HEADER BLOOD COAGULATION 20-MAY-94 1TMR TITLE THE STRUCTURE OF A 19 RESIDUE FRAGMENT FROM THE C-LOOP OF TITLE 2 THE FOURTH EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF TITLE 3 THROMBOMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOMODULIN PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS BLOOD COAGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.ADLER,M.SETO,D.NITECKI,D.R.LIGHT,J.MORSER REVDAT 2 24-FEB-09 1TMR 1 VERSN REVDAT 1 08-JUN-95 1TMR 0 JRNL AUTH M.ADLER,M.H.SETO,D.E.NITECKI,J.H.LIN,D.R.LIGHT, JRNL AUTH 2 J.MORSER JRNL TITL THE STRUCTURE OF A 19-RESIDUE FRAGMENT FROM THE JRNL TITL 2 C-LOOP OF THE FOURTH EPIDERMAL GROWTH FACTOR-LIKE JRNL TITL 3 DOMAIN OF THROMBOMODULIN. JRNL REF J.BIOL.CHEM. V. 270 23366 1995 JRNL REFN ISSN 0021-9258 JRNL PMID 7559494 JRNL DOI 10.1074/JBC.270.40.23366 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII REMARK 3 AUTHORS : BIOSYM,INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TMR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 1 GLU A 12 CD GLU A 12 OE2 0.112 REMARK 500 2 GLU A 4 CD GLU A 4 OE2 0.109 REMARK 500 2 GLU A 12 CD GLU A 12 OE2 0.112 REMARK 500 3 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 3 GLU A 12 CD GLU A 12 OE2 0.112 REMARK 500 4 GLU A 4 CD GLU A 4 OE2 0.107 REMARK 500 4 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 4 HIS A 14 CG HIS A 14 CD2 0.055 REMARK 500 5 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 5 GLU A 12 CD GLU A 12 OE2 0.113 REMARK 500 6 GLU A 4 CD GLU A 4 OE2 0.107 REMARK 500 6 GLU A 12 CD GLU A 12 OE2 0.112 REMARK 500 7 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 7 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 8 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 8 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 9 GLU A 4 CD GLU A 4 OE2 0.107 REMARK 500 9 GLU A 12 CD GLU A 12 OE2 0.113 REMARK 500 10 GLU A 4 CD GLU A 4 OE2 0.110 REMARK 500 10 GLU A 12 CD GLU A 12 OE2 0.112 REMARK 500 10 HIS A 14 CG HIS A 14 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 1 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 2 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 3 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 4 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 5 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 6 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 7 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 7 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 8 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 9 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 9 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 10 HIS A 14 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 10 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 -124.51 -166.55 REMARK 500 1 ALA A 7 165.84 174.22 REMARK 500 1 PRO A 8 176.76 -54.85 REMARK 500 1 PRO A 10 98.64 -63.33 REMARK 500 1 PRO A 13 37.30 -87.58 REMARK 500 1 CYS A 16 -160.66 -102.36 REMARK 500 1 GLN A 17 -134.26 -168.53 REMARK 500 2 CYS A 2 -97.59 -165.58 REMARK 500 2 GLU A 4 94.39 -68.50 REMARK 500 2 PRO A 8 178.41 -56.74 REMARK 500 2 PRO A 13 31.84 -79.96 REMARK 500 2 ARG A 15 -168.15 -120.75 REMARK 500 2 GLN A 17 -135.36 -159.44 REMARK 500 3 CYS A 2 -86.87 -93.31 REMARK 500 3 PRO A 8 -160.18 -63.52 REMARK 500 3 PRO A 13 43.97 -87.51 REMARK 500 3 GLN A 17 -132.50 -178.21 REMARK 500 4 CYS A 2 -94.31 69.82 REMARK 500 4 PRO A 8 -175.91 -60.60 REMARK 500 4 PRO A 13 30.03 -82.35 REMARK 500 4 GLN A 17 -146.75 -132.83 REMARK 500 5 CYS A 2 -89.71 78.79 REMARK 500 5 ALA A 3 147.67 169.49 REMARK 500 5 PRO A 8 178.13 -57.07 REMARK 500 5 PRO A 13 31.70 -80.25 REMARK 500 5 GLN A 17 -146.23 -141.41 REMARK 500 6 CYS A 2 -98.51 50.65 REMARK 500 6 ALA A 3 158.48 169.04 REMARK 500 6 PRO A 13 39.08 -84.69 REMARK 500 6 CYS A 16 -169.43 -103.45 REMARK 500 6 GLN A 17 -125.12 -175.04 REMARK 500 7 CYS A 2 -96.92 -169.29 REMARK 500 7 GLU A 4 89.91 -69.04 REMARK 500 7 PRO A 8 176.74 -55.41 REMARK 500 7 PRO A 13 37.38 -84.81 REMARK 500 7 GLN A 17 -141.61 -82.77 REMARK 500 8 CYS A 2 -85.76 -159.79 REMARK 500 8 PRO A 8 173.99 -55.72 REMARK 500 8 PRO A 13 29.80 -77.89 REMARK 500 8 GLN A 17 -122.72 -112.40 REMARK 500 9 CYS A 2 -108.85 43.71 REMARK 500 9 ALA A 3 132.22 168.41 REMARK 500 9 GLU A 4 93.06 -55.16 REMARK 500 9 PRO A 8 -173.74 -62.89 REMARK 500 9 PRO A 13 39.63 -87.48 REMARK 500 9 CYS A 16 -157.67 -88.96 REMARK 500 9 GLN A 17 -57.97 -171.44 REMARK 500 10 CYS A 2 -94.48 52.33 REMARK 500 10 PRO A 8 -178.12 -61.64 REMARK 500 10 PRO A 13 37.06 -85.88 REMARK 500 10 GLN A 17 -52.55 -147.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TMR A 1 19 UNP P07204 TRBM_HUMAN 389 407 SEQADV 1TMR GLY A 11 UNP P07204 HIS 399 CONFLICT SEQADV 1TMR LEU A 18 UNP P07204 MET 406 CONFLICT SEQRES 1 A 19 VAL CYS ALA GLU GLY PHE ALA PRO ILE PRO GLY GLU PRO SEQRES 2 A 19 HIS ARG CYS GLN LEU PHE SSBOND 1 CYS A 2 CYS A 16 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 190 0 0 0 0 0 0 6 0 0 0 2 END