HEADER HYDROLASE 06-MAY-04 1T6C TITLE STRUCTURAL CHARACTERIZATION OF THE PPX/GPPA PROTEIN FAMILY: CRYSTAL TITLE 2 STRUCTURE OF THE AQUIFEX AEOLICUS FAMILY MEMBER COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOPOLYPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPX/GPPA PHOSPHATASE; COMPND 5 EC: 3.6.1.11, 3.6.1.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: PPX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA/BETA PROTEIN, ACTIN-LIKE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KRISTENSEN,M.LAURBERG,A.LILJAS,J.S.KASTRUP,M.GAJHEDE REVDAT 3 13-JUL-11 1T6C 1 VERSN REVDAT 2 24-FEB-09 1T6C 1 VERSN REVDAT 1 03-AUG-04 1T6C 0 JRNL AUTH O.KRISTENSEN,M.LAURBERG,A.LILJAS,J.S.KASTRUP,M.GAJHEDE JRNL TITL STRUCTURAL CHARACTERIZATION OF THE STRINGENT RESPONSE JRNL TITL 2 RELATED EXOPOLYPHOSPHATASE/GUANOSINE PENTAPHOSPHATE JRNL TITL 3 PHOSPHOHYDROLASE PROTEIN FAMILY JRNL REF BIOCHEMISTRY V. 43 8894 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15248747 JRNL DOI 10.1021/BI049083C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.KURODA,K.NOMURA,R.OHTOMO,J.KATO,T.IKEDA,N.TAKIGUCHI, REMARK 1 AUTH 2 H.OHTAKE,A.KORNBERG REMARK 1 TITL ROLE OF INORGANIC POLYPHOSPHATE IN PROMOTING RIBOSOMAL REMARK 1 TITL 2 PROTEIN DEGRADATION BY THE LON PROTEASE IN E. COLI REMARK 1 REF SCIENCE V. 293 705 2001 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 11474114 REMARK 1 DOI 10.1126/SCIENCE.1061315 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.KEASLING,L.BERTSCH,A.KORNBERG REMARK 1 TITL GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE OF ESCHERICHIA REMARK 1 TITL 2 COLI IS A LONG-CHAIN EXOPOLYPHOSPHATASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 90 7029 1993 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 8394006 REMARK 1 DOI 10.1073/PNAS.90.15.7029 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.REIZER,A.REIZER,M.H.SAIER JR.,P.BORK,C.SANDER REMARK 1 TITL EXOPOLYPHOSPHATE PHOSPHATASE AND GUANOSINE PENTAPHOSPHATE REMARK 1 TITL 2 PHOSPHATASE BELONG TO THE SUGAR KINASE/ACTIN/HSP 70 REMARK 1 TITL 3 SUPERFAMILY REMARK 1 REF TRENDS BIOCHEM.SCI. V. 18 247 1993 REMARK 1 REFN ISSN 0968-0004 REMARK 1 PMID 8212131 REMARK 1 DOI 10.1016/0968-0004(93)90172-J REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 46991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2609 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2552 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3517 ; 1.494 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5955 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2728 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 503 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 549 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3004 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1677 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1533 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2519 ; 1.698 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 2.617 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 998 ; 4.485 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.993 REMARK 200 MONOCHROMATOR : BENDABLE ASYMMETRICALLY CUT REMARK 200 SI(111) CRYSTAL IN COMBINATION REMARK 200 WITH VERTICALLY FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT WITH REMARK 200 PARTIAL MODEL, FOLLOWED BY THE ARP/WARP PROCEDURE. REMARK 200 SOFTWARE USED: CNS, ARP/WARP REMARK 200 STARTING MODEL: A VERY INCOMPLETE MODEL WAS OBTAINED THROUGH REMARK 200 EXPERIMENTAL PHASING AND ARP/WARP TRACING OF THE TYPE II CRYSTAL REMARK 200 FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MES, TRIS, KCL, DTT, THE CRYSTAL REMARK 280 WAS SOAKED IN K2HGI4/KI CONTAINING SOLUTION, PH 6.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.38800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.39150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.39150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.38800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.14350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL RELEVANT UNIT IS MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 15 O HOH A 875 1.99 REMARK 500 NZ LYS A 153 O HOH A 992 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 195 OH TYR A 224 3655 1.93 REMARK 500 O HOH A 606 O HOH A 925 3745 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 265 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 165 52.03 -103.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 800 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 945 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 143 N 76.1 REMARK 620 3 GLY A 143 O 130.1 54.7 REMARK 620 4 SER A 146 O 78.5 56.8 69.0 REMARK 620 5 HOH A 689 O 91.7 74.2 83.0 131.0 REMARK 620 6 HOH A 685 O 139.2 142.9 90.6 127.4 90.7 REMARK 620 7 GLU A 148 OE1 80.8 156.3 146.7 113.7 111.7 60.7 REMARK 620 8 SER A 146 OG 118.2 115.6 81.1 65.3 149.7 63.9 71.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T6D RELATED DB: PDB REMARK 900 THE SAME PROTEIN(V82M/C138M/V306M) AT RESOLUTION 2.15 A DBREF 1T6C A 1 312 UNP O67040 O67040_AQUAE 1 312 SEQADV 1T6C GLY A -2 UNP O67040 CLONING ARTIFACT SEQADV 1T6C SER A -1 UNP O67040 CLONING ARTIFACT SEQADV 1T6C HIS A 0 UNP O67040 CLONING ARTIFACT SEQRES 1 A 315 GLY SER HIS MET SER LEU ASP ASN LYS PRO ILE MET ARG SEQRES 2 A 315 VAL ALA SER ILE ASP ILE GLY SER TYR SER VAL ARG LEU SEQRES 3 A 315 THR ILE ALA GLN ILE LYS ASP GLY LYS LEU SER ILE ILE SEQRES 4 A 315 LEU GLU ARG GLY ARG ILE THR SER LEU GLY THR LYS VAL SEQRES 5 A 315 LYS GLU THR GLY ARG LEU GLN GLU ASP ARG ILE GLU GLU SEQRES 6 A 315 THR ILE GLN VAL LEU LYS GLU TYR LYS LYS LEU ILE ASP SEQRES 7 A 315 GLU PHE LYS VAL GLU ARG VAL LYS ALA VAL ALA THR GLU SEQRES 8 A 315 ALA ILE ARG ARG ALA LYS ASN ALA GLU GLU PHE LEU GLU SEQRES 9 A 315 ARG VAL LYS ARG GLU VAL GLY LEU VAL VAL GLU VAL ILE SEQRES 10 A 315 THR PRO GLU GLN GLU GLY ARG TYR ALA TYR LEU ALA VAL SEQRES 11 A 315 ALA TYR SER LEU LYS PRO GLU GLY GLU VAL CYS VAL VAL SEQRES 12 A 315 ASP GLN GLY GLY GLY SER THR GLU TYR VAL PHE GLY LYS SEQRES 13 A 315 GLY TYR LYS VAL ARG GLU VAL ILE SER LEU PRO ILE GLY SEQRES 14 A 315 ILE VAL ASN LEU THR GLU THR PHE PHE LYS GLN ASP PRO SEQRES 15 A 315 PRO THR GLU GLU GLU VAL LYS ARG PHE PHE GLU PHE LEU SEQRES 16 A 315 GLU LYS GLU LEU SER LYS VAL LYS LYS PRO VAL ASP THR SEQRES 17 A 315 ILE VAL GLY LEU GLY GLY THR ILE THR THR LEU ALA ALA SEQRES 18 A 315 LEU GLU TYR ASN VAL TYR PRO TYR ASP PRO GLN LYS VAL SEQRES 19 A 315 HIS GLY LYS VAL LEU THR TYR GLY GLN ILE LYS LYS TRP SEQRES 20 A 315 PHE ASP THR PHE LYS GLU ILE PRO SER GLU GLU ARG SER SEQRES 21 A 315 LYS ARG PHE ARG GLN VAL GLU ASP ARG ARG ALA LYS VAL SEQRES 22 A 315 ILE LEU ALA GLY ILE GLY ILE PHE LEU LYS THR LEU GLU SEQRES 23 A 315 ILE PHE GLU LYS ASP CYS LEU ILE VAL SER ASP TRP GLY SEQRES 24 A 315 LEU ARG GLU GLY VAL LEU VAL SER GLU VAL LEU LYS GLU SEQRES 25 A 315 ASN HIS SER HET IOD A 501 1 HET CA A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET MPD A 600 8 HET MPD A 601 8 HET MPD A 602 8 HET MPD A 603 8 HET MPD A 604 8 HET MPD A 605 8 HETNAM IOD IODIDE ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 IOD I 1- FORMUL 3 CA CA 2+ FORMUL 4 CL 3(CL 1-) FORMUL 7 MPD 6(C6 H14 O2) FORMUL 13 HOH *390(H2 O) HELIX 1 1 LYS A 48 GLY A 53 1 6 HELIX 2 2 GLN A 56 PHE A 77 1 22 HELIX 3 3 THR A 87 ARG A 92 1 6 HELIX 4 4 ASN A 95 VAL A 107 1 13 HELIX 5 5 THR A 115 LEU A 131 1 17 HELIX 6 6 GLY A 166 PHE A 175 1 10 HELIX 7 7 THR A 181 SER A 197 1 17 HELIX 8 8 GLY A 210 TYR A 221 1 12 HELIX 9 9 ASP A 227 HIS A 232 1 6 HELIX 10 10 TYR A 238 LYS A 249 1 12 HELIX 11 11 PRO A 252 PHE A 260 1 9 HELIX 12 12 GLU A 264 ALA A 268 5 5 HELIX 13 13 VAL A 270 GLU A 286 1 17 HELIX 14 14 GLY A 296 HIS A 311 1 16 SHEET 1 A 5 LYS A 32 ILE A 42 0 SHEET 2 A 5 SER A 20 LYS A 29 -1 N ILE A 25 O LEU A 37 SHEET 3 A 5 MET A 9 ILE A 16 -1 N VAL A 11 O ALA A 26 SHEET 4 A 5 ARG A 81 ALA A 86 1 O VAL A 85 N ILE A 14 SHEET 5 A 5 VAL A 111 VAL A 113 1 O GLU A 112 N ALA A 84 SHEET 1 B 6 LYS A 156 LEU A 163 0 SHEET 2 B 6 SER A 146 LYS A 153 -1 N THR A 147 O LEU A 163 SHEET 3 B 6 GLU A 136 GLY A 143 -1 N VAL A 137 O GLY A 152 SHEET 4 B 6 THR A 205 LEU A 209 1 O VAL A 207 N VAL A 140 SHEET 5 B 6 CYS A 289 SER A 293 1 O ILE A 291 N GLY A 208 SHEET 6 B 6 VAL A 235 THR A 237 -1 N LEU A 236 O LEU A 290 LINK CA CA A 502 O ASP A 141 1555 1555 2.87 LINK CA CA A 502 N GLY A 143 1555 1555 3.40 LINK CA CA A 502 O GLY A 143 1555 1555 2.63 LINK CA CA A 502 O SER A 146 1555 1555 2.74 LINK CA CA A 502 O HOH A 689 1555 1555 2.76 LINK CA CA A 502 O HOH A 685 1555 1555 2.77 LINK CA CA A 502 OE1 GLU A 148 1555 1555 2.68 LINK CA CA A 502 OG SER A 146 1555 1555 3.23 CISPEP 1 ASP A 178 PRO A 179 0 2.12 CISPEP 2 TYR A 224 PRO A 225 0 -8.86 SITE 1 AC1 1 TYR A 226 SITE 1 AC2 6 ASP A 141 GLY A 143 SER A 146 GLU A 148 SITE 2 AC2 6 HOH A 685 HOH A 689 SITE 1 AC3 5 GLN A 142 GLY A 143 GLY A 145 GLY A 166 SITE 2 AC3 5 ILE A 167 SITE 1 AC4 4 GLY A 166 ASN A 169 HOH A 624 HOH A 972 SITE 1 AC5 2 GLN A 142 ARG A 267 SITE 1 AC6 4 LYS A 78 LYS A 258 HOH A 803 HOH A 975 SITE 1 AC7 2 HIS A 232 HOH A 976 SITE 1 AC8 6 GLU A 80 ARG A 81 VAL A 82 ARG A 259 SITE 2 AC8 6 MPD A 603 HOH A 695 SITE 1 AC9 6 ARG A 81 TRP A 244 THR A 247 GLU A 309 SITE 2 AC9 6 MPD A 602 HOH A 966 SITE 1 BC1 8 GLU A 136 LYS A 153 ARG A 158 TYR A 238 SITE 2 BC1 8 GLU A 283 HOH A 649 HOH A 753 HOH A 759 SITE 1 BC2 4 GLN A 118 TYR A 122 LEU A 125 SER A 304 CRYST1 50.776 70.287 90.783 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011015 0.00000 MASTER 426 0 11 14 11 0 16 6 0 0 0 25 END