HEADER TRANSCRIPTION 23-JUN-04 1TTY TITLE SOLUTION STRUCTURE OF SIGMA A REGION 4 FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPOD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIGMA-A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: RPOD, SIGA, TM1451; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-SI; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-30B KEYWDS SIGMA FACTOR, RNA POLYMERASE, HELIX-TURN-HELIX, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR L.J.LAMBERT,Y.WEI,V.SCHIRF,B.DEMELER,M.H.WERNER REVDAT 2 24-FEB-09 1TTY 1 VERSN REVDAT 1 23-NOV-04 1TTY 0 JRNL AUTH L.J.LAMBERT,Y.WEI,V.SCHIRF,B.DEMELER,M.H.WERNER JRNL TITL T4 ASIA BLOCKS DNA RECOGNITION BY REMODELING JRNL TITL 2 SIGMA(70) REGION 4 JRNL REF EMBO J. V. 23 2952 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15257291 JRNL DOI 10.1038/SJ.EMBOJ.7600312 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : CLORE AND SCHWEITERS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TTY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB022898. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : PHOSPHATE BUFFERED SALINE, PH REMARK 210 7.0, 1 MM PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.9.3, NMRPIPE 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING IN REMARK 210 TORSION ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-22 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLY A 399 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 317 -74.71 -155.63 REMARK 500 1 MET A 320 143.23 176.71 REMARK 500 1 ARG A 321 40.23 -157.16 REMARK 500 1 GLU A 322 -65.13 -91.25 REMARK 500 1 PHE A 360 -91.30 -90.64 REMARK 500 1 ASN A 361 27.45 -173.68 REMARK 500 1 ARG A 379 66.27 -69.77 REMARK 500 1 HIS A 380 -64.67 -179.53 REMARK 500 1 SER A 384 43.28 179.05 REMARK 500 1 ASP A 395 30.62 -84.74 REMARK 500 2 ARG A 317 -67.80 -96.11 REMARK 500 2 MET A 320 -78.21 61.93 REMARK 500 2 GLU A 322 -63.64 -98.70 REMARK 500 2 PHE A 360 -92.01 -90.47 REMARK 500 2 ASN A 361 29.11 -177.35 REMARK 500 2 ARG A 379 71.55 43.75 REMARK 500 2 HIS A 380 78.07 -166.05 REMARK 500 2 PRO A 381 102.03 -51.35 REMARK 500 2 SER A 382 -50.45 -179.88 REMARK 500 2 SER A 384 55.68 -150.21 REMARK 500 2 MET A 394 -80.95 -162.11 REMARK 500 2 ASP A 395 41.56 -162.61 REMARK 500 2 ASN A 397 31.20 -149.57 REMARK 500 2 GLU A 398 -48.96 -162.76 REMARK 500 3 MET A 318 167.81 175.19 REMARK 500 3 GLU A 322 -63.91 -97.23 REMARK 500 3 PHE A 360 -88.40 -91.61 REMARK 500 3 ASN A 361 30.39 -175.01 REMARK 500 3 SER A 382 -80.74 179.13 REMARK 500 3 MET A 394 -81.60 -91.11 REMARK 500 3 ASP A 395 22.82 -163.23 REMARK 500 3 ASN A 397 -54.81 -149.96 REMARK 500 4 MET A 318 122.61 60.91 REMARK 500 4 LEU A 319 37.58 -178.10 REMARK 500 4 ARG A 321 104.87 58.85 REMARK 500 4 GLU A 322 -61.76 -96.45 REMARK 500 4 PHE A 360 -92.66 -93.57 REMARK 500 4 ASN A 361 31.95 -178.53 REMARK 500 4 HIS A 380 -66.19 -179.97 REMARK 500 4 SER A 384 60.63 178.74 REMARK 500 5 ALA A 315 93.66 -179.10 REMARK 500 5 ARG A 317 112.67 -176.34 REMARK 500 5 ARG A 321 -176.81 50.45 REMARK 500 5 GLU A 322 -65.15 -97.02 REMARK 500 5 PHE A 360 -88.73 -91.75 REMARK 500 5 ASN A 361 30.02 -174.37 REMARK 500 5 HIS A 380 -59.61 -179.70 REMARK 500 5 MET A 394 -71.43 -86.94 REMARK 500 5 ASP A 395 23.61 -159.64 REMARK 500 5 ASN A 397 -54.97 -151.96 REMARK 500 6 ARG A 317 30.01 -140.58 REMARK 500 6 MET A 318 74.70 -110.75 REMARK 500 6 MET A 320 -80.33 -132.09 REMARK 500 6 PHE A 360 -89.57 -91.14 REMARK 500 6 ASN A 361 28.85 -174.63 REMARK 500 6 MET A 394 -9.27 -158.22 REMARK 500 7 ALA A 315 -52.33 -166.31 REMARK 500 7 MET A 316 -70.67 66.19 REMARK 500 7 MET A 318 151.57 61.27 REMARK 500 7 ARG A 321 94.82 49.57 REMARK 500 7 PHE A 360 -91.79 -90.69 REMARK 500 7 ASN A 361 29.00 -176.83 REMARK 500 7 PRO A 381 97.33 -48.55 REMARK 500 7 SER A 382 -73.53 -167.26 REMARK 500 7 MET A 394 23.85 -158.59 REMARK 500 7 ASP A 395 17.69 -154.57 REMARK 500 7 GLU A 396 79.26 -159.98 REMARK 500 7 ASN A 397 -70.97 -90.19 REMARK 500 7 GLU A 398 34.84 -163.12 REMARK 500 8 MET A 316 28.94 -157.51 REMARK 500 8 MET A 318 -175.75 49.80 REMARK 500 8 LEU A 319 83.39 61.59 REMARK 500 8 MET A 320 -78.05 -103.78 REMARK 500 8 ARG A 321 101.27 54.56 REMARK 500 8 GLU A 322 -63.21 -96.39 REMARK 500 8 PHE A 360 -92.07 -91.27 REMARK 500 8 ASN A 361 30.35 -177.52 REMARK 500 8 SER A 382 -78.49 -66.35 REMARK 500 8 MET A 394 -72.77 -87.78 REMARK 500 8 ASP A 395 23.70 -160.16 REMARK 500 9 ALA A 315 -79.82 63.65 REMARK 500 9 LEU A 319 148.50 63.63 REMARK 500 9 MET A 320 141.63 62.35 REMARK 500 9 PHE A 360 -92.11 -93.09 REMARK 500 9 ASN A 361 29.84 -177.43 REMARK 500 9 PRO A 381 -179.21 -50.72 REMARK 500 9 SER A 384 -79.18 -111.21 REMARK 500 9 MET A 394 -8.12 -161.86 REMARK 500 10 GLU A 314 61.42 -157.50 REMARK 500 10 MET A 318 -77.81 62.41 REMARK 500 10 ARG A 321 97.60 53.87 REMARK 500 10 GLU A 322 -68.43 -98.80 REMARK 500 10 PHE A 360 -92.60 -94.23 REMARK 500 10 ASN A 361 31.22 -178.55 REMARK 500 10 ARG A 379 70.15 45.58 REMARK 500 10 SER A 382 -39.20 -176.79 REMARK 500 10 MET A 394 29.70 -169.51 REMARK 500 10 ASP A 395 11.09 -149.00 REMARK 500 11 GLU A 314 140.40 62.69 REMARK 500 11 ARG A 321 96.82 49.62 REMARK 500 11 PHE A 360 -89.85 -93.53 REMARK 500 11 ASN A 361 29.87 -176.39 REMARK 500 11 PRO A 381 89.48 -60.97 REMARK 500 11 MET A 394 -81.37 -156.68 REMARK 500 11 ASP A 395 49.51 -161.61 REMARK 500 12 MET A 318 171.88 174.48 REMARK 500 12 LEU A 319 -175.85 60.45 REMARK 500 12 MET A 320 125.86 68.43 REMARK 500 12 PHE A 360 -90.57 -92.16 REMARK 500 12 ASN A 361 29.63 -175.03 REMARK 500 12 ARG A 379 -72.33 -158.61 REMARK 500 12 HIS A 380 -64.93 -178.07 REMARK 500 12 ARG A 383 27.64 -156.10 REMARK 500 12 MET A 394 -12.78 -154.62 REMARK 500 12 ASN A 397 25.59 -149.10 REMARK 500 13 ARG A 317 -48.00 -133.29 REMARK 500 13 ARG A 321 80.14 60.70 REMARK 500 13 GLU A 322 -64.06 -97.53 REMARK 500 13 PHE A 360 -92.04 -90.96 REMARK 500 13 ASN A 361 31.46 -177.66 REMARK 500 13 SER A 382 -81.79 179.67 REMARK 500 13 MET A 394 -82.88 -157.12 REMARK 500 13 ASP A 395 36.81 -163.77 REMARK 500 14 ARG A 317 -70.83 -173.14 REMARK 500 14 MET A 318 126.29 -175.80 REMARK 500 14 PHE A 360 -90.47 -90.92 REMARK 500 14 ASN A 361 28.76 -176.11 REMARK 500 14 ARG A 383 79.93 -178.07 REMARK 500 14 MET A 394 -78.80 -157.86 REMARK 500 14 ASP A 395 60.08 -158.33 REMARK 500 15 ARG A 317 -164.44 60.22 REMARK 500 15 ARG A 321 113.15 60.57 REMARK 500 15 GLU A 322 -63.63 -96.48 REMARK 500 15 PHE A 360 -90.81 -92.91 REMARK 500 15 ASN A 361 30.39 -177.40 REMARK 500 15 MET A 394 -74.98 -88.47 REMARK 500 15 ASP A 395 26.24 -160.72 REMARK 500 15 ASN A 397 -47.93 -151.71 REMARK 500 15 GLU A 398 -44.57 -162.93 REMARK 500 16 MET A 316 36.10 -176.40 REMARK 500 16 PHE A 360 -88.45 -92.28 REMARK 500 16 ASN A 361 30.14 -175.33 REMARK 500 16 SER A 382 -81.29 -179.73 REMARK 500 16 MET A 394 -72.38 -85.05 REMARK 500 16 ASP A 395 22.30 -158.62 REMARK 500 16 ASN A 397 -46.60 -150.68 REMARK 500 17 ALA A 315 112.21 60.98 REMARK 500 17 MET A 316 63.68 -172.44 REMARK 500 17 GLU A 322 -61.52 -96.67 REMARK 500 17 PHE A 360 -88.85 -91.58 REMARK 500 17 ASN A 361 30.41 -175.97 REMARK 500 17 ARG A 379 -72.20 -158.37 REMARK 500 17 ASN A 397 -71.28 -92.71 REMARK 500 18 MET A 316 -38.38 -176.70 REMARK 500 18 MET A 318 130.57 70.33 REMARK 500 18 PHE A 360 -90.29 -92.76 REMARK 500 18 ASN A 361 31.17 -177.74 REMARK 500 18 SER A 382 -79.87 179.62 REMARK 500 19 LEU A 319 -75.78 -97.05 REMARK 500 19 PHE A 360 -92.15 -96.31 REMARK 500 19 ASN A 361 32.30 -179.17 REMARK 500 19 SER A 384 -81.83 -116.16 REMARK 500 19 MET A 394 -31.23 -157.22 REMARK 500 19 ASN A 397 -70.89 -90.50 REMARK 500 19 GLU A 398 -45.19 -158.16 REMARK 500 20 ARG A 317 -69.25 -142.67 REMARK 500 20 PHE A 360 -94.10 -96.58 REMARK 500 20 ASN A 361 32.29 -179.18 REMARK 500 20 SER A 382 -80.79 -179.61 REMARK 500 20 MET A 394 -20.67 -164.04 REMARK 500 21 PHE A 360 -90.93 -89.25 REMARK 500 21 ASN A 361 28.05 -173.68 REMARK 500 21 ARG A 379 -70.92 -156.18 REMARK 500 21 PRO A 381 175.20 -48.26 REMARK 500 21 SER A 382 109.52 -48.66 REMARK 500 21 ARG A 383 -41.74 -159.39 REMARK 500 21 SER A 384 -165.25 -59.14 REMARK 500 21 GLU A 396 -76.34 -74.92 REMARK 500 22 ALA A 315 85.81 -169.26 REMARK 500 22 ARG A 317 114.42 61.38 REMARK 500 22 GLU A 322 -63.97 -97.91 REMARK 500 22 PHE A 360 -91.29 -90.69 REMARK 500 22 ASN A 361 31.44 -177.45 REMARK 500 22 ARG A 379 -73.78 -154.65 REMARK 500 22 HIS A 380 -176.62 -179.58 REMARK 500 22 SER A 382 163.05 -47.09 REMARK 500 22 ASN A 397 -71.46 -90.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TTY A 313 399 UNP P77994 RPOD_THEMA 313 399 SEQRES 1 A 87 LYS GLU ALA MET ARG MET LEU MET ARG GLU GLU LEU GLU SEQRES 2 A 87 LYS VAL LEU LYS THR LEU SER PRO ARG GLU ALA MET VAL SEQRES 3 A 87 LEU ARG MET ARG TYR GLY LEU LEU ASP GLY LYS PRO LYS SEQRES 4 A 87 THR LEU GLU GLU VAL GLY GLN TYR PHE ASN VAL THR ARG SEQRES 5 A 87 GLU ARG ILE ARG GLN ILE GLU VAL LYS ALA LEU ARG LYS SEQRES 6 A 87 LEU ARG HIS PRO SER ARG SER LYS TYR LEU LYS SER LEU SEQRES 7 A 87 LEU SER LEU MET ASP GLU ASN GLU GLY HELIX 1 1 GLU A 322 LYS A 329 1 8 HELIX 2 2 SER A 332 GLY A 344 1 13 HELIX 3 3 THR A 352 PHE A 360 1 9 HELIX 4 4 THR A 363 ARG A 379 1 17 HELIX 5 5 SER A 384 MET A 394 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 260 0 0 5 0 0 0 6 0 0 0 7 END