HEADER OXIDOREDUCTASE 05-JUL-04 1TXG TITLE STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(P)+]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NADP, H-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.94; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEGPD1 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SAKASEGAWA,C.H.HAGEMEIER,R.K.THAUER,L.O.ESSEN,S.SHIMA REVDAT 3 13-JUL-11 1TXG 1 VERSN REVDAT 2 24-FEB-09 1TXG 1 VERSN REVDAT 1 07-DEC-04 1TXG 0 JRNL AUTH S.SAKASEGAWA,C.H.HAGEMEIER,R.K.THAUER,L.O.ESSEN,S.SHIMA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE GPSA GENE PRODUCT JRNL TITL 2 OF ARCHAEOGLOBUS FULGIDUS: A GLYCEROL-3-PHOSPHATE JRNL TITL 3 DEHYDROGENASE WITH AN UNUSUAL NADP+ PREFERENCE JRNL REF PROTEIN SCI. V. 13 3161 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15557260 JRNL DOI 10.1110/PS.04980304 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 753 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5314 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5052 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7180 ; 1.641 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11714 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 5.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5804 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1042 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1175 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6039 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3096 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 537 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.366 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3310 ; 0.990 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5340 ; 1.844 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 3.140 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1840 ; 4.958 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 335 6 REMARK 3 1 B 1 B 335 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 5118 ; 0.52 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 5118 ; 2.72 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TXG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, DIOXANE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.79300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1112 O HOH A 1391 1.78 REMARK 500 O HOH A 1024 O HOH A 1391 1.84 REMARK 500 OE1 GLU A 130 O HOH A 1093 1.84 REMARK 500 N NH4 B 1011 O HOH B 1114 1.98 REMARK 500 OD1 ASN A 193 O HOH A 1381 2.00 REMARK 500 O HOH B 1381 O HOH B 1382 2.05 REMARK 500 O HOH B 1183 O HOH B 1376 2.07 REMARK 500 ND2 ASN A 226 O HOH A 1275 2.08 REMARK 500 N NH4 B 1011 O HOH B 1381 2.10 REMARK 500 O PHE A 243 CD1 PHE A 248 2.13 REMARK 500 O HOH A 1227 O HOH A 1297 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1168 O HOH A 1202 2757 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 228 SD MET B 228 CE -0.481 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 111 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 181 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 250 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 299 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 299 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -120.52 -112.09 REMARK 500 ALA A 139 48.47 -144.93 REMARK 500 LYS B 96 -93.83 -120.50 REMARK 500 ALA B 139 46.97 -148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1379 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH B1350 DISTANCE = 5.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EVY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3- REMARK 900 PHOSPHATE DEHYDROGENASE DBREF 1TXG A 1 335 UNP O29390 GPDA_ARCFU 1 335 DBREF 1TXG B 1 335 UNP O29390 GPDA_ARCFU 1 335 SEQRES 1 A 335 MET ILE VAL SER ILE LEU GLY ALA GLY ALA MET GLY SER SEQRES 2 A 335 ALA LEU SER VAL PRO LEU VAL ASP ASN GLY ASN GLU VAL SEQRES 3 A 335 ARG ILE TRP GLY THR GLU PHE ASP THR GLU ILE LEU LYS SEQRES 4 A 335 SER ILE SER ALA GLY ARG GLU HIS PRO ARG LEU GLY VAL SEQRES 5 A 335 LYS LEU ASN GLY VAL GLU ILE PHE TRP PRO GLU GLN LEU SEQRES 6 A 335 GLU LYS CYS LEU GLU ASN ALA GLU VAL VAL LEU LEU GLY SEQRES 7 A 335 VAL SER THR ASP GLY VAL LEU PRO VAL MET SER ARG ILE SEQRES 8 A 335 LEU PRO TYR LEU LYS ASP GLN TYR ILE VAL LEU ILE SER SEQRES 9 A 335 LYS GLY LEU ILE ASP PHE ASP ASN SER VAL LEU THR VAL SEQRES 10 A 335 PRO GLU ALA VAL TRP ARG LEU LYS HIS ASP LEU ARG GLU SEQRES 11 A 335 ARG THR VAL ALA ILE THR GLY PRO ALA ILE ALA ARG GLU SEQRES 12 A 335 VAL ALA LYS ARG MET PRO THR THR VAL VAL PHE SER SER SEQRES 13 A 335 PRO SER GLU SER SER ALA ASN LYS MET LYS GLU ILE PHE SEQRES 14 A 335 GLU THR GLU TYR PHE GLY VAL GLU VAL THR THR ASP ILE SEQRES 15 A 335 ILE GLY THR GLU ILE THR SER ALA LEU LYS ASN VAL TYR SEQRES 16 A 335 SER ILE ALA ILE ALA TRP ILE ARG GLY TYR GLU SER ARG SEQRES 17 A 335 LYS ASN VAL GLU MET SER ASN ALA LYS GLY VAL ILE ALA SEQRES 18 A 335 THR ARG ALA ILE ASN GLU MET ALA GLU LEU ILE GLU ILE SEQRES 19 A 335 LEU GLY GLY ASP ARG GLU THR ALA PHE GLY LEU SER GLY SEQRES 20 A 335 PHE GLY ASP LEU ILE ALA THR PHE ARG GLY GLY ARG ASN SEQRES 21 A 335 GLY MET LEU GLY GLU LEU LEU GLY LYS GLY LEU SER ILE SEQRES 22 A 335 ASP GLU ALA MET GLU GLU LEU GLU ARG ARG GLY VAL GLY SEQRES 23 A 335 VAL VAL GLU GLY TYR LYS THR ALA GLU LYS ALA TYR ARG SEQRES 24 A 335 LEU SER SER LYS ILE ASN ALA ASP THR LYS LEU LEU ASP SEQRES 25 A 335 SER ILE TYR ARG VAL LEU TYR GLU GLY LEU LYS VAL GLU SEQRES 26 A 335 GLU VAL LEU PHE GLU LEU ALA THR PHE LYS SEQRES 1 B 335 MET ILE VAL SER ILE LEU GLY ALA GLY ALA MET GLY SER SEQRES 2 B 335 ALA LEU SER VAL PRO LEU VAL ASP ASN GLY ASN GLU VAL SEQRES 3 B 335 ARG ILE TRP GLY THR GLU PHE ASP THR GLU ILE LEU LYS SEQRES 4 B 335 SER ILE SER ALA GLY ARG GLU HIS PRO ARG LEU GLY VAL SEQRES 5 B 335 LYS LEU ASN GLY VAL GLU ILE PHE TRP PRO GLU GLN LEU SEQRES 6 B 335 GLU LYS CYS LEU GLU ASN ALA GLU VAL VAL LEU LEU GLY SEQRES 7 B 335 VAL SER THR ASP GLY VAL LEU PRO VAL MET SER ARG ILE SEQRES 8 B 335 LEU PRO TYR LEU LYS ASP GLN TYR ILE VAL LEU ILE SER SEQRES 9 B 335 LYS GLY LEU ILE ASP PHE ASP ASN SER VAL LEU THR VAL SEQRES 10 B 335 PRO GLU ALA VAL TRP ARG LEU LYS HIS ASP LEU ARG GLU SEQRES 11 B 335 ARG THR VAL ALA ILE THR GLY PRO ALA ILE ALA ARG GLU SEQRES 12 B 335 VAL ALA LYS ARG MET PRO THR THR VAL VAL PHE SER SER SEQRES 13 B 335 PRO SER GLU SER SER ALA ASN LYS MET LYS GLU ILE PHE SEQRES 14 B 335 GLU THR GLU TYR PHE GLY VAL GLU VAL THR THR ASP ILE SEQRES 15 B 335 ILE GLY THR GLU ILE THR SER ALA LEU LYS ASN VAL TYR SEQRES 16 B 335 SER ILE ALA ILE ALA TRP ILE ARG GLY TYR GLU SER ARG SEQRES 17 B 335 LYS ASN VAL GLU MET SER ASN ALA LYS GLY VAL ILE ALA SEQRES 18 B 335 THR ARG ALA ILE ASN GLU MET ALA GLU LEU ILE GLU ILE SEQRES 19 B 335 LEU GLY GLY ASP ARG GLU THR ALA PHE GLY LEU SER GLY SEQRES 20 B 335 PHE GLY ASP LEU ILE ALA THR PHE ARG GLY GLY ARG ASN SEQRES 21 B 335 GLY MET LEU GLY GLU LEU LEU GLY LYS GLY LEU SER ILE SEQRES 22 B 335 ASP GLU ALA MET GLU GLU LEU GLU ARG ARG GLY VAL GLY SEQRES 23 B 335 VAL VAL GLU GLY TYR LYS THR ALA GLU LYS ALA TYR ARG SEQRES 24 B 335 LEU SER SER LYS ILE ASN ALA ASP THR LYS LEU LEU ASP SEQRES 25 B 335 SER ILE TYR ARG VAL LEU TYR GLU GLY LEU LYS VAL GLU SEQRES 26 B 335 GLU VAL LEU PHE GLU LEU ALA THR PHE LYS HET SO4 B1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 B1006 5 HET SO4 B1007 5 HET SO4 B1008 5 HET NH4 B1011 1 HET GOL A1009 6 HET GOL B1010 6 HETNAM SO4 SULFATE ION HETNAM NH4 AMMONIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 NH4 H4 N 1+ FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 HOH *753(H2 O) HELIX 1 1 GLY A 9 GLY A 23 1 15 HELIX 2 2 THR A 31 PHE A 33 5 3 HELIX 3 3 ASP A 34 ALA A 43 1 10 HELIX 4 4 TRP A 61 GLU A 63 5 3 HELIX 5 5 GLN A 64 GLU A 70 1 7 HELIX 6 6 SER A 80 ASP A 82 5 3 HELIX 7 7 GLY A 83 LEU A 92 1 10 HELIX 8 8 VAL A 117 ARG A 123 1 7 HELIX 9 9 LEU A 128 GLU A 130 5 3 HELIX 10 10 ILE A 140 LYS A 146 1 7 HELIX 11 11 SER A 158 GLU A 170 1 13 HELIX 12 12 ASP A 181 ASN A 210 1 30 HELIX 13 13 MET A 213 GLY A 236 1 24 HELIX 14 14 ASP A 238 GLY A 244 5 7 HELIX 15 15 GLY A 247 THR A 254 1 8 HELIX 16 16 GLY A 257 LYS A 269 1 13 HELIX 17 17 SER A 272 ARG A 283 1 12 HELIX 18 18 VAL A 288 ILE A 304 1 17 HELIX 19 19 THR A 308 GLU A 320 1 13 HELIX 20 20 LYS A 323 THR A 333 1 11 HELIX 21 21 GLY B 9 ASN B 22 1 14 HELIX 22 22 ASP B 34 ALA B 43 1 10 HELIX 23 23 TRP B 61 GLU B 63 5 3 HELIX 24 24 GLN B 64 GLU B 70 1 7 HELIX 25 25 SER B 80 ASP B 82 5 3 HELIX 26 26 GLY B 83 LEU B 92 1 10 HELIX 27 27 VAL B 117 LYS B 125 1 9 HELIX 28 28 HIS B 126 GLU B 130 5 5 HELIX 29 29 ILE B 140 LYS B 146 1 7 HELIX 30 30 SER B 158 GLU B 170 1 13 HELIX 31 31 ASP B 181 ASN B 210 1 30 HELIX 32 32 MET B 213 GLY B 236 1 24 HELIX 33 33 ASP B 238 GLY B 244 5 7 HELIX 34 34 GLY B 247 THR B 254 1 8 HELIX 35 35 GLY B 257 LYS B 269 1 13 HELIX 36 36 SER B 272 ARG B 283 1 12 HELIX 37 37 VAL B 288 ASN B 305 1 18 HELIX 38 38 THR B 308 GLU B 320 1 13 HELIX 39 39 LYS B 323 GLU B 326 5 4 HELIX 40 40 VAL B 327 THR B 333 1 7 SHEET 1 A 8 VAL A 57 PHE A 60 0 SHEET 2 A 8 GLU A 25 TRP A 29 1 N ILE A 28 O PHE A 60 SHEET 3 A 8 ILE A 2 LEU A 6 1 N ILE A 5 O ARG A 27 SHEET 4 A 8 VAL A 74 LEU A 77 1 O LEU A 76 N LEU A 6 SHEET 5 A 8 TYR A 99 LEU A 102 1 O VAL A 101 N VAL A 75 SHEET 6 A 8 THR A 132 THR A 136 1 O VAL A 133 N ILE A 100 SHEET 7 A 8 THR A 150 SER A 155 -1 O SER A 155 N ALA A 134 SHEET 8 A 8 PHE A 174 THR A 179 1 O GLU A 177 N PHE A 154 SHEET 1 B 2 LEU A 107 PHE A 110 0 SHEET 2 B 2 SER A 113 THR A 116 -1 O LEU A 115 N ILE A 108 SHEET 1 C 8 VAL B 57 PHE B 60 0 SHEET 2 C 8 GLU B 25 TRP B 29 1 N ILE B 28 O PHE B 60 SHEET 3 C 8 ILE B 2 LEU B 6 1 N ILE B 5 O ARG B 27 SHEET 4 C 8 VAL B 74 LEU B 77 1 O LEU B 76 N LEU B 6 SHEET 5 C 8 TYR B 99 LEU B 102 1 O VAL B 101 N VAL B 75 SHEET 6 C 8 THR B 132 THR B 136 1 O VAL B 133 N ILE B 100 SHEET 7 C 8 THR B 150 SER B 155 -1 O VAL B 153 N THR B 136 SHEET 8 C 8 PHE B 174 THR B 179 1 O GLU B 177 N PHE B 154 SHEET 1 D 2 LEU B 107 PHE B 110 0 SHEET 2 D 2 SER B 113 THR B 116 -1 O LEU B 115 N ILE B 108 LINK OE1 GLU B 119 N NH4 B1011 1555 1555 1.78 SITE 1 AC1 3 ARG B 147 HOH B1175 HOH B1292 SITE 1 AC2 4 LYS A 53 ASN A 55 HOH A1070 HOH A1126 SITE 1 AC3 5 LYS A 105 LYS A 192 ASN A 193 HOH A1078 SITE 2 AC3 5 HOH A1239 SITE 1 AC4 5 ARG A 256 GLY A 257 GLY A 258 HOH A1052 SITE 2 AC4 5 HOH A1159 SITE 1 AC5 6 ARG A 203 ARG A 256 GOL A1009 HOH A1067 SITE 2 AC5 6 HOH A1158 HOH A1334 SITE 1 AC6 7 ARG B 256 GLY B 257 GLY B 258 HOH B1065 SITE 2 AC6 7 HOH B1197 HOH B1201 HOH B1243 SITE 1 AC7 6 LYS B 105 LYS B 192 ASN B 193 HOH B1120 SITE 2 AC7 6 HOH B1145 HOH B1280 SITE 1 AC8 3 GLY B 258 ARG B 259 HOH B1341 SITE 1 AC9 6 LEU B 115 THR B 116 GLU B 119 HOH B1114 SITE 2 AC9 6 HOH B1381 HOH B1382 SITE 1 BC1 8 ALA A 200 ARG A 203 LYS A 217 PHE A 255 SITE 2 BC1 8 SO4 A1005 HOH A1020 HOH A1031 HOH A1112 SITE 1 BC2 7 ALA B 200 ARG B 203 LYS B 217 PHE B 255 SITE 2 BC2 7 HOH B1022 HOH B1059 HOH B1248 CRYST1 63.223 67.586 81.156 90.00 106.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015817 0.000000 0.004698 0.00000 SCALE2 0.000000 0.014796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012854 0.00000 MASTER 406 0 11 40 20 0 19 6 0 0 0 52 END