HEADER HYDROLASE 08-JUL-04 1TYI TITLE STRUCTURE OF HISTONE DEACETYLASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HD1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS HYDROLASE, NUCLEAR PROTEIN, CHROMATIN REGULATOR, KEYWDS 2 TRANSCRIPTION REGULATION, REPRESSOR, UBL CONJUGATION EXPDTA THEORETICAL MODEL AUTHOR S.C.MALLENA,H.SINDHU,B.GAYATRI,P.R.PRAVEEN REVDAT 1 27-JUL-04 1TYI 0 JRNL AUTH S.C.MALLENA,H.SINDHU,B.GAYATRI,P.R.PRAVEEN JRNL TITL STRUCTURE OF HISTONE DEACETYLASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.TAUNTON,C.A.HASSIG,S.L.SCHREIBER REMARK 1 TITL A MAMMALIAN HISTONE DEACETYLASE RELATED TO THE REMARK 1 TITL 2 YEAST TRANSCRIPTIONAL REGULATOR RPD3P REMARK 1 REF SCIENCE V. 272 408 1996 REMARK 1 REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER - INSIGHT II 2000 REMARK 3 AUTHORS : ANDREJ SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TYI COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-2004. REMARK 100 THE RCSB ID CODE IS RCSB023032. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THEORETICAL MODEL DEVELPOED USING IN-SILICO TOOLS - REMARK 220 MODELER. MODELER IS AN AUTOMATED HOMOLOGY MODELING REMARK 220 SCHEME DESIGNED TO FIND THE MOST PROBABLE THREE REMARK 220 DIMENSIONAL STRUCTURE OF A PROTEIN, GIVEN ITS AMINO ACID REMARK 220 SEQUENCE AND ITS ALIGNMENT WITH RELATED STRUCTURES. IT REMARK 220 DERIVES 3D PROTEIN MODELS WITHOUT THE TIME CONSUMING REMARK 220 SEPARATE STAGES OF CORE REGION IDENTIFICATION AND LOOP REMARK 220 REGION BUILDING OR SEARCHING THAT ARE INHERENT TO MANUAL REMARK 220 HOMOLOGY MODELING SCHEMES. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 THR A -2 REMARK 465 ARG A -1 REMARK 465 ARG A 0 REMARK 465 PHE A 328 REMARK 465 GLY A 329 REMARK 465 PRO A 330 REMARK 465 ASP A 331 REMARK 465 PHE A 332 REMARK 465 LYS A 333 REMARK 465 LEU A 334 REMARK 465 HIS A 335 REMARK 465 ILE A 336 REMARK 465 SER A 337 REMARK 465 PRO A 338 REMARK 465 SER A 339 REMARK 465 ASN A 340 REMARK 465 MET A 341 REMARK 465 THR A 342 REMARK 465 ASN A 343 REMARK 465 GLN A 344 REMARK 465 ASN A 345 REMARK 465 THR A 346 REMARK 465 ASN A 347 REMARK 465 GLU A 348 REMARK 465 TYR A 349 REMARK 465 LEU A 350 REMARK 465 GLU A 351 REMARK 465 LYS A 352 REMARK 465 ILE A 353 REMARK 465 LYS A 354 REMARK 465 GLN A 355 REMARK 465 ARG A 356 REMARK 465 LEU A 357 REMARK 465 PHE A 358 REMARK 465 GLU A 359 REMARK 465 ASN A 360 REMARK 465 LEU A 361 REMARK 465 ARG A 362 REMARK 465 MET A 363 REMARK 465 LEU A 364 REMARK 465 PRO A 365 REMARK 465 HIS A 366 REMARK 465 ALA A 367 REMARK 465 PRO A 368 REMARK 465 GLY A 369 REMARK 465 VAL A 370 REMARK 465 GLN A 371 REMARK 465 MET A 372 REMARK 465 GLN A 373 REMARK 465 ALA A 374 REMARK 465 ILE A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 ALA A 379 REMARK 465 ILE A 380 REMARK 465 PRO A 381 REMARK 465 GLU A 382 REMARK 465 GLU A 383 REMARK 465 SER A 384 REMARK 465 GLY A 385 REMARK 465 ASP A 386 REMARK 465 GLU A 387 REMARK 465 ASP A 388 REMARK 465 GLU A 389 REMARK 465 ASP A 390 REMARK 465 ASP A 391 REMARK 465 PRO A 392 REMARK 465 ASP A 393 REMARK 465 LYS A 394 REMARK 465 ARG A 395 REMARK 465 ILE A 396 REMARK 465 SER A 397 REMARK 465 ILE A 398 REMARK 465 CYS A 399 REMARK 465 SER A 400 REMARK 465 SER A 401 REMARK 465 ASP A 402 REMARK 465 LYS A 403 REMARK 465 ARG A 404 REMARK 465 ILE A 405 REMARK 465 ALA A 406 REMARK 465 CYS A 407 REMARK 465 GLU A 408 REMARK 465 GLU A 409 REMARK 465 GLU A 410 REMARK 465 PHE A 411 REMARK 465 SER A 412 REMARK 465 ASP A 413 REMARK 465 SER A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 GLU A 417 REMARK 465 GLY A 418 REMARK 465 GLU A 419 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 ARG A 422 REMARK 465 LYS A 423 REMARK 465 ASN A 424 REMARK 465 SER A 425 REMARK 465 SER A 426 REMARK 465 ASN A 427 REMARK 465 PHE A 428 REMARK 465 LYS A 429 REMARK 465 LYS A 430 REMARK 465 ALA A 431 REMARK 465 LYS A 432 REMARK 465 ARG A 433 REMARK 465 VAL A 434 REMARK 465 LYS A 435 REMARK 465 THR A 436 REMARK 465 GLU A 437 REMARK 465 ASP A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 GLU A 441 REMARK 465 LYS A 442 REMARK 465 ASP A 443 REMARK 465 PRO A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 446 REMARK 465 LYS A 447 REMARK 465 LYS A 448 REMARK 465 GLU A 449 REMARK 465 VAL A 450 REMARK 465 THR A 451 REMARK 465 GLU A 452 REMARK 465 GLU A 453 REMARK 465 GLU A 454 REMARK 465 LYS A 455 REMARK 465 THR A 456 REMARK 465 LYS A 457 REMARK 465 GLU A 458 REMARK 465 GLU A 459 REMARK 465 LYS A 460 REMARK 465 PRO A 461 REMARK 465 GLU A 462 REMARK 465 ALA A 463 REMARK 465 LYS A 464 REMARK 465 GLY A 465 REMARK 465 VAL A 466 REMARK 465 LYS A 467 REMARK 465 GLU A 468 REMARK 465 GLU A 469 REMARK 465 VAL A 470 REMARK 465 LYS A 471 REMARK 465 LEU A 472 REMARK 465 ALA A 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 13 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 199 GLY A 200 -30.76 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C3P RELATED DB: PDB DBREF 1TYI A -8 473 UNP Q13547 HDA1_HUMAN 1 482 SEQRES 1 A 482 MET ALA GLN THR GLN GLY THR ARG ARG LYS VAL CYS TYR SEQRES 2 A 482 TYR TYR ASP GLY ASP VAL GLY ASN TYR TYR TYR GLY GLN SEQRES 3 A 482 GLY HIS PRO MET LYS PRO HIS ARG ILE ARG MET THR HIS SEQRES 4 A 482 ASN LEU LEU LEU ASN TYR GLY LEU TYR ARG LYS MET GLU SEQRES 5 A 482 ILE TYR ARG PRO HIS LYS ALA ASN ALA GLU GLU MET THR SEQRES 6 A 482 LYS TYR HIS SER ASP ASP TYR ILE LYS PHE LEU ARG SER SEQRES 7 A 482 ILE ARG PRO ASP ASN MET SER GLU TYR SER LYS GLN MET SEQRES 8 A 482 GLN ARG PHE ASN VAL GLY GLU ASP CYS PRO VAL PHE ASP SEQRES 9 A 482 GLY LEU PHE GLU PHE CYS GLN LEU SER THR GLY GLY SER SEQRES 10 A 482 VAL ALA SER ALA VAL LYS LEU ASN LYS GLN GLN THR ASP SEQRES 11 A 482 ILE ALA VAL ASN TRP ALA GLY GLY LEU HIS HIS ALA LYS SEQRES 12 A 482 LYS SER GLU ALA SER GLY PHE CYS TYR VAL ASN ASP ILE SEQRES 13 A 482 VAL LEU ALA ILE LEU GLU LEU LEU LYS TYR HIS GLN ARG SEQRES 14 A 482 VAL LEU TYR ILE ASP ILE ASP ILE HIS HIS GLY ASP GLY SEQRES 15 A 482 VAL GLU GLU ALA PHE TYR THR THR ASP ARG VAL MET THR SEQRES 16 A 482 VAL SER PHE HIS LYS TYR GLY GLU TYR PHE PRO GLY THR SEQRES 17 A 482 GLY ASP LEU ARG ASP ILE GLY ALA GLY LYS GLY LYS TYR SEQRES 18 A 482 TYR ALA VAL ASN TYR PRO LEU ARG ASP GLY ILE ASP ASP SEQRES 19 A 482 GLU SER TYR GLU ALA ILE PHE LYS PRO VAL MET SER LYS SEQRES 20 A 482 VAL MET GLU MET PHE GLN PRO SER ALA VAL VAL LEU GLN SEQRES 21 A 482 CYS GLY SER ASP SER LEU SER GLY ASP ARG LEU GLY CYS SEQRES 22 A 482 PHE ASN LEU THR ILE LYS GLY HIS ALA LYS CYS VAL GLU SEQRES 23 A 482 PHE VAL LYS SER PHE ASN LEU PRO MET LEU MET LEU GLY SEQRES 24 A 482 GLY GLY GLY TYR THR ILE ARG ASN VAL ALA ARG CYS TRP SEQRES 25 A 482 THR TYR GLU THR ALA VAL ALA LEU ASP THR GLU ILE PRO SEQRES 26 A 482 ASN GLU LEU PRO TYR ASN ASP TYR PHE GLU TYR PHE GLY SEQRES 27 A 482 PRO ASP PHE LYS LEU HIS ILE SER PRO SER ASN MET THR SEQRES 28 A 482 ASN GLN ASN THR ASN GLU TYR LEU GLU LYS ILE LYS GLN SEQRES 29 A 482 ARG LEU PHE GLU ASN LEU ARG MET LEU PRO HIS ALA PRO SEQRES 30 A 482 GLY VAL GLN MET GLN ALA ILE PRO GLU ASP ALA ILE PRO SEQRES 31 A 482 GLU GLU SER GLY ASP GLU ASP GLU ASP ASP PRO ASP LYS SEQRES 32 A 482 ARG ILE SER ILE CYS SER SER ASP LYS ARG ILE ALA CYS SEQRES 33 A 482 GLU GLU GLU PHE SER ASP SER GLU GLU GLU GLY GLU GLY SEQRES 34 A 482 GLY ARG LYS ASN SER SER ASN PHE LYS LYS ALA LYS ARG SEQRES 35 A 482 VAL LYS THR GLU ASP GLU LYS GLU LYS ASP PRO GLU GLU SEQRES 36 A 482 LYS LYS GLU VAL THR GLU GLU GLU LYS THR LYS GLU GLU SEQRES 37 A 482 LYS PRO GLU ALA LYS GLY VAL LYS GLU GLU VAL LYS LEU SEQRES 38 A 482 ALA HELIX 1 1 ASP A 7 TYR A 13 5 7 HELIX 2 2 ARG A 25 GLY A 37 1 13 HELIX 3 3 ARG A 40 MET A 42 5 3 HELIX 4 4 ASN A 51 LYS A 57 1 7 HELIX 5 5 SER A 60 ASN A 74 1 15 HELIX 6 6 SER A 79 PHE A 85 1 7 HELIX 7 7 PHE A 98 GLN A 118 1 21 HELIX 8 8 ASN A 145 LYS A 156 1 12 HELIX 9 9 GLY A 171 TYR A 179 1 9 HELIX 10 10 ALA A 207 LYS A 211 5 5 HELIX 11 11 ASP A 224 PHE A 243 1 20 HELIX 12 12 GLY A 253 LEU A 257 5 5 HELIX 13 13 THR A 268 LEU A 284 1 17 HELIX 14 14 THR A 295 ASP A 312 1 18 SHEET 1 A 8 ILE A 44 TYR A 45 0 SHEET 2 A 8 VAL A 2 TYR A 5 1 N TYR A 4 O TYR A 45 SHEET 3 A 8 ILE A 122 ASN A 125 1 O VAL A 124 N TYR A 5 SHEET 4 A 8 LEU A 287 LEU A 289 1 O MET A 288 N ASN A 125 SHEET 5 A 8 ALA A 247 GLN A 251 1 N LEU A 250 O LEU A 289 SHEET 6 A 8 VAL A 161 ASP A 165 1 N ILE A 164 O VAL A 249 SHEET 7 A 8 VAL A 184 LYS A 191 1 O MET A 185 N VAL A 161 SHEET 8 A 8 ALA A 214 LEU A 219 1 O TYR A 217 N SER A 188 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 230 0 0 14 8 0 0 6 0 0 0 38 END