HEADER TRANSFERASE 13-MAY-04 1T8U TITLE CRYSTAL STRUCTURE OF HUMAN 3-O-SULFOTRANSFERASE-3 WITH BOUND PAP AND TITLE 2 TETRASACCHARIDE SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARAN SULFATE D-GLUCOSAMINYL 3-O-SULFOTRANSFERASE 3A1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: HEPARIN-GLUCOSAMINE 3-O-SULFOTRANSFERASE, 3-OST-3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3-OST-3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS ALPHA-BETA MOTIF, SUBSTRATE-BINDING CLEFT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MOON,S.C.EDAVETTAL,J.M.KRAHN,E.M.MUNOZ,M.NEGISHI,R.J.LINHARDT, AUTHOR 2 J.LIU,L.C.PEDERSEN REVDAT 6 29-JUL-20 1T8U 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 11-OCT-17 1T8U 1 REMARK REVDAT 4 13-JUL-11 1T8U 1 VERSN REVDAT 3 24-FEB-09 1T8U 1 VERSN REVDAT 2 26-OCT-04 1T8U 1 JRNL REVDAT 1 31-AUG-04 1T8U 0 JRNL AUTH A.F.MOON,S.C.EDAVETTAL,J.M.KRAHN,E.M.MUNOZ,M.NEGISHI, JRNL AUTH 2 R.J.LINHARDT,J.LIU,L.C.PEDERSEN JRNL TITL STRUCTURAL ANALYSIS OF THE SULFOTRANSFERASE JRNL TITL 2 (3-O-SULFOTRANSFERASE ISOFORM 3) INVOLVED IN THE JRNL TITL 3 BIOSYNTHESIS OF AN ENTRY RECEPTOR FOR HERPES SIMPLEX VIRUS 1 JRNL REF J.BIOL.CHEM. V. 279 45185 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15304505 JRNL DOI 10.1074/JBC.M405013200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 346751.180 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 38340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5745 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 307 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.29000 REMARK 3 B22 (A**2) : -5.19000 REMARK 3 B33 (A**2) : 7.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.940 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 52.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : 3OST3.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PAP2_SO4.TOP REMARK 3 TOPOLOGY FILE 5 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.02400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: H3-OST-3 WITH BOUND PAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM ACETATE, PEG REMARK 280 4000, PAP, PH 5.5, MICRO-SEEDING, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.96550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.96550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.40300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.26250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.40300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.26250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.96550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.40300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.26250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.96550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.40300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.26250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.80600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.96550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 135 REMARK 465 ARG A 274 REMARK 465 THR A 275 REMARK 465 ALA A 276 REMARK 465 GLY B 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 145 CG CD1 CD2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 LEU B 145 CG CD1 CD2 REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 -72.08 -43.15 REMARK 500 ASP A 193 6.73 -67.82 REMARK 500 PRO B 361 175.77 -56.28 REMARK 500 HIS B 362 114.44 -167.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 O REMARK 620 2 ASP A 252 OD1 81.0 REMARK 620 3 THR A 256 OG1 88.0 165.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 252 O REMARK 620 2 ASP B 252 OD1 82.0 REMARK 620 3 THR B 256 OG1 97.1 163.6 REMARK 620 4 SGN C 1 O3S 85.9 72.2 91.4 REMARK 620 5 SGN C 1 O3 168.4 100.9 76.8 84.3 REMARK 620 6 IDS C 2 O6B 127.5 86.2 106.8 137.5 64.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S6T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MURINE 3-O-SULFOTRANSFERASE-1 REMARK 900 RELATED ID: 1HY3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ESTROGEN SULFOTRANSFERASE WITH BOUND REMARK 900 PAPS SUBSTRATE REMARK 900 RELATED ID: 1BFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BASIC FIBROBLAST GROWTH FACTOR WITH BOUND REMARK 900 TETRASACCHARIDE REMARK 900 RELATED ID: 1T8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN 3-O-SULFOTRANSFERASE-3 WITH BOUND PAP DBREF 1T8U A 139 406 GB 5174465 NP_006033 139 406 DBREF 1T8U B 139 406 GB 5174465 NP_006033 139 406 SEQADV 1T8U GLY A 135 GB 5174465 CLONING ARTIFACT SEQADV 1T8U PRO A 136 GB 5174465 CLONING ARTIFACT SEQADV 1T8U ASN A 137 GB 5174465 CLONING ARTIFACT SEQADV 1T8U SER A 138 GB 5174465 CLONING ARTIFACT SEQADV 1T8U GLY B 135 GB 5174465 CLONING ARTIFACT SEQADV 1T8U PRO B 136 GB 5174465 CLONING ARTIFACT SEQADV 1T8U ASN B 137 GB 5174465 CLONING ARTIFACT SEQADV 1T8U SER B 138 GB 5174465 CLONING ARTIFACT SEQRES 1 A 272 GLY PRO ASN SER GLY THR LEU ALA LEU LEU LEU ASP GLU SEQRES 2 A 272 GLY SER LYS GLN LEU PRO GLN ALA ILE ILE ILE GLY VAL SEQRES 3 A 272 LYS LYS GLY GLY THR ARG ALA LEU LEU GLU PHE LEU ARG SEQRES 4 A 272 VAL HIS PRO ASP VAL ARG ALA VAL GLY ALA GLU PRO HIS SEQRES 5 A 272 PHE PHE ASP ARG SER TYR ASP LYS GLY LEU ALA TRP TYR SEQRES 6 A 272 ARG ASP LEU MET PRO ARG THR LEU ASP GLY GLN ILE THR SEQRES 7 A 272 MET GLU LYS THR PRO SER TYR PHE VAL THR ARG GLU ALA SEQRES 8 A 272 PRO ALA ARG ILE SER ALA MET SER LYS ASP THR LYS LEU SEQRES 9 A 272 ILE VAL VAL VAL ARG ASP PRO VAL THR ARG ALA ILE SER SEQRES 10 A 272 ASP TYR THR GLN THR LEU SER LYS ARG PRO ASP ILE PRO SEQRES 11 A 272 THR PHE GLU SER LEU THR PHE LYS ASN ARG THR ALA GLY SEQRES 12 A 272 LEU ILE ASP THR SER TRP SER ALA ILE GLN ILE GLY ILE SEQRES 13 A 272 TYR ALA LYS HIS LEU GLU HIS TRP LEU ARG HIS PHE PRO SEQRES 14 A 272 ILE ARG GLN MET LEU PHE VAL SER GLY GLU ARG LEU ILE SEQRES 15 A 272 SER ASP PRO ALA GLY GLU LEU GLY ARG VAL GLN ASP PHE SEQRES 16 A 272 LEU GLY LEU LYS ARG ILE ILE THR ASP LYS HIS PHE TYR SEQRES 17 A 272 PHE ASN LYS THR LYS GLY PHE PRO CYS LEU LYS LYS ALA SEQRES 18 A 272 GLU GLY SER SER ARG PRO HIS CYS LEU GLY LYS THR LYS SEQRES 19 A 272 GLY ARG THR HIS PRO GLU ILE ASP ARG GLU VAL VAL ARG SEQRES 20 A 272 ARG LEU ARG GLU PHE TYR ARG PRO PHE ASN LEU LYS PHE SEQRES 21 A 272 TYR GLN MET THR GLY HIS ASP PHE GLY TRP ASP GLY SEQRES 1 B 272 GLY PRO ASN SER GLY THR LEU ALA LEU LEU LEU ASP GLU SEQRES 2 B 272 GLY SER LYS GLN LEU PRO GLN ALA ILE ILE ILE GLY VAL SEQRES 3 B 272 LYS LYS GLY GLY THR ARG ALA LEU LEU GLU PHE LEU ARG SEQRES 4 B 272 VAL HIS PRO ASP VAL ARG ALA VAL GLY ALA GLU PRO HIS SEQRES 5 B 272 PHE PHE ASP ARG SER TYR ASP LYS GLY LEU ALA TRP TYR SEQRES 6 B 272 ARG ASP LEU MET PRO ARG THR LEU ASP GLY GLN ILE THR SEQRES 7 B 272 MET GLU LYS THR PRO SER TYR PHE VAL THR ARG GLU ALA SEQRES 8 B 272 PRO ALA ARG ILE SER ALA MET SER LYS ASP THR LYS LEU SEQRES 9 B 272 ILE VAL VAL VAL ARG ASP PRO VAL THR ARG ALA ILE SER SEQRES 10 B 272 ASP TYR THR GLN THR LEU SER LYS ARG PRO ASP ILE PRO SEQRES 11 B 272 THR PHE GLU SER LEU THR PHE LYS ASN ARG THR ALA GLY SEQRES 12 B 272 LEU ILE ASP THR SER TRP SER ALA ILE GLN ILE GLY ILE SEQRES 13 B 272 TYR ALA LYS HIS LEU GLU HIS TRP LEU ARG HIS PHE PRO SEQRES 14 B 272 ILE ARG GLN MET LEU PHE VAL SER GLY GLU ARG LEU ILE SEQRES 15 B 272 SER ASP PRO ALA GLY GLU LEU GLY ARG VAL GLN ASP PHE SEQRES 16 B 272 LEU GLY LEU LYS ARG ILE ILE THR ASP LYS HIS PHE TYR SEQRES 17 B 272 PHE ASN LYS THR LYS GLY PHE PRO CYS LEU LYS LYS ALA SEQRES 18 B 272 GLU GLY SER SER ARG PRO HIS CYS LEU GLY LYS THR LYS SEQRES 19 B 272 GLY ARG THR HIS PRO GLU ILE ASP ARG GLU VAL VAL ARG SEQRES 20 B 272 ARG LEU ARG GLU PHE TYR ARG PRO PHE ASN LEU LYS PHE SEQRES 21 B 272 TYR GLN MET THR GLY HIS ASP PHE GLY TRP ASP GLY HET SGN C 1 20 HET IDS C 2 16 HET SGN C 3 19 HET UAP C 4 15 HET SO4 A 700 5 HET NA A 702 1 HET NA B 701 1 HET A3P B 602 27 HET A3P B 603 27 HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM UAP 4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENOPYRANURONIC HETNAM 2 UAP ACID HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETSYN IDS O2-SULFO-GLUCURONIC ACID FORMUL 3 SGN 2(C6 H13 N O11 S2) FORMUL 3 IDS C6 H10 O10 S FORMUL 3 UAP C6 H8 O9 S FORMUL 4 SO4 O4 S 2- FORMUL 5 NA 2(NA 1+) FORMUL 7 A3P 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *358(H2 O) HELIX 1 1 ASN A 137 GLU A 147 1 11 HELIX 2 2 GLY A 164 ARG A 173 1 10 HELIX 3 3 SER A 191 LYS A 194 5 4 HELIX 4 4 GLY A 195 MET A 203 1 9 HELIX 5 5 SER A 218 THR A 222 5 5 HELIX 6 6 GLU A 224 SER A 233 1 10 HELIX 7 7 ASP A 244 ARG A 260 1 17 HELIX 8 8 THR A 265 PHE A 271 1 7 HELIX 9 9 TRP A 283 ILE A 288 1 6 HELIX 10 10 ILE A 290 LEU A 299 1 10 HELIX 11 11 PRO A 303 ARG A 305 5 3 HELIX 12 12 GLY A 312 ASP A 318 1 7 HELIX 13 13 ASP A 318 LEU A 330 1 13 HELIX 14 14 THR A 337 LYS A 339 5 3 HELIX 15 15 ASP A 376 GLY A 399 1 24 HELIX 16 16 ASN B 137 GLY B 148 1 12 HELIX 17 17 GLY B 164 ARG B 173 1 10 HELIX 18 18 SER B 191 ASP B 193 5 3 HELIX 19 19 LYS B 194 MET B 203 1 10 HELIX 20 20 PRO B 217 THR B 222 5 6 HELIX 21 21 GLU B 224 SER B 233 1 10 HELIX 22 22 ASP B 244 ARG B 260 1 17 HELIX 23 23 THR B 265 THR B 270 1 6 HELIX 24 24 TRP B 283 ILE B 288 1 6 HELIX 25 25 ILE B 290 LEU B 299 1 10 HELIX 26 26 PRO B 303 ARG B 305 5 3 HELIX 27 27 GLY B 312 ASP B 318 1 7 HELIX 28 28 ASP B 318 LEU B 330 1 13 HELIX 29 29 THR B 337 LYS B 339 5 3 HELIX 30 30 ASP B 376 GLY B 399 1 24 SHEET 1 A 2 SER A 149 LYS A 150 0 SHEET 2 A 2 ARG A 205 THR A 206 -1 O THR A 206 N SER A 149 SHEET 1 B 5 VAL A 178 ALA A 180 0 SHEET 2 B 5 ILE A 211 LYS A 215 1 O ILE A 211 N ARG A 179 SHEET 3 B 5 ALA A 155 GLY A 159 1 N ILE A 157 O GLU A 214 SHEET 4 B 5 LYS A 237 VAL A 242 1 O VAL A 241 N GLY A 159 SHEET 5 B 5 MET A 307 SER A 311 1 O LEU A 308 N VAL A 240 SHEET 1 C 2 PHE A 341 ASN A 344 0 SHEET 2 C 2 PHE A 349 LEU A 352 -1 O CYS A 351 N TYR A 342 SHEET 1 D 5 VAL B 178 ALA B 180 0 SHEET 2 D 5 ILE B 211 LYS B 215 1 O ILE B 211 N ARG B 179 SHEET 3 D 5 ALA B 155 GLY B 159 1 N ILE B 157 O GLU B 214 SHEET 4 D 5 LYS B 237 VAL B 242 1 O VAL B 241 N GLY B 159 SHEET 5 D 5 MET B 307 SER B 311 1 O LEU B 308 N VAL B 240 SHEET 1 E 2 PHE B 271 ASN B 273 0 SHEET 2 E 2 LEU B 278 ILE B 279 -1 O LEU B 278 N LYS B 272 SHEET 1 F 2 PHE B 341 ASN B 344 0 SHEET 2 F 2 PHE B 349 LEU B 352 -1 O CYS B 351 N TYR B 342 SSBOND 1 CYS A 351 CYS A 363 1555 1555 2.03 SSBOND 2 CYS B 351 CYS B 363 1555 1555 2.03 LINK O4 SGN C 1 C1 IDS C 2 1555 1555 1.39 LINK O4 IDS C 2 C1 SGN C 3 1555 1555 1.40 LINK O4 SGN C 3 C1 UAP C 4 1555 1555 1.39 LINK O ASP A 252 NA NA A 702 1555 1555 2.56 LINK OD1 ASP A 252 NA NA A 702 1555 1555 2.19 LINK OG1 THR A 256 NA NA A 702 1555 1555 2.24 LINK O ASP B 252 NA NA B 701 1555 1555 2.54 LINK OD1 ASP B 252 NA NA B 701 1555 1555 2.37 LINK OG1 THR B 256 NA NA B 701 1555 1555 2.31 LINK NA NA B 701 O3S SGN C 1 1555 1555 2.39 LINK NA NA B 701 O3 SGN C 1 1555 1555 2.53 LINK NA NA B 701 O6B IDS C 2 1555 1555 2.74 CISPEP 1 GLY A 159 VAL A 160 0 -0.87 CISPEP 2 GLY B 159 VAL B 160 0 -1.90 CRYST1 80.806 154.525 91.931 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010878 0.00000 MASTER 334 0 9 30 18 0 0 6 0 0 0 42 END