HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-JUN-04 1TO3 TITLE STRUCTURE OF YIHT FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALDOLASE YIHT; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: YIHT, STM4022; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26B KEYWDS BETA-ALPHA BARREL, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 27-OCT-21 1TO3 1 SEQADV REVDAT 4 03-FEB-21 1TO3 1 AUTHOR REMARK SEQADV LINK REVDAT 3 24-FEB-09 1TO3 1 VERSN REVDAT 2 25-JAN-05 1TO3 1 AUTHOR KEYWDS REMARK REVDAT 1 22-JUN-04 1TO3 0 JRNL AUTH J.GORMAN,L.SHAPIRO JRNL TITL STRUCTURE OF YIHT FROM SALMONELLA TYPHIMURIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 3.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.368 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2263 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2133 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3057 ; 1.467 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4950 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 5.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.692 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;17.564 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.662 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2509 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 434 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 521 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2262 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1272 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 592 ; 0.119 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2309 ; 0.956 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 898 ; 1.526 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 748 ; 2.319 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : VERTICAL AND HORIZONTAL FOCUSING REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG 4000, 0.1M CACODYLATE PH 6.5, REMARK 280 1.5M NAKPHOSPHATE PH 8.5, 8% GLYCEROL; CRYOPROTECTANT - 2% PEG REMARK 280 4000, 0.1M CACODYLATE PH 6.5, 1.5M NAKPHOSPHATE PH 8.5, 30% REMARK 280 GLYCEROL, 1M NABR, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.36300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.68150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.04450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.04450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.68150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.36300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.36300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 77.04450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.68150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.57200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.68150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 77.04450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.57200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.57200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.36300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS STATE THE BIOLOGICAL UNIT IS LIKELY A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 141.14400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 SER A 0 REMARK 465 ARG A 292 REMARK 465 GLU A 293 REMARK 465 GLY A 294 REMARK 465 GLY A 295 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 179 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 239 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 -99.01 -118.18 REMARK 500 CYS A 70 14.40 -157.44 REMARK 500 ASN A 78 49.98 29.02 REMARK 500 TYR A 199 29.57 49.86 REMARK 500 ASN A 219 44.21 -103.19 REMARK 500 VAL A 272 -54.20 -122.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T764 RELATED DB: TARGETDB DBREF 1TO3 A 2 292 UNP Q9L7R9 YIHT_SALTY 2 292 SEQADV 1TO3 MSE A -1 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 SER A 0 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 LEU A 1 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 MSE A 18 UNP Q9L7R9 MET 18 MODIFIED RESIDUE SEQADV 1TO3 MSE A 27 UNP Q9L7R9 MET 27 MODIFIED RESIDUE SEQADV 1TO3 MSE A 30 UNP Q9L7R9 MET 30 MODIFIED RESIDUE SEQADV 1TO3 MSE A 86 UNP Q9L7R9 MET 86 MODIFIED RESIDUE SEQADV 1TO3 MSE A 141 UNP Q9L7R9 MET 141 MODIFIED RESIDUE SEQADV 1TO3 MSE A 196 UNP Q9L7R9 MET 196 MODIFIED RESIDUE SEQADV 1TO3 MSE A 220 UNP Q9L7R9 MET 220 MODIFIED RESIDUE SEQADV 1TO3 MSE A 242 UNP Q9L7R9 MET 242 MODIFIED RESIDUE SEQADV 1TO3 MSE A 268 UNP Q9L7R9 MET 268 MODIFIED RESIDUE SEQADV 1TO3 MSE A 287 UNP Q9L7R9 MET 287 MODIFIED RESIDUE SEQADV 1TO3 MSE A 288 UNP Q9L7R9 MET 288 MODIFIED RESIDUE SEQADV 1TO3 GLY A 289 UNP Q9L7R9 ALA 289 ENGINEERED MUTATION SEQADV 1TO3 GLU A 293 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 GLY A 294 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 GLY A 295 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 SER A 296 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 297 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 298 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 299 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 300 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 301 UNP Q9L7R9 CLONING ARTIFACT SEQADV 1TO3 HIS A 302 UNP Q9L7R9 CLONING ARTIFACT SEQRES 1 A 304 MSE SER LEU ASN ASN TYR THR ILE LYS ASP ILE THR ARG SEQRES 2 A 304 ALA SER GLY GLY PHE ALA MSE LEU ALA VAL ASP GLN ARG SEQRES 3 A 304 GLU ALA MSE ARG LEU MSE PHE ALA ALA ALA GLY ALA LYS SEQRES 4 A 304 THR PRO VAL ALA ASP SER VAL LEU THR ASP PHE LYS VAL SEQRES 5 A 304 ASN ALA ALA LYS ILE LEU SER PRO TYR ALA SER ALA VAL SEQRES 6 A 304 LEU LEU ASP GLN GLN PHE CYS TYR ARG GLN ALA VAL GLU SEQRES 7 A 304 GLN ASN ALA VAL ALA LYS SER CYS ALA MSE ILE VAL ALA SEQRES 8 A 304 ALA ASP ASP PHE ILE PRO GLY ASN GLY ILE PRO VAL ASP SEQRES 9 A 304 ASN VAL VAL LEU ASP LYS LYS ILE ASN ALA GLN ALA VAL SEQRES 10 A 304 LYS ARG ASP GLY ALA LYS ALA LEU LYS LEU LEU VAL LEU SEQRES 11 A 304 TRP ARG SER ASP GLU ASP ALA GLN GLN ARG LEU ASN MSE SEQRES 12 A 304 VAL LYS GLU PHE ASN GLU LEU CYS HIS SER ASN GLY LEU SEQRES 13 A 304 LEU SER ILE ILE GLU PRO VAL VAL ARG PRO PRO ARG CYS SEQRES 14 A 304 GLY ASP LYS PHE ASP ARG GLU GLN ALA ILE ILE ASP ALA SEQRES 15 A 304 ALA LYS GLU LEU GLY ASP SER GLY ALA ASP LEU TYR LYS SEQRES 16 A 304 VAL GLU MSE PRO LEU TYR GLY LYS GLY ALA ARG SER ASP SEQRES 17 A 304 LEU LEU THR ALA SER GLN ARG LEU ASN GLY HIS ILE ASN SEQRES 18 A 304 MSE PRO TRP VAL ILE LEU SER SER GLY VAL ASP GLU LYS SEQRES 19 A 304 LEU PHE PRO ARG ALA VAL ARG VAL ALA MSE GLU ALA GLY SEQRES 20 A 304 ALA SER GLY PHE LEU ALA GLY ARG ALA VAL TRP SER SER SEQRES 21 A 304 VAL ILE GLY LEU PRO ASP THR GLU LEU MSE LEU ARG ASP SEQRES 22 A 304 VAL SER ALA PRO LYS LEU GLN ARG LEU GLY GLU ILE VAL SEQRES 23 A 304 ASP GLU MSE MSE GLY LYS ARG ARG GLU GLY GLY SER HIS SEQRES 24 A 304 HIS HIS HIS HIS HIS MODRES 1TO3 MSE A 18 MET SELENOMETHIONINE MODRES 1TO3 MSE A 27 MET SELENOMETHIONINE MODRES 1TO3 MSE A 30 MET SELENOMETHIONINE MODRES 1TO3 MSE A 86 MET SELENOMETHIONINE MODRES 1TO3 MSE A 141 MET SELENOMETHIONINE MODRES 1TO3 MSE A 196 MET SELENOMETHIONINE MODRES 1TO3 MSE A 220 MET SELENOMETHIONINE MODRES 1TO3 MSE A 242 MET SELENOMETHIONINE MODRES 1TO3 MSE A 268 MET SELENOMETHIONINE MODRES 1TO3 MSE A 287 MET SELENOMETHIONINE MODRES 1TO3 MSE A 288 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 27 8 HET MSE A 30 8 HET MSE A 86 8 HET MSE A 141 8 HET MSE A 196 8 HET MSE A 220 8 HET MSE A 242 8 HET MSE A 268 8 HET MSE A 287 8 HET MSE A 288 8 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 A 305 5 HET BR A 306 1 HET BR A 307 1 HET BR A 308 1 HET BR A 309 1 HET BR A 310 1 HET BR A 311 1 HET BR A 312 1 HET BR A 313 1 HET BR A 314 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM BR BROMIDE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 BR 9(BR 1-) FORMUL 14 HOH *120(H2 O) HELIX 1 1 THR A 5 THR A 10 5 6 HELIX 2 2 ARG A 24 ALA A 34 1 11 HELIX 3 3 ALA A 41 SER A 57 1 17 HELIX 4 4 PRO A 58 ALA A 60 5 3 HELIX 5 5 CYS A 70 GLN A 77 1 8 HELIX 6 6 ASN A 111 ASP A 118 1 8 HELIX 7 7 ASP A 134 SER A 151 1 18 HELIX 8 8 ASP A 172 GLY A 185 1 14 HELIX 9 9 MSE A 196 LYS A 201 5 6 HELIX 10 10 ALA A 203 HIS A 217 1 15 HELIX 11 11 LEU A 233 ALA A 244 1 12 HELIX 12 12 GLY A 252 SER A 257 1 6 HELIX 13 13 SER A 258 ILE A 260 5 3 HELIX 14 14 ASP A 264 VAL A 272 1 9 HELIX 15 15 VAL A 272 LYS A 290 1 19 SHEET 1 A 9 PHE A 16 ALA A 20 0 SHEET 2 A 9 ALA A 62 LEU A 65 1 O LEU A 64 N LEU A 19 SHEET 3 A 9 ALA A 85 ALA A 89 1 O ALA A 89 N LEU A 65 SHEET 4 A 9 ALA A 122 TRP A 129 1 O ALA A 122 N VAL A 88 SHEET 5 A 9 LEU A 155 VAL A 162 1 O VAL A 161 N TRP A 129 SHEET 6 A 9 LEU A 191 VAL A 194 1 O LYS A 193 N ILE A 158 SHEET 7 A 9 TRP A 222 ILE A 224 1 O VAL A 223 N VAL A 194 SHEET 8 A 9 GLY A 248 ALA A 251 1 O LEU A 250 N ILE A 224 SHEET 9 A 9 PHE A 16 ALA A 20 1 N PHE A 16 O PHE A 249 SHEET 1 B 2 ASP A 91 GLY A 96 0 SHEET 2 B 2 ILE A 99 LEU A 106 -1 O ASN A 103 N ILE A 94 LINK C ALA A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N LEU A 19 1555 1555 1.33 LINK C ALA A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ARG A 28 1555 1555 1.33 LINK C LEU A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N PHE A 31 1555 1555 1.33 LINK C ALA A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ILE A 87 1555 1555 1.33 LINK C ASN A 140 N MSE A 141 1555 1555 1.34 LINK C MSE A 141 N VAL A 142 1555 1555 1.32 LINK C GLU A 195 N MSE A 196 1555 1555 1.32 LINK C MSE A 196 N PRO A 197 1555 1555 1.33 LINK C ASN A 219 N MSE A 220 1555 1555 1.32 LINK C MSE A 220 N PRO A 221 1555 1555 1.32 LINK C ALA A 241 N MSE A 242 1555 1555 1.32 LINK C MSE A 242 N GLU A 243 1555 1555 1.32 LINK C LEU A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N LEU A 269 1555 1555 1.33 LINK C GLU A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N MSE A 288 1555 1555 1.34 LINK C MSE A 288 N GLY A 289 1555 1555 1.33 CISPEP 1 THR A 38 PRO A 39 0 -4.18 SITE 1 AC1 3 LYS A 182 ARG A 213 HIS A 217 SITE 1 AC2 8 GLN A 23 GLU A 159 LYS A 193 ARG A 253 SITE 2 AC2 8 PO4 A 305 HOH A 372 HOH A 378 HOH A 394 SITE 1 AC3 7 LYS A 193 SER A 226 SER A 227 ALA A 251 SITE 2 AC3 7 GLY A 252 ARG A 253 PO4 A 304 SITE 1 AC4 1 GLY A 202 SITE 1 AC5 3 PRO A 100 VAL A 101 ARG A 163 SITE 1 AC6 1 VAL A 40 SITE 1 AC7 3 ASP A 172 HOH A 357 HOH A 384 SITE 1 AC8 2 ARG A 204 ARG A 239 SITE 1 AC9 4 ASP A 47 PHE A 48 ASN A 51 HOH A 386 SITE 1 BC1 2 ASP A 264 LEU A 267 SITE 1 BC2 3 ARG A 11 SER A 61 BR A 314 SITE 1 BC3 3 ARG A 11 ALA A 12 BR A 313 CRYST1 141.144 141.144 102.726 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009735 0.00000 MASTER 416 0 23 15 11 0 14 6 0 0 0 24 END