HEADER EXTRACELLULAR MATRIX 24-MAY-04 1TDQ TITLE STRUCTURAL BASIS FOR THE INTERACTIONS BETWEEN TENASCINS AND THE C-TYPE TITLE 2 LECTIN DOMAINS FROM LECTICANS: EVIDENCE FOR A CROSS-LINKING ROLE FOR TITLE 3 TENASCINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENASCIN-R; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III REPEATS 3-5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AGGRECAN CORE PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TYPE LECTIN DOMAIN; COMPND 10 SYNONYM: CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN, CSPCP; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG-1; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: AGC1, AGC; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: EMBRYONAL KIDNEY 293-EBNA; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCEP4 KEYWDS EXTRACELLULAR MATRIX, LECTICANS, TENASCINS, PROTEIN-PROTEIN KEYWDS 2 INTERACTIONS, C-TYPE LECTIN DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LUNDELL,A.I.OLIN,M.MOERGELIN,S.AL-KARADAGHI,A.ASPBERG,D.T.LOGAN REVDAT 5 31-MAR-21 1TDQ 1 SOURCE REMARK SEQADV LINK REVDAT 4 07-MAR-18 1TDQ 1 REMARK REVDAT 3 13-JUL-11 1TDQ 1 VERSN REVDAT 2 24-FEB-09 1TDQ 1 VERSN REVDAT 1 31-AUG-04 1TDQ 0 JRNL AUTH A.LUNDELL,A.I.OLIN,M.MOERGELIN,S.AL-KARADAGHI,A.ASPBERG, JRNL AUTH 2 D.T.LOGAN JRNL TITL STRUCTURAL BASIS FOR INTERACTIONS BETWEEN TENASCINS AND JRNL TITL 2 LECTICAN C-TYPE LECTIN DOMAINS: EVIDENCE FOR A CROSSLINKING JRNL TITL 3 ROLE FOR TENASCINS JRNL REF STRUCTURE V. 12 1495 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296743 JRNL DOI 10.1016/J.STR.2004.05.021 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 66.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : -2.41000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.488 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3217 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2794 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4381 ; 1.296 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6522 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 7.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3612 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 654 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 568 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3106 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2058 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.158 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1980 ; 1.858 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 3.001 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 2.179 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1159 ; 3.448 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8311 -14.5716 67.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.0218 REMARK 3 T33: 0.2007 T12: 0.0629 REMARK 3 T13: -0.1212 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 7.3924 L22: 11.2349 REMARK 3 L33: 7.7243 L12: -0.5306 REMARK 3 L13: -0.8603 L23: 1.7102 REMARK 3 S TENSOR REMARK 3 S11: -0.3263 S12: -0.1029 S13: 0.1680 REMARK 3 S21: 0.5441 S22: 0.4591 S23: -1.6041 REMARK 3 S31: 0.3047 S32: 0.6204 S33: -0.1327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4146 -3.0515 94.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2960 REMARK 3 T33: 0.1973 T12: -0.0362 REMARK 3 T13: -0.0287 T23: -0.0651 REMARK 3 L TENSOR REMARK 3 L11: 2.6176 L22: 5.6520 REMARK 3 L33: 7.9185 L12: -1.5728 REMARK 3 L13: -0.2808 L23: 2.4933 REMARK 3 S TENSOR REMARK 3 S11: 0.3582 S12: 0.3614 S13: -0.1449 REMARK 3 S21: -0.8670 S22: -0.2323 S23: 0.3796 REMARK 3 S31: 0.1859 S32: -0.5338 S33: -0.1259 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3764 16.7298 123.6301 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 1.0612 REMARK 3 T33: 0.4596 T12: 0.1692 REMARK 3 T13: 0.0478 T23: -0.4253 REMARK 3 L TENSOR REMARK 3 L11: 7.9842 L22: 13.8679 REMARK 3 L33: 14.3207 L12: -6.4732 REMARK 3 L13: -6.0959 L23: 8.2368 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: -0.1288 S13: 0.1599 REMARK 3 S21: 0.3670 S22: -1.3083 S23: 1.1360 REMARK 3 S31: -0.5769 S32: -2.8042 S33: 1.4143 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 126 REMARK 3 RESIDUE RANGE : B 127 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9455 5.2956 111.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.2804 REMARK 3 T33: 0.4225 T12: -0.0388 REMARK 3 T13: -0.0099 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.1695 L22: 4.7064 REMARK 3 L33: 5.9253 L12: -0.2887 REMARK 3 L13: 1.7323 L23: -1.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.1884 S12: 0.0148 S13: 0.2760 REMARK 3 S21: 0.3045 S22: -0.0410 S23: -0.6304 REMARK 3 S31: -0.3903 S32: 0.4491 S33: 0.2293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.097 REMARK 200 MONOCHROMATOR : ASYMMETRICALLY CUT SI(111) REMARK 200 OPTICS : ASYMMETRICALLY CUT SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19800 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% PEG 8000, 150MM CALCIUM ACETATE, REMARK 280 2-4% PEG MME 750, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.26000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL COMPLEX CONSISTS OF FULL-LENTH AGGRECAN AND REMARK 300 TENASCIN-R, REPRESENTED HERE BY FNIII DOMAINS 3-5 FROM TENASCIN REMARK 300 (CHAIN A) AND THE C-TYPE LECTIN DOMAIN OF AGGRECAN (CHAIN B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 PRO A -8 REMARK 465 GLY A -7 REMARK 465 ILE A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 THR A 272 REMARK 465 ARG B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 GLN B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 205 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 106 OD2 ASP A 155 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 5 CD GLU B 5 OE2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 56 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 -156.50 -87.38 REMARK 500 GLU A 44 90.82 -58.72 REMARK 500 GLU A 134 178.99 -57.86 REMARK 500 ASN A 171 -148.63 60.91 REMARK 500 ASP A 191 28.64 49.52 REMARK 500 SER A 197 56.23 -140.10 REMARK 500 TRP A 206 147.37 -171.14 REMARK 500 THR A 242 -33.23 -130.52 REMARK 500 GLN B 2 -56.86 -152.14 REMARK 500 CYS B 3 122.16 145.74 REMARK 500 GLU B 106 62.58 -104.77 REMARK 500 ARG B 107 16.93 51.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 128 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD1 REMARK 620 2 ASP B 64 OD2 48.6 REMARK 620 3 GLU B 68 OE2 118.4 70.5 REMARK 620 4 GLU B 68 OE1 99.8 75.2 50.0 REMARK 620 5 ASN B 91 OD1 165.6 140.6 70.4 76.8 REMARK 620 6 GLU B 97 O 91.0 138.4 150.6 129.8 81.0 REMARK 620 7 ASP B 98 OD1 66.9 96.8 119.9 69.9 99.0 69.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 129 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 68 OE1 REMARK 620 2 ASP B 98 OD1 69.5 REMARK 620 3 ASP B 98 OD2 117.6 49.7 REMARK 620 4 HOH B 139 O 70.2 139.0 170.9 REMARK 620 5 HOH B 140 O 152.3 122.6 73.9 97.0 REMARK 620 6 HOH B 141 O 84.2 89.2 82.4 94.2 72.0 REMARK 620 7 HOH B 142 O 82.5 73.4 91.7 94.2 123.8 161.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 127 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 88 OE1 REMARK 620 2 ASP B 90 OD1 69.5 REMARK 620 3 GLU B 97 OE2 142.4 73.8 REMARK 620 4 ASN B 111 OD1 76.0 145.0 141.1 REMARK 620 5 ASP B 112 O 141.4 139.9 69.1 73.7 REMARK 620 6 ASP B 112 OD1 83.3 94.1 91.1 87.9 72.3 REMARK 620 7 HOH B 137 O 110.7 103.1 85.5 83.0 88.8 160.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 129 DBREF 1TDQ A 3 272 UNP Q05546 TENR_RAT 502 771 DBREF 1TDQ B -2 126 UNP P07897 PGCA_RAT 1909 2037 SEQADV 1TDQ GLY A -10 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ SER A -9 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ PRO A -8 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -7 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ILE A -6 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ SER A -5 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -4 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -3 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -2 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -1 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A 0 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ILE A 1 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ PRO A 2 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ARG B -3 UNP P07897 CLONING ARTIFACT SEQRES 1 A 283 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE PRO SEQRES 2 A 283 VAL ILE ASP GLY PRO THR GLN ILE LEU VAL ARG ASP VAL SEQRES 3 A 283 SER ASP THR VAL ALA PHE VAL GLU TRP THR PRO PRO ARG SEQRES 4 A 283 ALA LYS VAL ASP PHE ILE LEU LEU LYS TYR GLY LEU VAL SEQRES 5 A 283 GLY GLY GLU GLY GLY LYS THR THR PHE ARG LEU GLN PRO SEQRES 6 A 283 PRO LEU SER GLN TYR SER VAL GLN ALA LEU ARG PRO GLY SEQRES 7 A 283 SER ARG TYR GLU VAL SER ILE SER ALA VAL ARG GLY THR SEQRES 8 A 283 ASN GLU SER ASP ALA SER SER THR GLN PHE THR THR GLU SEQRES 9 A 283 ILE ASP ALA PRO LYS ASN LEU ARG VAL GLY SER ARG THR SEQRES 10 A 283 ALA THR SER LEU ASP LEU GLU TRP ASP ASN SER GLU ALA SEQRES 11 A 283 GLU ALA GLN GLU TYR LYS VAL VAL TYR SER THR LEU ALA SEQRES 12 A 283 GLY GLU GLN TYR HIS GLU VAL LEU VAL PRO LYS GLY ILE SEQRES 13 A 283 GLY PRO THR THR LYS THR THR LEU THR ASP LEU VAL PRO SEQRES 14 A 283 GLY THR GLU TYR GLY VAL GLY ILE SER ALA VAL MET ASN SEQRES 15 A 283 SER LYS GLN SER ILE PRO ALA THR MET ASN ALA ARG THR SEQRES 16 A 283 GLU LEU ASP SER PRO ARG ASP LEU MET VAL THR ALA SER SEQRES 17 A 283 SER GLU THR SER ILE SER LEU ILE TRP THR LYS ALA SER SEQRES 18 A 283 GLY PRO ILE ASP HIS TYR ARG ILE THR PHE THR PRO SER SEQRES 19 A 283 SER GLY ILE SER SER GLU VAL THR VAL PRO ARG ASP ARG SEQRES 20 A 283 THR SER TYR THR LEU THR ASP LEU GLU PRO GLY ALA GLU SEQRES 21 A 283 TYR ILE ILE SER ILE THR ALA GLU ARG GLY ARG GLN GLN SEQRES 22 A 283 SER LEU GLU SER THR VAL ASP ALA PHE THR SEQRES 1 B 130 ARG ALA ASP GLN GLU GLN CYS GLU GLU GLY TRP THR LYS SEQRES 2 B 130 PHE GLN GLY HIS CYS TYR ARG HIS PHE PRO ASP ARG GLU SEQRES 3 B 130 THR TRP VAL ASP ALA GLU ARG ARG CYS ARG GLU GLN GLN SEQRES 4 B 130 SER HIS LEU SER SER ILE VAL THR PRO GLU GLU GLN GLU SEQRES 5 B 130 PHE VAL ASN LYS ASN ALA GLN ASP TYR GLN TRP ILE GLY SEQRES 6 B 130 LEU ASN ASP ARG THR ILE GLU GLY ASP PHE ARG TRP SER SEQRES 7 B 130 ASP GLY HIS SER LEU GLN PHE GLU LYS TRP ARG PRO ASN SEQRES 8 B 130 GLN PRO ASP ASN PHE PHE ALA THR GLY GLU ASP CYS VAL SEQRES 9 B 130 VAL MET ILE TRP HIS GLU ARG GLY GLU TRP ASN ASP VAL SEQRES 10 B 130 PRO CYS ASN TYR GLN LEU PRO PHE THR CYS LYS LYS GLY HET CA B 127 1 HET CA B 128 1 HET CA B 129 1 HETNAM CA CALCIUM ION FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *38(H2 O) HELIX 1 1 THR B 23 GLN B 34 1 12 HELIX 2 2 THR B 43 GLN B 55 1 13 SHEET 1 A 3 THR A 8 VAL A 15 0 SHEET 2 A 3 ALA A 20 THR A 25 -1 O GLU A 23 N LEU A 11 SHEET 3 A 3 GLN A 58 VAL A 61 -1 O VAL A 61 N ALA A 20 SHEET 1 B 4 THR A 48 LEU A 52 0 SHEET 2 B 4 PHE A 33 LEU A 40 -1 N ILE A 34 O LEU A 52 SHEET 3 B 4 ARG A 69 ARG A 78 -1 O SER A 75 N LEU A 35 SHEET 4 B 4 ASN A 81 GLU A 82 -1 O ASN A 81 N ARG A 78 SHEET 1 C 4 THR A 48 LEU A 52 0 SHEET 2 C 4 PHE A 33 LEU A 40 -1 N ILE A 34 O LEU A 52 SHEET 3 C 4 ARG A 69 ARG A 78 -1 O SER A 75 N LEU A 35 SHEET 4 C 4 SER A 86 THR A 91 -1 O PHE A 90 N TYR A 70 SHEET 1 D 3 LYS A 98 ARG A 105 0 SHEET 2 D 3 LEU A 110 ASP A 115 -1 O ASP A 115 N LYS A 98 SHEET 3 D 3 THR A 148 LEU A 153 -1 O THR A 151 N LEU A 112 SHEET 1 E 4 HIS A 137 PRO A 142 0 SHEET 2 E 4 GLU A 123 THR A 130 -1 N TYR A 128 O HIS A 137 SHEET 3 E 4 GLU A 161 MET A 170 -1 O GLY A 163 N SER A 129 SHEET 4 E 4 LYS A 173 GLN A 174 -1 O LYS A 173 N MET A 170 SHEET 1 F 4 HIS A 137 PRO A 142 0 SHEET 2 F 4 GLU A 123 THR A 130 -1 N TYR A 128 O HIS A 137 SHEET 3 F 4 GLU A 161 MET A 170 -1 O GLY A 163 N SER A 129 SHEET 4 F 4 ALA A 178 ARG A 183 -1 O ALA A 182 N TYR A 162 SHEET 1 G 3 ARG A 190 SER A 197 0 SHEET 2 G 3 ILE A 202 THR A 207 -1 O THR A 207 N ARG A 190 SHEET 3 G 3 SER A 238 LEU A 241 -1 O LEU A 241 N ILE A 202 SHEET 1 H 4 SER A 228 PRO A 233 0 SHEET 2 H 4 HIS A 215 THR A 221 -1 N TYR A 216 O VAL A 232 SHEET 3 H 4 TYR A 250 ARG A 258 -1 O SER A 253 N THR A 219 SHEET 4 H 4 GLN A 261 GLN A 262 -1 O GLN A 261 N ARG A 258 SHEET 1 I 4 SER A 228 PRO A 233 0 SHEET 2 I 4 HIS A 215 THR A 221 -1 N TYR A 216 O VAL A 232 SHEET 3 I 4 TYR A 250 ARG A 258 -1 O SER A 253 N THR A 219 SHEET 4 I 4 SER A 266 ALA A 270 -1 O VAL A 268 N ILE A 252 SHEET 1 J 4 THR B 8 PHE B 10 0 SHEET 2 J 4 HIS B 13 GLU B 22 -1 O HIS B 13 N PHE B 10 SHEET 3 J 4 LEU B 119 LYS B 125 -1 O LYS B 125 N CYS B 14 SHEET 4 J 4 HIS B 37 LEU B 38 -1 N HIS B 37 O LYS B 124 SHEET 1 K 4 ARG B 72 TRP B 73 0 SHEET 2 K 4 GLN B 58 ASN B 63 -1 N ASN B 63 O ARG B 72 SHEET 3 K 4 GLU B 97 MET B 102 -1 O MET B 102 N GLN B 58 SHEET 4 K 4 TRP B 110 PRO B 114 -1 O VAL B 113 N CYS B 99 SSBOND 1 CYS B 31 CYS B 123 1555 1555 2.07 SSBOND 2 CYS B 99 CYS B 115 1555 1555 2.05 LINK OD1 ASP B 64 CA CA B 128 1555 1555 2.65 LINK OD2 ASP B 64 CA CA B 128 1555 1555 2.41 LINK OE2 GLU B 68 CA CA B 128 1555 1555 2.54 LINK OE1 GLU B 68 CA CA B 128 1555 1555 2.66 LINK OE1 GLU B 68 CA CA B 129 1555 1555 2.53 LINK OE1 GLN B 88 CA CA B 127 1555 1555 2.35 LINK OD1 ASP B 90 CA CA B 127 1555 1555 2.40 LINK OD1 ASN B 91 CA CA B 128 1555 1555 2.54 LINK OE2 GLU B 97 CA CA B 127 1555 1555 2.43 LINK O GLU B 97 CA CA B 128 1555 1555 2.45 LINK OD1 ASP B 98 CA CA B 128 1555 1555 2.45 LINK OD1 ASP B 98 CA CA B 129 1555 1555 2.61 LINK OD2 ASP B 98 CA CA B 129 1555 1555 2.55 LINK OD1 ASN B 111 CA CA B 127 1555 1555 2.30 LINK O ASP B 112 CA CA B 127 1555 1555 2.48 LINK OD1 ASP B 112 CA CA B 127 1555 1555 2.23 LINK CA CA B 127 O HOH B 137 1555 1555 2.21 LINK CA CA B 129 O HOH B 139 1555 1555 2.26 LINK CA CA B 129 O HOH B 140 1555 1555 2.50 LINK CA CA B 129 O HOH B 141 1555 1555 2.15 LINK CA CA B 129 O HOH B 142 1555 1555 2.84 CISPEP 1 GLN B 88 PRO B 89 0 1.75 SITE 1 AC1 6 GLN B 88 ASP B 90 GLU B 97 ASN B 111 SITE 2 AC1 6 ASP B 112 HOH B 137 SITE 1 AC2 5 ASP B 64 GLU B 68 ASN B 91 GLU B 97 SITE 2 AC2 5 ASP B 98 SITE 1 AC3 6 GLU B 68 ASP B 98 HOH B 139 HOH B 140 SITE 2 AC3 6 HOH B 141 HOH B 142 CRYST1 112.520 86.420 57.600 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017362 0.00000 MASTER 483 0 3 2 41 0 6 6 0 0 0 32 END