. 44 2790 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15723523 JRNL DOI 10.1021/BI0477586 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MOLMOL 2K.2 REMARK 3 AUTHORS : KORADI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1540 RESTRAINTS, 1406 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 78 DIHEDRAL ANGLE RESTRAINTS, 56 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS REMARK 4 REMARK 4 1U4A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023226. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.25 REMARK 210 IONIC STRENGTH : 25MM PHOSPHATE BUFFER, 75MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8MM 15N-LABELED PROTEIN; REMARK 210 0.6MM 13C,15N-LABELED PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, SPARKY 3, CNS REMARK 210 1.1, CSI 1.0, MOLMOL 2K.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 93 REMARK 465 GLU A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 25 31.84 -90.06 REMARK 500 1 ARG A 35 31.86 -97.86 REMARK 500 1 LEU A 52 -161.39 -122.25 REMARK 500 1 GLN A 56 78.12 -160.84 REMARK 500 1 THR A 71 -57.85 -171.01 REMARK 500 1 ASP A 79 -48.46 -175.01 REMARK 500 1 THR A 90 96.14 69.58 REMARK 500 2 HIS A 36 31.29 -156.93 REMARK 500 2 LEU A 52 -167.72 -71.45 REMARK 500 2 GLN A 56 77.70 -160.79 REMARK 500 2 THR A 71 -55.49 -164.08 REMARK 500 2 GLU A 78 69.68 -152.73 REMARK 500 2 ASP A 79 -69.38 -172.63 REMARK 500 2 GLN A 87 33.25 -98.88 REMARK 500 2 GLN A 88 153.62 68.44 REMARK 500 3 ASP A 25 32.30 -96.45 REMARK 500 3 ARG A 35 39.62 -92.48 REMARK 500 3 HIS A 36 33.39 -147.17 REMARK 500 3 LEU A 52 -154.38 -112.20 REMARK 500 3 GLN A 56 77.56 -160.67 REMARK 500 3 PRO A 65 106.82 -54.09 REMARK 500 3 THR A 71 -55.19 -168.43 REMARK 500 3 ASP A 79 -56.36 -169.07 REMARK 500 4 ASP A 15 97.77 63.14 REMARK 500 4 ARG A 35 33.20 -94.00 REMARK 500 4 HIS A 36 28.71 -145.30 REMARK 500 4 LEU A 52 -163.42 -128.62 REMARK 500 4 MET A 54 30.30 -96.32 REMARK 500 4 GLN A 56 78.02 -160.23 REMARK 500 4 THR A 71 -56.72 -166.04 REMARK 500 4 GLU A 78 -52.35 -126.19 REMARK 500 4 ASP A 79 -58.09 -148.94 REMARK 500 4 THR A 90 -60.34 -146.63 REMARK 500 5 ASP A 25 39.10 -92.62 REMARK 500 5 HIS A 36 40.89 -172.03 REMARK 500 5 LEU A 52 -161.00 -127.33 REMARK 500 5 GLN A 56 77.75 -160.69 REMARK 500 5 PRO A 65 96.71 -53.96 REMARK 500 5 THR A 69 32.74 -89.42 REMARK 500 5 THR A 71 -57.15 -166.00 REMARK 500 5 GLU A 78 -59.21 -148.35 REMARK 500 5 GLU A 80 93.71 -166.14 REMARK 500 5 THR A 90 -53.07 -142.84 REMARK 500 6 ASP A 25 41.17 -178.14 REMARK 500 6 SER A 27 106.22 -166.53 REMARK 500 6 ARG A 35 59.49 -94.07 REMARK 500 6 HIS A 36 39.84 -168.62 REMARK 500 6 GLN A 50 -70.19 -73.45 REMARK 500 6 LEU A 52 -159.92 -119.43 REMARK 500 6 GLN A 56 77.71 -160.21 REMARK 500 6 THR A 71 -54.82 -171.30 REMARK 500 6 GLU A 78 -64.54 -136.48 REMARK 500 6 ASP A 79 -48.17 -134.24 REMARK 500 6 THR A 90 -64.78 75.76 REMARK 500 7 LEU A 52 -159.32 -120.60 REMARK 500 7 GLN A 56 77.90 -160.49 REMARK 500 7 THR A 71 -56.27 -163.35 REMARK 500 7 ASP A 79 -64.07 -173.29 REMARK 500 8 GLN A 24 43.11 -92.32 REMARK 500 8 ASP A 25 34.38 -158.92 REMARK 500 8 HIS A 36 23.73 -151.95 REMARK 500 8 GLN A 50 -71.99 -78.48 REMARK 500 8 LEU A 52 -164.94 -127.24 REMARK 500 8 GLN A 56 77.92 -160.48 REMARK 500 8 THR A 69 33.39 -88.81 REMARK 500 8 THR A 71 -54.25 -169.89 REMARK 500 8 GLU A 78 -49.54 -135.20 REMARK 500 8 ASP A 79 -41.72 -169.41 REMARK 500 8 THR A 90 94.08 62.63 REMARK 500 9 HIS A 36 32.87 -158.97 REMARK 500 9 LEU A 52 -157.89 -114.41 REMARK 500 9 GLN A 56 77.52 -157.68 REMARK 500 9 THR A 71 -56.53 -167.75 REMARK 500 9 ASP A 79 -54.44 -170.86 REMARK 500 9 GLN A 89 -52.54 -169.30 REMARK 500 10 LEU A 52 -178.73 -62.41 REMARK 500 10 GLN A 56 77.88 -160.66 REMARK 500 10 PRO A 65 93.55 -52.70 REMARK 500 10 THR A 69 25.36 -166.56 REMARK 500 10 THR A 71 -58.05 -167.82 REMARK 500 10 GLU A 78 61.29 -164.81 REMARK 500 10 ASP A 79 -60.46 -179.27 REMARK 500 10 GLN A 88 93.85 63.07 REMARK 500 11 ASP A 15 86.39 -157.02 REMARK 500 11 HIS A 16 119.83 -161.56 REMARK 500 11 ASP A 25 33.27 -99.45 REMARK 500 11 HIS A 36 33.24 -157.59 REMARK 500 11 LEU A 52 -78.92 -91.15 REMARK 500 11 GLN A 56 77.83 -160.62 REMARK 500 11 PRO A 65 105.88 -52.96 REMARK 500 11 THR A 69 30.49 -91.29 REMARK 500 11 THR A 71 -55.27 -160.68 REMARK 500 11 GLU A 78 31.29 -146.83 REMARK 500 11 ASP A 79 -51.29 -148.62 REMARK 500 11 GLN A 88 178.87 65.86 REMARK 500 12 HIS A 36 35.27 -159.84 REMARK 500 12 LEU A 52 -154.64 -119.78 REMARK 500 12 GLN A 56 77.63 -157.96 REMARK 500 12 GLU A 68 36.48 -79.51 REMARK 500 12 THR A 71 -54.95 -163.13 REMARK 500 12 GLU A 78 -58.14 -132.03 REMARK 500 12 ASP A 79 -66.91 -145.82 REMARK 500 12 GLN A 88 -74.14 -61.07 REMARK 500 12 THR A 90 82.29 42.86 REMARK 500 13 SER A 27 114.15 -162.21 REMARK 500 13 ARG A 35 58.10 -90.78 REMARK 500 13 HIS A 36 32.63 -164.62 REMARK 500 13 LEU A 52 -153.54 -107.99 REMARK 500 13 GLN A 56 77.78 -160.76 REMARK 500 13 THR A 71 -55.74 -168.82 REMARK 500 13 GLU A 78 -76.98 -125.02 REMARK 500 13 ASP A 79 26.62 -158.57 REMARK 500 13 GLU A 80 102.87 -174.86 REMARK 500 13 GLN A 88 98.08 60.85 REMARK 500 13 GLN A 89 -54.47 -157.58 REMARK 500 14 HIS A 36 29.32 -150.58 REMARK 500 14 LEU A 52 -166.00 -74.71 REMARK 500 14 GLN A 56 77.99 -160.48 REMARK 500 14 THR A 69 19.33 -151.70 REMARK 500 14 THR A 71 -56.85 -168.11 REMARK 500 14 MET A 77 -177.81 -66.77 REMARK 500 14 GLU A 78 -53.91 -146.46 REMARK 500 14 ASP A 79 -53.81 -146.12 REMARK 500 14 GLN A 88 130.27 72.78 REMARK 500 14 THR A 90 97.43 60.65 REMARK 500 15 HIS A 36 34.13 -154.96 REMARK 500 15 GLN A 50 -76.27 -71.83 REMARK 500 15 GLN A 56 77.66 -160.80 REMARK 500 15 THR A 71 -55.22 -168.39 REMARK 500 15 GLU A 78 -52.44 -123.47 REMARK 500 15 ASP A 79 -57.13 -159.73 REMARK 500 15 GLN A 89 -70.42 -140.07 REMARK 500 16 ARG A 35 52.56 -90.76 REMARK 500 16 HIS A 36 35.48 -160.59 REMARK 500 16 GLN A 50 -70.62 -87.93 REMARK 500 16 LEU A 52 -160.03 -112.02 REMARK 500 16 GLN A 56 77.93 -160.85 REMARK 500 16 PRO A 65 93.82 -56.16 REMARK 500 16 THR A 71 -58.59 -169.00 REMARK 500 16 ASP A 79 -64.54 -149.16 REMARK 500 17 ASP A 25 40.71 -91.73 REMARK 500 17 ARG A 35 48.88 -101.23 REMARK 500 17 HIS A 36 32.83 -156.05 REMARK 500 17 GLN A 50 -75.13 -81.34 REMARK 500 17 LEU A 52 -160.31 -114.27 REMARK 500 17 GLN A 56 77.75 -160.32 REMARK 500 17 GLU A 68 40.08 -79.87 REMARK 500 17 THR A 69 16.59 -141.14 REMARK 500 17 THR A 71 -57.34 -167.38 REMARK 500 17 GLU A 78 51.34 -168.81 REMARK 500 17 ASP A 79 -54.40 -170.79 REMARK 500 17 GLN A 88 179.25 67.49 REMARK 500 17 THR A 90 78.03 44.97 REMARK 500 18 ARG A 35 30.16 -95.06 REMARK 500 18 LEU A 52 -159.61 -123.08 REMARK 500 18 GLN A 56 77.97 -160.50 REMARK 500 18 GLU A 78 -62.01 -124.19 REMARK 500 18 ASP A 79 -60.96 -156.41 REMARK 500 18 GLN A 88 33.10 -96.27 REMARK 500 18 THR A 90 -62.65 -134.05 REMARK 500 19 GLN A 24 48.21 -84.75 REMARK 500 19 ASP A 25 32.50 -148.58 REMARK 500 19 ARG A 35 43.59 -94.69 REMARK 500 19 HIS A 36 35.46 -151.30 REMARK 500 19 GLN A 50 -75.81 -74.90 REMARK 500 19 LEU A 52 -163.26 -124.90 REMARK 500 19 GLN A 56 78.03 -160.62 REMARK 500 19 GLU A 68 81.35 -68.85 REMARK 500 19 THR A 69 -28.09 -177.66 REMARK 500 19 THR A 71 -55.99 -162.17 REMARK 500 19 GLU A 78 -43.90 -138.68 REMARK 500 19 ASP A 79 -67.74 -122.94 REMARK 500 19 THR A 90 78.65 -109.86 REMARK 500 20 HIS A 36 35.41 -165.05 REMARK 500 20 GLN A 50 -72.41 -73.16 REMARK 500 20 LEU A 52 -152.50 -103.74 REMARK 500 20 GLN A 56 78.04 -160.70 REMARK 500 20 GLU A 68 47.90 -75.78 REMARK 500 20 THR A 69 18.01 -148.35 REMARK 500 20 THR A 71 -56.70 -164.23 REMARK 500 20 GLU A 78 -52.97 -137.92 REMARK 500 20 ASP A 79 -61.71 -156.61 REMARK 500 20 THR A 90 -60.28 -101.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A5R RELATED DB: PDB REMARK 900 THE FIRST DETERMINED 3D STRUCTURE OF HUMAN SUMO FAMILY DBREF 1U4A A 14 92 UNP P55854 SUMO3_HUMAN 14 92 SEQADV 1U4A SER A 47 UNP P55854 CYS 47 ENGINEERED SEQADV 1U4A LEU A 93 UNP P55854 EXPRESSION TAG SEQADV 1U4A GLU A 94 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 95 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 96 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 97 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 98 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 99 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 100 UNP P55854 EXPRESSION TAG SEQRES 1 A 87 ASN ASP HIS ILE ASN LEU LYS VAL ALA GLY GLN ASP GLY SEQRES 2 A 87 SER VAL VAL GLN PHE LYS ILE LYS ARG HIS THR PRO LEU SEQRES 3 A 87 SER LYS LEU MET LYS ALA TYR SER GLU ARG GLN GLY LEU SEQRES 4 A 87 SER MET ARG GLN ILE ARG PHE ARG PHE ASP GLY GLN PRO SEQRES 5 A 87 ILE ASN GLU THR ASP THR PRO ALA GLN LEU GLU MET GLU SEQRES 6 A 87 ASP GLU ASP THR ILE ASP VAL PHE GLN GLN GLN THR GLY SEQRES 7 A 87 GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 38 GLY A 51 1 14 HELIX 2 2 THR A 71 MET A 77 1 7 SHEET 1 A 5 SER A 27 ILE A 33 0 SHEET 2 A 5 ILE A 17 GLY A 23 -1 N GLY A 23 O SER A 27 SHEET 3 A 5 ASP A 81 PHE A 86 1 O ILE A 83 N ALA A 22 SHEET 4 A 5 ARG A 58 ARG A 60 -1 N ARG A 58 O PHE A 86 SHEET 5 A 5 PRO A 65 ILE A 66 -1 O ILE A 66 N PHE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 273 0 0 2 5 0 0 6 0 0 0 7 END