HEADER GLYCOPROTEIN 26-JAN-96 1TLE TITLE LE (LAMININ-TYPE EGF-LIKE) MODULE GIII4 IN SOLUTION AT PH TITLE 2 3.5 AND 290 K, NMR, 14 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NIDOGEN BINDING LE MODULE OF THE LAMININ GAMMA1 COMPND 5 CHAIN, MODULE GIII4; COMPND 6 SYNONYM: LAMININ-TYPE EGF-LIKE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: BASEMENT MEMBRANE; SOURCE 6 GENE: LAMC1; SOURCE 7 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCEP4; SOURCE 11 EXPRESSION_SYSTEM_GENE: LAMC1 KEYWDS GLYCOPROTEIN, EXTRACELLULAR MATRIX PROTEIN, NIDOGEN BINDING, KEYWDS 2 LE-MODULE EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR R.BAUMGARTNER,M.CZISCH,U.MAYER,E.P.SCHL,R.HUBER,R.TIMPL, AUTHOR 2 T.A.HOLAK REVDAT 2 24-FEB-09 1TLE 1 VERSN REVDAT 1 12-FEB-97 1TLE 0 JRNL AUTH R.BAUMGARTNER,M.CZISCH,U.MAYER,E.POSCHL,R.HUBER, JRNL AUTH 2 R.TIMPL,T.A.HOLAK JRNL TITL STRUCTURE OF THE NIDOGEN BINDING LE MODULE OF THE JRNL TITL 2 LAMININ GAMMA1 CHAIN IN SOLUTION. JRNL REF J.MOL.BIOL. V. 257 658 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8648631 JRNL DOI 10.1006/JMBI.1996.0192 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.POSCHL,J.W.FOX,D.BLOCK,U.MAYER,R.TIMPL REMARK 1 TITL TWO NON-CONTIGUOUS REGIONS CONTRIBUTE TO NIDOGEN REMARK 1 TITL 2 BINDING TO A SINGLE EGF-LIKE MOTIF OF THE LAMININ REMARK 1 TITL 3 GAMMA 1 CHAIN REMARK 1 REF EMBO J. V. 13 3741 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH U.MAYER,R.NISCHT,E.POSCHL,K.MANN,K.FUKUDA,M.GERL, REMARK 1 AUTH 2 Y.YAMADA,R.TIMPL REMARK 1 TITL A SINGLE EGF-LIKE MOTIF OF LAMININ IS RESPONSIBLE REMARK 1 TITL 2 FOR HIGH AFFINITY NIDOGEN BINDING REMARK 1 REF EMBO J. V. 12 1879 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TLE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 5 157.19 178.90 REMARK 500 1 ASN A 6 170.41 -54.09 REMARK 500 1 TYR A 29 77.73 -64.58 REMARK 500 1 ASN A 30 48.87 26.00 REMARK 500 1 CYS A 36 27.23 49.74 REMARK 500 1 LYS A 55 -130.69 -71.85 REMARK 500 2 PRO A 2 -90.87 -78.23 REMARK 500 2 GLN A 4 89.28 -55.97 REMARK 500 2 ASP A 7 -74.72 81.88 REMARK 500 2 ALA A 13 -171.88 -54.36 REMARK 500 2 ASN A 16 16.43 52.22 REMARK 500 2 LYS A 26 67.21 -154.02 REMARK 500 2 ILE A 28 -62.87 -104.13 REMARK 500 2 TYR A 29 73.07 -69.70 REMARK 500 2 ASN A 30 59.13 27.48 REMARK 500 2 ALA A 32 -168.70 -119.43 REMARK 500 2 LYS A 55 -105.97 -59.27 REMARK 500 2 LYS A 57 153.19 163.63 REMARK 500 3 CYS A 3 -178.06 61.78 REMARK 500 3 GLN A 4 127.92 179.76 REMARK 500 3 ASN A 6 -165.35 -164.59 REMARK 500 3 ASP A 7 -84.07 66.40 REMARK 500 3 ASN A 8 63.45 -115.73 REMARK 500 3 ASN A 16 28.43 38.85 REMARK 500 3 ASN A 30 63.79 33.63 REMARK 500 3 LYS A 55 -105.61 -59.30 REMARK 500 3 LYS A 57 172.19 170.36 REMARK 500 4 PRO A 2 -94.79 -75.41 REMARK 500 4 CYS A 3 -91.89 35.46 REMARK 500 4 CYS A 5 -143.87 -110.59 REMARK 500 4 ASN A 6 -176.22 -52.09 REMARK 500 4 ASN A 16 -29.29 -38.22 REMARK 500 4 LYS A 26 70.81 -165.04 REMARK 500 4 ILE A 28 -63.13 -105.47 REMARK 500 4 TYR A 29 82.86 -57.17 REMARK 500 4 ASN A 30 49.91 21.20 REMARK 500 4 ALA A 32 -162.47 -125.01 REMARK 500 4 LYS A 55 -139.70 -63.41 REMARK 500 5 GLN A 4 140.12 -172.03 REMARK 500 5 ASP A 7 -134.92 -152.59 REMARK 500 5 ALA A 13 -165.80 -78.83 REMARK 500 5 ASN A 16 25.51 45.12 REMARK 500 5 CYS A 24 107.77 -58.25 REMARK 500 5 ILE A 28 -62.05 -108.82 REMARK 500 5 ASN A 30 62.07 38.47 REMARK 500 5 ALA A 32 -164.99 -122.98 REMARK 500 5 LYS A 55 -129.75 -77.57 REMARK 500 6 CYS A 5 -135.47 -69.35 REMARK 500 6 ASN A 6 -174.02 -56.96 REMARK 500 6 ASN A 12 -72.15 -78.57 REMARK 500 6 GLU A 23 -40.90 177.62 REMARK 500 6 LYS A 26 77.48 -156.82 REMARK 500 6 ILE A 28 -63.84 -96.97 REMARK 500 6 TYR A 29 81.52 -57.85 REMARK 500 6 ASN A 30 50.82 20.62 REMARK 500 6 LYS A 55 -137.34 -67.58 REMARK 500 6 LYS A 57 -156.46 -115.95 REMARK 500 7 ASN A 6 -154.78 -144.58 REMARK 500 7 ASP A 7 -134.96 82.51 REMARK 500 7 ALA A 13 -169.56 -54.56 REMARK 500 7 VAL A 14 79.37 -103.76 REMARK 500 7 ILE A 28 -61.82 -103.54 REMARK 500 7 ASN A 30 60.84 39.06 REMARK 500 7 ALA A 32 -165.79 -112.66 REMARK 500 7 LYS A 55 -143.49 -83.38 REMARK 500 8 CYS A 3 91.94 -64.01 REMARK 500 8 ASN A 6 -97.88 -35.88 REMARK 500 8 ASP A 7 -94.45 42.27 REMARK 500 8 ASN A 12 -70.77 -78.26 REMARK 500 8 LYS A 26 68.72 -153.89 REMARK 500 8 TYR A 29 47.59 -77.86 REMARK 500 8 ALA A 32 -163.80 -116.35 REMARK 500 8 LYS A 55 -110.26 -69.72 REMARK 500 9 PRO A 2 -157.23 -77.69 REMARK 500 9 CYS A 3 148.55 -36.36 REMARK 500 9 GLN A 4 118.19 -177.97 REMARK 500 9 ASP A 7 -140.23 -170.93 REMARK 500 9 ASN A 12 -71.48 -79.84 REMARK 500 9 ALA A 13 176.55 -56.09 REMARK 500 9 ILE A 28 -66.84 -106.66 REMARK 500 9 TYR A 29 75.97 -68.87 REMARK 500 9 ASN A 30 52.24 29.42 REMARK 500 9 ALA A 32 -153.84 -119.88 REMARK 500 9 LYS A 55 -145.25 -73.01 REMARK 500 9 LYS A 57 -167.03 -101.33 REMARK 500 10 PRO A 2 -168.06 -78.66 REMARK 500 10 GLN A 4 -96.74 -39.32 REMARK 500 10 ASN A 6 -144.20 -106.04 REMARK 500 10 ASP A 7 -72.37 83.21 REMARK 500 10 ASN A 12 -74.20 -79.00 REMARK 500 10 LYS A 26 95.63 -160.16 REMARK 500 10 TYR A 29 40.10 -75.12 REMARK 500 10 ALA A 32 -159.02 -110.30 REMARK 500 10 LYS A 55 -146.89 -65.96 REMARK 500 11 GLN A 4 116.08 -162.86 REMARK 500 11 ALA A 13 -168.55 -63.32 REMARK 500 11 ASN A 16 15.51 54.88 REMARK 500 11 THR A 21 -64.16 -91.94 REMARK 500 11 LYS A 26 63.10 -160.20 REMARK 500 11 TYR A 29 80.27 -59.50 REMARK 500 11 ASN A 30 52.65 24.32 REMARK 500 11 ALA A 32 -169.82 -115.56 REMARK 500 11 LYS A 55 -145.07 -89.84 REMARK 500 12 GLN A 4 -115.73 179.85 REMARK 500 12 CYS A 5 88.20 -0.15 REMARK 500 12 ASN A 6 -135.84 -78.03 REMARK 500 12 ASP A 7 -79.71 74.27 REMARK 500 12 ASN A 8 74.07 -115.62 REMARK 500 12 ASN A 12 -72.24 -79.32 REMARK 500 12 ILE A 28 -64.85 -92.13 REMARK 500 12 ASN A 30 54.22 31.34 REMARK 500 12 ALA A 32 -163.10 -123.49 REMARK 500 12 LYS A 55 -116.80 -97.57 REMARK 500 13 PRO A 2 -76.08 -78.37 REMARK 500 13 ASN A 6 147.70 -39.92 REMARK 500 13 ASN A 12 -74.10 -78.63 REMARK 500 13 ALA A 13 -167.83 -59.28 REMARK 500 13 ILE A 28 -64.02 -107.13 REMARK 500 13 TYR A 29 81.28 -59.21 REMARK 500 13 ASN A 30 50.99 22.99 REMARK 500 13 CYS A 36 61.26 61.17 REMARK 500 13 PHE A 44 -156.85 -108.45 REMARK 500 13 LYS A 55 -139.66 -87.21 REMARK 500 13 LYS A 57 -167.89 174.39 REMARK 500 14 PRO A 2 -94.31 -75.60 REMARK 500 14 CYS A 3 -87.28 48.47 REMARK 500 14 GLN A 4 130.63 -37.81 REMARK 500 14 ASN A 6 -167.87 -54.63 REMARK 500 14 ASP A 7 -102.35 102.89 REMARK 500 14 LYS A 26 77.89 -159.07 REMARK 500 14 TYR A 29 72.53 -68.15 REMARK 500 14 ASN A 30 52.67 33.09 REMARK 500 14 LYS A 55 -155.47 -70.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.32 SIDE_CHAIN REMARK 500 1 ARG A 19 0.28 SIDE_CHAIN REMARK 500 1 ARG A 38 0.19 SIDE_CHAIN REMARK 500 2 ARG A 1 0.15 SIDE_CHAIN REMARK 500 2 ARG A 19 0.21 SIDE_CHAIN REMARK 500 2 ARG A 38 0.32 SIDE_CHAIN REMARK 500 3 ARG A 1 0.15 SIDE_CHAIN REMARK 500 3 ARG A 19 0.25 SIDE_CHAIN REMARK 500 3 ARG A 38 0.27 SIDE_CHAIN REMARK 500 4 ARG A 1 0.25 SIDE_CHAIN REMARK 500 4 ARG A 19 0.17 SIDE_CHAIN REMARK 500 4 ARG A 38 0.09 SIDE_CHAIN REMARK 500 5 ARG A 1 0.29 SIDE_CHAIN REMARK 500 5 ARG A 19 0.14 SIDE_CHAIN REMARK 500 5 ARG A 38 0.23 SIDE_CHAIN REMARK 500 6 ARG A 1 0.30 SIDE_CHAIN REMARK 500 6 ARG A 19 0.29 SIDE_CHAIN REMARK 500 6 ARG A 38 0.14 SIDE_CHAIN REMARK 500 7 ARG A 19 0.21 SIDE_CHAIN REMARK 500 7 ARG A 38 0.32 SIDE_CHAIN REMARK 500 8 ARG A 1 0.21 SIDE_CHAIN REMARK 500 8 ARG A 19 0.17 SIDE_CHAIN REMARK 500 8 ARG A 38 0.30 SIDE_CHAIN REMARK 500 9 ARG A 1 0.14 SIDE_CHAIN REMARK 500 9 ARG A 19 0.29 SIDE_CHAIN REMARK 500 9 ARG A 38 0.23 SIDE_CHAIN REMARK 500 10 ARG A 1 0.30 SIDE_CHAIN REMARK 500 10 ARG A 19 0.31 SIDE_CHAIN REMARK 500 10 ARG A 38 0.28 SIDE_CHAIN REMARK 500 11 ARG A 1 0.32 SIDE_CHAIN REMARK 500 11 ARG A 19 0.30 SIDE_CHAIN REMARK 500 11 ARG A 38 0.26 SIDE_CHAIN REMARK 500 12 ARG A 1 0.14 SIDE_CHAIN REMARK 500 12 ARG A 19 0.17 SIDE_CHAIN REMARK 500 12 ARG A 38 0.29 SIDE_CHAIN REMARK 500 13 ARG A 1 0.27 SIDE_CHAIN REMARK 500 13 ARG A 19 0.31 SIDE_CHAIN REMARK 500 13 ARG A 38 0.11 SIDE_CHAIN REMARK 500 14 ARG A 1 0.29 SIDE_CHAIN REMARK 500 14 ARG A 19 0.11 SIDE_CHAIN REMARK 500 14 ARG A 38 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: BIN REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BINDING SITE TO NIDOGEN. DBREF 1TLE A 1 58 UNP P02468 LAMC1_MOUSE 824 881 SEQRES 1 A 58 ARG PRO CYS GLN CYS ASN ASP ASN ILE ASP PRO ASN ALA SEQRES 2 A 58 VAL GLY ASN CYS ASN ARG LEU THR GLY GLU CYS LEU LYS SEQRES 3 A 58 CYS ILE TYR ASN THR ALA GLY PHE TYR CYS ASP ARG CYS SEQRES 4 A 58 LYS GLU GLY PHE PHE GLY ASN PRO LEU ALA PRO ASN PRO SEQRES 5 A 58 ALA ASP LYS CYS LYS ALA HELIX 1 1 PRO A 52 ASP A 54 5 3 SHEET 1 A 2 THR A 31 ALA A 32 0 SHEET 2 A 2 ARG A 38 CYS A 39 -1 N ARG A 38 O ALA A 32 SHEET 1 B 2 PHE A 44 GLY A 45 0 SHEET 2 B 2 CYS A 56 LYS A 57 -1 O LYS A 57 N PHE A 44 SSBOND 1 CYS A 3 CYS A 17 1555 1555 2.02 SSBOND 2 CYS A 5 CYS A 24 1555 1555 2.02 SSBOND 3 CYS A 27 CYS A 36 1555 1555 2.02 SSBOND 4 CYS A 39 CYS A 56 1555 1555 2.02 SITE 1 BIN 7 ASN A 8 ILE A 9 ASP A 10 PRO A 11 SITE 2 BIN 7 ASN A 12 ALA A 13 VAL A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 269 0 0 1 4 0 2 6 0 0 0 5 END