HEADER PLANT PROTEIN 02-JUN-04 1TI5 TITLE SOLUTION STRUCTURE OF PLANT DEFENSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLANT DEFENSIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIGNA RADIATA; SOURCE 3 ORGANISM_TAXID: 157791; SOURCE 4 OTHER_DETAILS: SEED KEYWDS DEFENSIN, INSECTICIDAL ACTIVITY, MUNG BEAN, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.J.LIU,C.S.CHENG,Y.N.LIU,M.P.HSU,C.S.CHEN,P.C.LYU REVDAT 3 24-FEB-09 1TI5 1 VERSN REVDAT 2 27-NOV-07 1TI5 1 JRNL REVDAT 1 26-JUL-05 1TI5 0 JRNL AUTH Y.J.LIU,C.S.CHENG,S.M.LAI,M.P.HSU,C.S.CHEN,P.C.LYU JRNL TITL SOLUTION STRUCTURE OF THE PLANT DEFENSIN VRD1 FROM JRNL TITL 2 MUNG BEAN AND ITS POSSIBLE ROLE IN INSECTICIDAL JRNL TITL 3 ACTIVITY AGAINST BRUCHIDS. JRNL REF PROTEINS V. 63 777 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16544327 JRNL DOI 10.1002/PROT.20962 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB022657. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM VRCRP; 50MM PHOSPHATE REMARK 210 BUFFER NA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, SPARKY 3.106, X- REMARK 210 PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 55.69 -94.77 REMARK 500 1 LYS A 12 164.46 -41.09 REMARK 500 1 ILE A 15 -145.30 -117.19 REMARK 500 2 LYS A 7 55.45 -98.27 REMARK 500 2 LYS A 12 163.62 -40.93 REMARK 500 2 ILE A 15 -143.56 -109.93 REMARK 500 2 ARG A 38 56.63 39.05 REMARK 500 3 LYS A 7 55.24 -93.83 REMARK 500 3 LYS A 12 154.89 -38.61 REMARK 500 3 ILE A 15 -155.73 -115.15 REMARK 500 4 LYS A 7 55.68 -98.10 REMARK 500 4 LYS A 12 155.63 -41.29 REMARK 500 4 ILE A 15 -150.80 -117.37 REMARK 500 5 LYS A 7 54.81 -100.69 REMARK 500 5 LYS A 12 160.65 -39.28 REMARK 500 5 ILE A 15 -148.41 -116.77 REMARK 500 6 LYS A 7 56.00 -95.37 REMARK 500 6 LYS A 12 165.30 -41.30 REMARK 500 6 ILE A 15 -147.92 -119.52 REMARK 500 7 LYS A 7 56.47 -92.05 REMARK 500 7 LYS A 12 157.35 -44.84 REMARK 500 7 ILE A 15 -148.33 -107.20 REMARK 500 8 LYS A 7 54.69 -94.30 REMARK 500 8 LYS A 12 151.45 -34.23 REMARK 500 9 LYS A 7 55.70 -95.11 REMARK 500 9 LYS A 12 163.77 -40.59 REMARK 500 9 ILE A 15 -147.23 -120.87 REMARK 500 10 LYS A 7 55.73 -97.51 REMARK 500 10 LYS A 12 162.51 -43.70 REMARK 500 10 ILE A 15 -146.57 -109.18 REMARK 500 10 LYS A 34 -133.38 -154.66 REMARK 500 10 THR A 37 -26.66 163.77 REMARK 500 10 ARG A 38 62.96 -153.52 REMARK 500 10 THR A 39 -159.48 -112.33 REMARK 500 11 LYS A 7 56.37 -91.13 REMARK 500 11 LYS A 12 163.71 -40.70 REMARK 500 11 ILE A 15 -145.65 -119.86 REMARK 500 11 THR A 37 17.99 -145.77 REMARK 500 11 ARG A 38 58.91 35.49 REMARK 500 12 LYS A 7 54.82 -99.89 REMARK 500 12 LYS A 12 161.50 -38.73 REMARK 500 12 ILE A 15 -143.66 -116.26 REMARK 500 13 LYS A 7 55.22 -95.66 REMARK 500 13 LYS A 12 168.10 -42.32 REMARK 500 13 ILE A 15 -145.63 -104.24 REMARK 500 14 LYS A 7 55.58 -96.40 REMARK 500 14 LYS A 12 162.75 -40.22 REMARK 500 14 ILE A 15 -141.65 -120.63 REMARK 500 14 THR A 37 59.17 -163.97 REMARK 500 15 LYS A 7 55.40 -94.74 REMARK 500 15 LYS A 12 161.69 -39.02 REMARK 500 15 ILE A 15 -157.79 -116.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TI5 A 1 46 UNP Q6T418 Q6T418_9FABA 28 73 SEQRES 1 A 46 ARG THR CYS MET ILE LYS LYS GLU GLY TRP GLY LYS CYS SEQRES 2 A 46 LEU ILE ASP THR THR CYS ALA HIS SER CYS LYS ASN ARG SEQRES 3 A 46 GLY TYR ILE GLY GLY ASN CYS LYS GLY MET THR ARG THR SEQRES 4 A 46 CYS TYR CYS LEU VAL ASN CYS HELIX 1 1 GLU A 8 GLY A 11 5 4 HELIX 2 2 ASP A 16 TYR A 28 1 13 SHEET 1 A 3 CYS A 3 LYS A 6 0 SHEET 2 A 3 THR A 39 VAL A 44 -1 O VAL A 44 N CYS A 3 SHEET 3 A 3 GLY A 30 LYS A 34 -1 N ASN A 32 O TYR A 41 SSBOND 1 CYS A 3 CYS A 46 1555 1555 2.02 SSBOND 2 CYS A 13 CYS A 33 1555 1555 2.02 SSBOND 3 CYS A 19 CYS A 40 1555 1555 2.02 SSBOND 4 CYS A 23 CYS A 42 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 119 0 0 2 3 0 0 6 0 0 0 4 END