HEADER TRANSCRIPTION 26-MAY-04 1TF1 TITLE CRYSTAL STRUCTURE OF THE E. COLI GLYOXYLATE REGULATORY PROTEIN LIGAND TITLE 2 BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE UTILIZATION COMPND 3 OPERONS; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 6 SYNONYM: TRANSCRIPTIONAL REGULATOR ALLR, APC5051; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLXA3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MIDWEST CENTER FOR STRUCTURAL GENOMICS, GLCR, LIGAND BINDING DOMAIN, KEYWDS 2 TRANSCRIPTIONAL REGULATOR, PSI, PROTEIN STRUCTURE INITIATIVE, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,T.SKARINA,M.KUDRYTSKA,A.JOACHIMIAK,C.ARROWSMITH,A.EDWARDS, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 31-JAN-18 1TF1 1 REMARK REVDAT 4 24-FEB-09 1TF1 1 VERSN REVDAT 3 18-JAN-05 1TF1 1 AUTHOR KEYWDS REMARK REVDAT 2 31-AUG-04 1TF1 1 SOURCE REVDAT 1 03-AUG-04 1TF1 0 JRNL AUTH J.R.WALKER,S.ALTAMENTOVA,A.EZERSKY,G.LORCA,T.SKARINA, JRNL AUTH 2 M.KUDRITSKA,L.J.BALL,A.BOCHKAREV,A.SAVCHENKO JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDY OF EFFECTOR MOLECULE JRNL TITL 2 RECOGNITION BY THE E.COLI GLYOXYLATE AND ALLANTOIN JRNL TITL 3 UTILIZATION REGULATORY PROTEIN ALLR. JRNL REF J.MOL.BIOL. V. 358 810 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16546208 JRNL DOI 10.1016/J.JMB.2006.02.034 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.G.ZHANG,Y.KIM,T.SKARINA,S.BEASLEY,R.LASKOWSKI, REMARK 1 AUTH 2 C.ARROWSMITH,A.EDWARDS,A.JOACHIMIAK,A.SAVCHENKO REMARK 1 TITL CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 0065, A MEMBER OF REMARK 1 TITL 2 THE ICLR TRANSCRIPTIONAL FACTOR FAMILY REMARK 1 REF J.BIOL.CHEM. V. 277 19183 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.M112171200 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.WALKER,L.EVDOKIMOVA,R.G.ZHANG,A.BOCHKAREV,A.JOACHIMIAK, REMARK 1 AUTH 2 C.ARROWSMITH,A.EDWARDS,A.SAVCHENKO REMARK 1 TITL STRUCTURAL ANALYSES OF THE LIGAND BINDING SITES OF THE ICLR REMARK 1 TITL 2 FAMILY OF TRANSCRIPTIONAL REGULATORS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2980696.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 59563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3033 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9374 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 529 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : -10.08000 REMARK 3 B33 (A**2) : 8.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1T9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, PEG3350, TRIS PH 8.5, ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.24400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.24400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.76900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.76900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.24400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.76900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.24400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.76900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 GEL FILTRATION STUDIES SHOW THAT THE GLCR LIGAND REMARK 300 BINDING DOMAIN FORMS A MONOMER IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 HIS A 185 REMARK 465 PRO A 186 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 ARG B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 184 REMARK 465 HIS B 185 REMARK 465 PRO B 186 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 GLY C 1 REMARK 465 ARG C 2 REMARK 465 GLU C 3 REMARK 465 ASN C 4 REMARK 465 ALA C 184 REMARK 465 HIS C 185 REMARK 465 PRO C 186 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 ALA D 184 REMARK 465 HIS D 185 REMARK 465 PRO D 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 132 CB CYS A 132 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 57 48.35 -155.20 REMARK 500 ASN B 40 25.84 49.97 REMARK 500 ARG B 55 -179.87 -172.51 REMARK 500 CYS B 57 45.16 -149.16 REMARK 500 TYR C 6 160.11 -25.38 REMARK 500 ARG C 55 -179.11 -172.42 REMARK 500 CYS C 57 47.92 -150.18 REMARK 500 ARG D 55 -174.41 -173.38 REMARK 500 CYS D 57 50.50 -141.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T9L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE E. COLI GLYOXYLATE REGULATORY PROTEIN REMARK 900 LIGAND BINDING DOMAIN COMPLEXED WITH GLYOXYLATE REMARK 900 RELATED ID: 1TD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF E. COLI ICLR REMARK 900 RELATED ID: 1MKM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 0065, A MEMBER OF THE ICLR REMARK 900 TRANSCRIPTIONAL FACTOR FAMILY REMARK 900 RELATED ID: APC5051 RELATED DB: TARGETDB DBREF 1TF1 A 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 B 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 C 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 D 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 SEQADV 1TF1 MET A -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY A -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER A 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY A 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG A 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU A 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN A 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU A 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR A 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE A 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN A 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY A 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS A 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET A 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET B -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY B -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER B 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY B 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG B 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU B 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN B 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU B 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR B 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE B 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN B 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY B 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS B 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET B 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET C -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY C -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER C 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY C 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG C 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU C 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN C 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU C 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR C 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE C 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN C 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY C 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS C 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET C 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET D -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY D -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER D 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY D 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG D 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU D 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN D 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU D 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR D 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE D 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN D 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY D 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS D 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET D 11 UNP P0ACN4 CLONING ARTIFACT SEQRES 1 A 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 A 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 A 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 A 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 A 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 A 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 A 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 A 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 A 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 A 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 A 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 A 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 A 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 A 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 A 198 ALA HIS PRO SEQRES 1 B 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 B 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 B 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 B 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 B 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 B 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 B 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 B 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 B 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 B 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 B 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 B 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 B 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 B 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 B 198 ALA HIS PRO SEQRES 1 C 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 C 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 C 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 C 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 C 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 C 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 C 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 C 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 C 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 C 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 C 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 C 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 C 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 C 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 C 198 ALA HIS PRO SEQRES 1 D 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 D 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 D 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 D 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 D 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 D 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 D 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 D 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 D 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 D 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 D 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 D 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 D 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 D 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 D 198 ALA HIS PRO FORMUL 5 HOH *595(H2 O) HELIX 1 1 PHE A 7 GLY A 29 1 23 HELIX 2 2 SER A 69 TYR A 77 1 9 HELIX 3 3 ALA A 80 GLY A 92 1 13 HELIX 4 4 ASP A 103 GLY A 118 1 16 HELIX 5 5 THR A 158 ASP A 160 5 3 HELIX 6 6 ARG A 161 GLY A 181 1 21 HELIX 7 7 TYR B 6 GLY B 29 1 24 HELIX 8 8 SER B 69 TYR B 77 1 9 HELIX 9 9 ALA B 80 GLY B 92 1 13 HELIX 10 10 ASP B 103 GLY B 118 1 16 HELIX 11 11 THR B 158 ASP B 160 5 3 HELIX 12 12 ARG B 161 LYS B 183 1 23 HELIX 13 13 TYR C 6 GLY C 29 1 24 HELIX 14 14 SER C 69 TYR C 77 1 9 HELIX 15 15 ALA C 80 GLY C 92 1 13 HELIX 16 16 ASP C 103 GLY C 118 1 16 HELIX 17 17 THR C 158 ASP C 160 5 3 HELIX 18 18 ARG C 161 LYS C 183 1 23 HELIX 19 19 PHE D 7 GLY D 29 1 23 HELIX 20 20 SER D 69 TYR D 77 1 9 HELIX 21 21 ALA D 80 GLY D 92 1 13 HELIX 22 22 ASP D 103 GLY D 118 1 16 HELIX 23 23 THR D 158 ASP D 160 5 3 HELIX 24 24 ARG D 161 GLY D 181 1 21 SHEET 1 A 6 ARG A 63 PRO A 65 0 SHEET 2 A 6 GLU A 41 LEU A 48 -1 N ALA A 42 O LEU A 64 SHEET 3 A 6 THR A 31 ASN A 38 -1 N VAL A 34 O ILE A 45 SHEET 4 A 6 VAL A 144 PRO A 153 -1 O SER A 149 N ASN A 33 SHEET 5 A 6 LEU A 130 TYR A 138 -1 N ILE A 137 O ALA A 146 SHEET 6 A 6 THR A 120 LYS A 123 -1 N ASP A 122 O CYS A 132 SHEET 1 B 2 VAL A 54 MET A 56 0 SHEET 2 B 2 VAL B 54 MET B 56 -1 O ARG B 55 N ARG A 55 SHEET 1 C 6 ARG B 63 LEU B 64 0 SHEET 2 C 6 GLU B 41 LEU B 48 -1 N ALA B 42 O LEU B 64 SHEET 3 C 6 THR B 31 ASN B 38 -1 N ILE B 36 O VAL B 43 SHEET 4 C 6 VAL B 144 PRO B 153 -1 O SER B 149 N ASN B 33 SHEET 5 C 6 LEU B 130 TYR B 138 -1 N ILE B 137 O ALA B 146 SHEET 6 C 6 THR B 120 LYS B 123 -1 N THR B 120 O ALA B 134 SHEET 1 D 6 ARG C 63 PRO C 65 0 SHEET 2 D 6 GLU C 41 LEU C 48 -1 N ALA C 42 O LEU C 64 SHEET 3 D 6 THR C 31 ASN C 38 -1 N ILE C 36 O VAL C 43 SHEET 4 D 6 VAL C 144 PRO C 153 -1 O ALA C 147 N ALA C 35 SHEET 5 D 6 LEU C 130 TYR C 138 -1 N ASN C 131 O GLY C 152 SHEET 6 D 6 THR C 120 LYS C 123 -1 N THR C 120 O ALA C 134 SHEET 1 E 6 ARG D 63 LEU D 64 0 SHEET 2 E 6 GLU D 41 LEU D 48 -1 N ALA D 42 O LEU D 64 SHEET 3 E 6 THR D 31 ASN D 38 -1 N VAL D 32 O LEU D 48 SHEET 4 E 6 VAL D 144 PRO D 153 -1 O SER D 149 N ASN D 33 SHEET 5 E 6 LEU D 130 TYR D 138 -1 N ILE D 137 O VAL D 145 SHEET 6 E 6 THR D 120 LYS D 123 -1 N THR D 120 O ALA D 134 CRYST1 92.796 97.538 144.488 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010776 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006921 0.00000 MASTER 394 0 0 24 26 0 0 6 0 0 0 64 END