HEADER OXIDOREDUCTASE 03-AUG-98 1TMO TITLE TRIMETHYLAMINE N-OXIDE REDUCTASE FROM SHEWANELLA MASSILIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIMETHYLAMINE N-OXIDE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TMAO REDUCTASE; COMPND 5 EC: 1.6.6.9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA MASSILIA; SOURCE 3 ORGANISM_TAXID: 76854; SOURCE 4 CELLULAR_LOCATION: PERIPLASM; SOURCE 5 OTHER_DETAILS: MARINE BACTERIA, ISOLATED FROM THE FISH SOURCE 6 MULLUS SURMULETUS KEYWDS OXIDOREDUCTASE, TMAO REDUCTASE, OXOTRANSFERASE, KEYWDS 2 MOLYBDOENZYME, MO-COFACTOR, MOLYBDENUM, BIS (MOLYBDOPTERIN KEYWDS 3 GUANINE DINUCLEOTIDE) EXPDTA X-RAY DIFFRACTION AUTHOR M.CZJZEK,J.P.DOS SANTOS,G.GIORDANO,V.MEJEAN REVDAT 2 24-FEB-09 1TMO 1 VERSN REVDAT 1 30-MAR-99 1TMO 0 JRNL AUTH M.CZJZEK,J.P.DOS SANTOS,J.POMMIER,G.GIORDANO, JRNL AUTH 2 V.MEJEAN,R.HASER JRNL TITL CRYSTAL STRUCTURE OF OXIDIZED TRIMETHYLAMINE JRNL TITL 2 N-OXIDE REDUCTASE FROM SHEWANELLA MASSILIA AT 2.5 JRNL TITL 3 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 284 435 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9813128 JRNL DOI 10.1006/JMBI.1998.2156 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.P.DOS SANTOS,C.IOBBI-NIVOL,C.COUILLAULT, REMARK 1 AUTH 2 G.GIORDANO,V.MEJEAN REMARK 1 TITL MOLECULAR ANALYSIS OF THE TRIMETHYLAMINE N-OXIDE REMARK 1 TITL 2 (TMAO) REDUCTASE RESPIRATORY SYSTEM FROM A REMARK 1 TITL 3 SHEWANELLA SPECIES REMARK 1 REF J.MOL.BIOL. V. 284 421 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 29986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2992 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2564 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 284 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 3.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 2.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.34 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARDNA.PRO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPDNA.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWO REFINEMENTS WERE DONE IN REMARK 3 PARALLEL: ONE WITH TEST-SET AND ONE WITHOUT. THE FINAL, GLOBAL REMARK 3 R-FACTOR GIVEN INCLUDES ALL REFLECTIONS AND NOT ONLY THOSE OF REMARK 3 THE WORKING SET. REMARK 4 REMARK 4 1TMO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.66000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -30 REMARK 465 ASN A -29 REMARK 465 ARG A -28 REMARK 465 ARG A -27 REMARK 465 ASP A -26 REMARK 465 PHE A -25 REMARK 465 LEU A -24 REMARK 465 LYS A -23 REMARK 465 GLY A -22 REMARK 465 ILE A -21 REMARK 465 ALA A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 PHE A -16 REMARK 465 VAL A -15 REMARK 465 VAL A -14 REMARK 465 LEU A -13 REMARK 465 GLY A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 THR A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 ASN A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 LYS A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ILE A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 -71.58 -40.59 REMARK 500 SER A 126 109.39 -36.18 REMARK 500 VAL A 160 -60.52 -95.18 REMARK 500 GLU A 165 -43.60 66.06 REMARK 500 LYS A 263 34.31 -99.18 REMARK 500 LYS A 264 64.69 29.18 REMARK 500 ARG A 332 49.78 -105.10 REMARK 500 SER A 367 46.67 39.06 REMARK 500 PHE A 394 -83.11 -94.44 REMARK 500 ASP A 395 72.63 68.50 REMARK 500 TRP A 445 32.78 -83.73 REMARK 500 ASN A 446 -48.42 -144.48 REMARK 500 ASP A 450 80.30 69.79 REMARK 500 PHE A 515 -136.56 51.64 REMARK 500 PHE A 578 -68.06 -109.68 REMARK 500 ARG A 586 -71.51 -44.14 REMARK 500 ASP A 593 99.64 -163.55 REMARK 500 ASN A 597 66.47 -119.04 REMARK 500 CYS A 621 104.08 -175.59 REMARK 500 LYS A 622 -159.83 -108.93 REMARK 500 SER A 649 52.57 -113.99 REMARK 500 HIS A 657 -114.83 67.22 REMARK 500 MET A 660 -5.22 101.35 REMARK 500 SER A 663 93.29 -69.84 REMARK 500 ARG A 664 -80.06 -37.83 REMARK 500 ASN A 753 2.77 -67.28 REMARK 500 SER A 762 167.26 178.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 915 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 946 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 999 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1004 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1014 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 9.25 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1128 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 9.74 ANGSTROMS REMARK 525 HOH A1146 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A1167 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A1191 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1195 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1221 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A1222 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1233 DISTANCE = 13.04 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A1248 DISTANCE = 8.81 ANGSTROMS REMARK 525 HOH A1249 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1252 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A1261 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1294 DISTANCE = 7.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 2MO A 801 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 149 OG REMARK 620 2 2MD A 800 S13 128.5 REMARK 620 3 2MD A 799 S13 70.2 74.4 REMARK 620 4 2MD A 799 S12 121.7 72.4 65.8 REMARK 620 5 2MD A 800 S12 69.5 61.2 62.3 116.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MOS REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MOLYBDENUM COFACTOR BINDING THE MOLYBDENUM REMARK 800 ION, ALSO LIGATED BY TWO OXO GROUPS AND OG FROM SER 149. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MD A 799 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MD A 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MO A 801 DBREF 1TMO A -30 798 UNP O87948 TORA_SHEMA 1 829 SEQRES 1 A 829 MET ASN ARG ARG ASP PHE LEU LYS GLY ILE ALA SER SER SEQRES 2 A 829 SER PHE VAL VAL LEU GLY GLY SER SER VAL LEU THR PRO SEQRES 3 A 829 LEU ASN ALA LEU ALA LYS ALA GLY ILE ASN GLU ASP GLU SEQRES 4 A 829 TRP LEU THR THR GLY SER HIS PHE GLY ALA PHE LYS MET SEQRES 5 A 829 LYS ARG LYS ASN GLY VAL ILE ALA GLU VAL LYS PRO PHE SEQRES 6 A 829 ASP LEU ASP LYS TYR PRO THR ASP MET ILE ASN GLY ILE SEQRES 7 A 829 ARG GLY MET VAL TYR ASN PRO SER ARG VAL ARG TYR PRO SEQRES 8 A 829 MET VAL ARG LEU ASP PHE LEU LEU LYS GLY HIS LYS SER SEQRES 9 A 829 ASN THR HIS GLN ARG GLY ASP PHE ARG PHE VAL ARG VAL SEQRES 10 A 829 THR TRP ASP LYS ALA LEU THR LEU PHE LYS HIS SER LEU SEQRES 11 A 829 ASP GLU VAL GLN THR GLN TYR GLY PRO SER GLY LEU HIS SEQRES 12 A 829 ALA GLY GLN THR GLY TRP ARG ALA THR GLY GLN LEU HIS SEQRES 13 A 829 SER SER THR SER HIS MET GLN ARG ALA VAL GLY MET HIS SEQRES 14 A 829 GLY ASN TYR VAL LYS LYS ILE GLY ASP TYR SER THR GLY SEQRES 15 A 829 ALA GLY GLN THR ILE LEU PRO TYR VAL LEU GLY SER THR SEQRES 16 A 829 GLU VAL TYR ALA GLN GLY THR SER TRP PRO LEU ILE LEU SEQRES 17 A 829 GLU HIS SER ASP THR ILE VAL LEU TRP SER ASN ASP PRO SEQRES 18 A 829 TYR LYS ASN LEU GLN VAL GLY TRP ASN ALA GLU THR HIS SEQRES 19 A 829 GLU SER PHE ALA TYR LEU ALA GLN LEU LYS GLU LYS VAL SEQRES 20 A 829 LYS GLN GLY LYS ILE ARG VAL ILE SER ILE ASP PRO VAL SEQRES 21 A 829 VAL THR LYS THR GLN ALA TYR LEU GLY CYS GLU GLN LEU SEQRES 22 A 829 TYR VAL ASN PRO GLN THR ASP VAL THR LEU MET LEU ALA SEQRES 23 A 829 ILE ALA HIS GLU MET ILE SER LYS LYS LEU TYR ASP ASP SEQRES 24 A 829 LYS PHE ILE GLN GLY TYR SER LEU GLY PHE GLU GLU PHE SEQRES 25 A 829 VAL PRO TYR VAL MET GLY THR LYS ASP GLY VAL ALA LYS SEQRES 26 A 829 THR PRO GLU TRP ALA ALA PRO ILE CYS GLY VAL GLU ALA SEQRES 27 A 829 HIS VAL ILE ARG ASP LEU ALA LYS THR LEU VAL LYS GLY SEQRES 28 A 829 ARG THR GLN PHE MET MET GLY TRP CYS ILE GLN ARG GLN SEQRES 29 A 829 GLN HIS GLY GLU GLN PRO TYR TRP MET ALA ALA VAL LEU SEQRES 30 A 829 ALA THR MET ILE GLY GLN ILE GLY LEU PRO GLY GLY GLY SEQRES 31 A 829 ILE SER TYR GLY HIS HIS TYR SER SER ILE GLY VAL PRO SEQRES 32 A 829 SER SER GLY ALA ALA ALA PRO GLY ALA PHE PRO ARG ASN SEQRES 33 A 829 LEU ASP GLU ASN GLN LYS PRO LEU PHE ASP SER SER ASP SEQRES 34 A 829 PHE LYS GLY ALA SER SER THR ILE PRO VAL ALA ARG TRP SEQRES 35 A 829 ILE ASP ALA ILE LEU GLU PRO GLY LYS THR ILE ASP ALA SEQRES 36 A 829 ASN GLY SER LYS VAL VAL TYR PRO ASP ILE LYS MET MET SEQRES 37 A 829 ILE PHE SER GLY ASN ASN PRO TRP ASN HIS HIS GLN ASP SEQRES 38 A 829 ARG ASN ARG MET LYS GLN ALA PHE HIS LYS LEU GLU CYS SEQRES 39 A 829 VAL VAL THR VAL ASP VAL ASN TRP THR ALA THR CYS ARG SEQRES 40 A 829 PHE SER ASP ILE VAL LEU PRO ALA CYS THR THR TYR GLU SEQRES 41 A 829 ARG ASN ASP ILE ASP VAL TYR GLY ALA TYR ALA ASN ARG SEQRES 42 A 829 GLY ILE LEU ALA MET GLN LYS MET VAL GLU PRO LEU PHE SEQRES 43 A 829 ASP SER LEU SER ASP PHE GLU ILE PHE THR ARG PHE ALA SEQRES 44 A 829 ALA VAL LEU GLY LYS GLU LYS GLU TYR THR ARG ASN MET SEQRES 45 A 829 GLY GLU MET GLU TRP LEU GLU THR LEU TYR ASN GLU CYS SEQRES 46 A 829 LYS ALA ALA ASN ALA GLY LYS PHE GLU MET PRO ASP PHE SEQRES 47 A 829 ALA THR PHE TRP LYS GLN GLY TYR VAL HIS PHE GLY ASP SEQRES 48 A 829 GLY GLU VAL TRP THR ARG HIS ALA ASP PHE ARG ASN ASP SEQRES 49 A 829 PRO GLU ILE ASN PRO LEU GLY THR PRO SER GLY LEU ILE SEQRES 50 A 829 GLU ILE PHE SER ARG LYS ILE ASP GLN PHE GLY TYR ASP SEQRES 51 A 829 ASP CYS LYS GLY HIS PRO THR TRP MET GLU LYS THR GLU SEQRES 52 A 829 ARG SER HIS GLY GLY PRO GLY SER ASP LYS HIS PRO ILE SEQRES 53 A 829 TRP LEU GLN SER CYS HIS PRO ASP LYS ARG LEU HIS SER SEQRES 54 A 829 GLN MET CYS GLU SER ARG GLU TYR ARG GLU THR TYR ALA SEQRES 55 A 829 VAL ASN GLY ARG GLU PRO VAL TYR ILE SER PRO VAL ASP SEQRES 56 A 829 ALA LYS ALA ARG GLY ILE LYS ASP GLY ASP ILE VAL ARG SEQRES 57 A 829 VAL PHE ASN ASP ARG GLY GLN LEU LEU ALA GLY ALA VAL SEQRES 58 A 829 VAL SER ASP ASN PHE PRO LYS GLY ILE VAL ARG ILE HIS SEQRES 59 A 829 GLU GLY ALA TRP TYR GLY PRO VAL GLY LYS ASP GLY SER SEQRES 60 A 829 THR GLU GLY GLY ALA GLU VAL GLY ALA LEU CYS SER TYR SEQRES 61 A 829 GLY ASP PRO ASN THR LEU THR LEU ASP ILE GLY THR SER SEQRES 62 A 829 LYS LEU ALA GLN ALA CYS SER ALA TYR THR CYS LEU VAL SEQRES 63 A 829 GLU PHE GLU LYS TYR GLN GLY LYS VAL PRO LYS VAL SER SEQRES 64 A 829 SER PHE ASP GLY PRO ILE GLU VAL GLU ILE HET 2MD A 799 47 HET 2MD A 800 47 HET 2MO A 801 3 HETNAM 2MD GUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6- HETNAM 2 2MD DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8- HETNAM 3 2MD OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER HETNAM 2MO MOLYBDENUM (IV)OXIDE HETSYN 2MD MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE HETSYN 2 2MD DINUCLEOTIDE) FORMUL 2 2MD 2(C20 H28 N10 O13 P2 S2) FORMUL 4 2MO MO O2 FORMUL 5 HOH *505(H2 O) HELIX 1 1 ASP A 42 ASN A 45 5 4 HELIX 2 2 ILE A 47 VAL A 51 1 5 HELIX 3 3 LEU A 64 LYS A 72 1 9 HELIX 4 4 THR A 75 GLN A 77 5 3 HELIX 5 5 TRP A 88 GLN A 105 1 18 HELIX 6 6 PRO A 108 GLY A 110 5 3 HELIX 7 7 SER A 127 GLY A 136 1 10 HELIX 8 8 GLY A 153 VAL A 160 1 8 HELIX 9 9 TRP A 173 HIS A 179 1 7 HELIX 10 10 PRO A 190 ASN A 193 1 4 HELIX 11 11 GLU A 204 GLN A 218 5 15 HELIX 12 12 LYS A 232 LEU A 237 1 6 HELIX 13 13 ASP A 249 SER A 262 1 14 HELIX 14 14 ASP A 268 TYR A 274 1 7 HELIX 15 15 PHE A 278 MET A 286 1 9 HELIX 16 16 PRO A 296 CYS A 303 1 8 HELIX 17 17 ALA A 307 LYS A 319 1 13 HELIX 18 18 CYS A 329 GLN A 331 5 3 HELIX 19 19 GLU A 337 ILE A 350 1 14 HELIX 20 20 VAL A 408 LEU A 416 5 9 HELIX 21 21 PRO A 444 HIS A 447 1 4 HELIX 22 22 ARG A 451 LYS A 460 1 10 HELIX 23 23 ALA A 473 PHE A 477 1 5 HELIX 24 24 THR A 487 GLU A 489 5 3 HELIX 25 25 ASP A 520 VAL A 530 1 11 HELIX 26 26 GLU A 534 THR A 538 1 5 HELIX 27 27 GLU A 543 GLY A 560 1 18 HELIX 28 28 PHE A 567 GLN A 573 1 7 HELIX 29 29 ALA A 588 ASN A 592 1 5 HELIX 30 30 ARG A 611 PHE A 616 1 6 HELIX 31 31 ARG A 664 THR A 669 1 6 HELIX 32 32 PRO A 682 ARG A 688 1 7 HELIX 33 33 GLU A 738 ALA A 741 5 4 HELIX 34 34 PRO A 752 THR A 754 5 3 SHEET 1 A 3 LEU A 10 SER A 14 0 SHEET 2 A 3 GLY A 17 LYS A 24 -1 N MET A 21 O LEU A 10 SHEET 3 A 3 VAL A 27 PRO A 33 -1 N LYS A 32 O LYS A 20 SHEET 1 B 2 MET A 61 ARG A 63 0 SHEET 2 B 2 PHE A 83 ARG A 85 -1 N VAL A 84 O VAL A 62 SHEET 1 C 2 LYS A 143 ILE A 145 0 SHEET 2 C 2 THR A 405 PRO A 407 1 N ILE A 406 O LYS A 143 SHEET 1 D 5 GLY A 359 SER A 361 0 SHEET 2 D 5 THR A 322 MET A 326 1 N PHE A 324 O GLY A 359 SHEET 3 D 5 THR A 182 TRP A 186 1 N THR A 182 O GLN A 323 SHEET 4 D 5 ARG A 222 ILE A 226 1 N ARG A 222 O ILE A 183 SHEET 5 D 5 GLU A 240 LEU A 242 1 N GLU A 240 O SER A 225 SHEET 1 E 2 THR A 421 ASP A 423 0 SHEET 2 E 2 LYS A 428 VAL A 430 -1 N VAL A 429 O ILE A 422 SHEET 1 F 3 MET A 436 SER A 440 0 SHEET 2 F 3 CYS A 463 ASP A 468 1 N CYS A 463 O MET A 437 SHEET 3 F 3 ILE A 480 PRO A 483 1 N ILE A 480 O THR A 466 SHEET 1 G 3 ASP A 492 TYR A 496 0 SHEET 2 G 3 GLY A 503 MET A 507 -1 N MET A 507 O ASP A 492 SHEET 3 G 3 TYR A 575 HIS A 577 -1 N VAL A 576 O ILE A 504 SHEET 1 H 2 TRP A 646 GLN A 648 0 SHEET 2 H 2 ILE A 719 ARG A 721 1 N VAL A 720 O TRP A 646 SHEET 1 I 4 PRO A 677 ILE A 680 0 SHEET 2 I 4 GLY A 703 VAL A 711 1 N GLY A 708 O VAL A 678 SHEET 3 I 4 ILE A 695 ASN A 700 -1 N ASN A 700 O GLY A 703 SHEET 4 I 4 GLU A 776 LYS A 779 -1 N GLU A 778 O ARG A 697 LINK MO 2MO A 801 OG SER A 149 1555 1555 1.73 LINK MO 2MO A 801 S13 2MD A 800 1555 1555 2.70 LINK MO 2MO A 801 S13 2MD A 799 1555 1555 2.54 LINK MO 2MO A 801 S12 2MD A 799 1555 1555 2.59 LINK S12 2MD A 800 MO 2MO A 801 1555 1555 2.80 SITE 1 MOS 4 2MD A 799 2MD A 800 2MO A 801 SER A 149 SITE 1 AC1 29 GLY A 117 TRP A 118 ALA A 120 SER A 127 SITE 2 AC1 29 SER A 149 ARG A 332 GLY A 441 ASN A 442 SITE 3 AC1 29 ASN A 443 ASN A 446 HIS A 447 VAL A 467 SITE 4 AC1 29 ASP A 468 THR A 472 ALA A 484 ARG A 490 SITE 5 AC1 29 ASP A 520 SER A 649 HIS A 651 LEU A 656 SITE 6 AC1 29 HIS A 657 SER A 658 GLN A 659 ASN A 753 SITE 7 AC1 29 TYR A 771 2MD A 800 2MO A 801 HOH A 869 SITE 8 AC1 29 HOH A 870 SITE 1 AC2 24 SER A 149 SER A 187 LYS A 192 ASN A 193 SITE 2 AC2 24 VAL A 196 ILE A 226 ASP A 227 THR A 231 SITE 3 AC2 24 GLN A 247 ASP A 249 TRP A 328 CYS A 329 SITE 4 AC2 24 ARG A 332 GLN A 333 TRP A 646 GLN A 648 SITE 5 AC2 24 CYS A 650 HIS A 651 PRO A 652 ARG A 655 SITE 6 AC2 24 HIS A 657 2MD A 799 2MO A 801 HOH A 902 SITE 1 AC3 4 TRP A 118 SER A 149 2MD A 799 2MD A 800 CRYST1 123.320 140.700 59.390 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016838 0.00000 MASTER 376 0 3 34 26 0 16 6 0 0 0 64 END