HEADER VIRAL PROTEIN 29-MAR-04 1SVL TITLE CO-CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN HELICASE TITLE 2 DOMAIN AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HELICASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40; SOURCE 3 ORGANISM_TAXID: 10633; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AAA+ FOLD, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GAI,R.ZHAO,C.V.FINKIELSTEIN,X.S.CHEN REVDAT 2 24-FEB-09 1SVL 1 VERSN REVDAT 1 19-OCT-04 1SVL 0 JRNL AUTH D.GAI,R.ZHAO,D.LI,C.V.FINKIELSTEIN,X.S.CHEN JRNL TITL MECHANISMS OF CONFORMATIONAL CHANGE FOR A JRNL TITL 2 REPLICATIVE HEXAMERIC HELICASE OF SV40 LARGE TUMOR JRNL TITL 3 ANTIGEN. JRNL REF CELL(CAMBRIDGE,MASS.) V. 119 47 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15454080 JRNL DOI 10.1016/J.CELL.2004.09.017 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 87648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9680 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3998 REMARK 3 BIN FREE R VALUE : 0.3919 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SVL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB022031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM CHLORIDE, PEG 8000, REMARK 280 DTT, PH 7.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.90600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.22100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.90600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.22100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL HEXAMER IS GENERATED FROM 2 ASU RELATED REMARK 300 BY CRYSTALLGRAPHIC 2-FOLD AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.88077 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.94175 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 251 REMARK 465 LEU A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 HIS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 GLU A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 LYS B 253 REMARK 465 GLU B 254 REMARK 465 HIS B 255 REMARK 465 ASP B 256 REMARK 465 PHE B 257 REMARK 465 ASN B 258 REMARK 465 PRO B 259 REMARK 465 GLU B 260 REMARK 465 GLU B 261 REMARK 465 ALA B 262 REMARK 465 GLU B 263 REMARK 465 GLU B 264 REMARK 465 THR B 265 REMARK 465 GLY C 251 REMARK 465 LEU C 252 REMARK 465 LYS C 253 REMARK 465 GLU C 254 REMARK 465 HIS C 255 REMARK 465 ASP C 256 REMARK 465 PHE C 257 REMARK 465 ASN C 258 REMARK 465 PRO C 259 REMARK 465 GLU C 260 REMARK 465 GLU C 261 REMARK 465 ALA C 262 REMARK 465 GLU C 263 REMARK 465 GLU C 264 REMARK 465 THR C 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 313 -66.91 -104.85 REMARK 500 LYS A 418 -6.17 71.42 REMARK 500 ARG A 456 -9.87 -177.19 REMARK 500 GLU A 481 4.77 -66.24 REMARK 500 ARG A 483 31.93 -74.05 REMARK 500 LYS A 511 109.98 -162.99 REMARK 500 LYS A 512 56.02 85.68 REMARK 500 LEU A 514 136.55 179.96 REMARK 500 ASN A 515 79.00 -69.87 REMARK 500 ARG A 517 139.83 -175.95 REMARK 500 ASN A 529 -161.72 -77.26 REMARK 500 SER A 560 54.00 -140.60 REMARK 500 VAL A 625 -76.59 32.24 REMARK 500 SER B 381 -50.21 177.55 REMARK 500 LYS B 418 -0.49 67.40 REMARK 500 LEU B 454 24.03 -67.63 REMARK 500 ARG B 456 -9.57 -150.39 REMARK 500 ASP B 466 -1.73 71.01 REMARK 500 ASP B 474 73.21 46.26 REMARK 500 THR B 478 -10.95 -152.70 REMARK 500 ARG B 483 42.64 -106.22 REMARK 500 PRO B 486 176.15 -51.80 REMARK 500 LYS B 512 -158.05 66.05 REMARK 500 ASN B 515 147.18 -177.66 REMARK 500 ARG B 517 139.08 -171.68 REMARK 500 GLU B 530 75.61 18.97 REMARK 500 TYR B 531 -153.03 -103.10 REMARK 500 LYS C 308 56.21 37.46 REMARK 500 HIS C 313 -69.69 -103.64 REMARK 500 LYS C 418 -10.17 73.55 REMARK 500 ASP C 455 -80.88 -73.95 REMARK 500 ARG C 456 18.79 -69.07 REMARK 500 ASP C 466 13.95 57.59 REMARK 500 ASP C 484 67.06 66.65 REMARK 500 LEU C 514 120.32 -178.16 REMARK 500 ASN C 515 97.05 -58.06 REMARK 500 GLU C 530 38.41 90.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 CYS A 302 SG 102.5 REMARK 620 3 HIS A 317 ND1 107.2 105.5 REMARK 620 4 CYS A 305 SG 111.2 120.9 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 229 O REMARK 620 2 THR A 433 OG1 84.6 REMARK 620 3 HOH A 165 O 91.6 87.8 REMARK 620 4 HOH A 227 O 101.2 170.6 99.4 REMARK 620 5 ADP A 800 O2B 82.1 81.3 167.8 92.2 REMARK 620 6 HOH A 230 O 169.1 85.0 84.7 89.5 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 313 NE2 REMARK 620 2 CYS B 302 SG 104.4 REMARK 620 3 CYS B 305 SG 108.4 123.2 REMARK 620 4 HIS B 317 ND1 105.7 103.0 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 224 O REMARK 620 2 THR B 433 OG1 157.7 REMARK 620 3 ADP B 800 O2B 94.7 85.4 REMARK 620 4 HOH B 222 O 105.2 96.9 95.7 REMARK 620 5 HOH B 223 O 82.8 75.2 80.8 171.5 REMARK 620 6 HOH C 125 O 86.4 88.0 165.4 98.0 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 302 SG REMARK 620 2 HIS C 313 NE2 104.0 REMARK 620 3 CYS C 305 SG 117.9 112.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP C 800 O2B REMARK 620 2 HOH C 216 O 97.3 REMARK 620 3 HOH C 217 O 84.2 83.7 REMARK 620 4 HOH C 218 O 102.5 104.9 168.0 REMARK 620 5 HOH C 48 O 161.5 91.9 80.9 90.4 REMARK 620 6 THR C 433 OG1 85.6 158.1 74.9 95.6 80.0 REMARK 620 7 ARG A 498 NH2 104.9 49.5 132.8 55.5 93.2 150.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 700 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 700 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 700 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 750 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 750 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 750 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SVM RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 1SVO RELATED DB: PDB REMARK 900 SAME PROTEIN DBREF 1SVL A 251 627 UNP P03070 TALA_SV40 251 627 DBREF 1SVL B 251 627 UNP P03070 TALA_SV40 251 627 DBREF 1SVL C 251 627 UNP P03070 TALA_SV40 251 627 SEQRES 1 A 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 A 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 A 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 A 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 A 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 A 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 A 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 A 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 A 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 A 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 A 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 A 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 A 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 A 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 A 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 A 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 A 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 A 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 A 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 A 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 A 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 A 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 A 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 A 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 A 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 A 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 A 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 A 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 A 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP SEQRES 1 B 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 B 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 B 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 B 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 B 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 B 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 B 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 B 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 B 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 B 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 B 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 B 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 B 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 B 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 B 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 B 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 B 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 B 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 B 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 B 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 B 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 B 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 B 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 B 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 B 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 B 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 B 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 B 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 B 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP SEQRES 1 C 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 C 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 C 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 C 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 C 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 C 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 C 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 C 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 C 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 C 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 C 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 C 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 C 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 C 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 C 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 C 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 C 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 C 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 C 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 C 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 C 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 C 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 C 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 C 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 C 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 C 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 C 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 C 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 C 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP HET ZN A 700 1 HET ZN B 700 1 HET ZN C 700 1 HET MG A 750 1 HET MG B 750 1 HET MG C 750 1 HET ADP A 800 27 HET ADP B 800 27 HET ADP C 800 27 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ZN 3(ZN 2+) FORMUL 7 MG 3(MG 2+) FORMUL 10 ADP 3(C10 H15 N5 O10 P2) FORMUL 13 HOH *231(H2 O) HELIX 1 1 SER A 269 LYS A 281 1 13 HELIX 2 2 ASP A 284 GLU A 294 1 11 HELIX 3 3 CYS A 302 LYS A 307 1 6 HELIX 4 4 GLN A 310 LYS A 315 1 6 HELIX 5 5 TYR A 316 ALA A 328 1 13 HELIX 6 6 ASN A 332 LEU A 355 1 24 HELIX 7 7 THR A 356 PHE A 376 1 21 HELIX 8 8 ASP A 383 HIS A 395 1 13 HELIX 9 9 LYS A 400 ASN A 415 1 16 HELIX 10 10 GLY A 431 GLY A 444 1 14 HELIX 11 11 ARG A 456 GLY A 462 1 7 HELIX 12 12 VAL A 463 ILE A 465 5 3 HELIX 13 13 GLY A 480 ASP A 484 5 5 HELIX 14 14 GLN A 489 ASP A 495 1 7 HELIX 15 15 LEU A 497 GLY A 503 1 7 HELIX 16 16 PRO A 534 ALA A 539 1 6 HELIX 17 17 LYS A 550 ARG A 559 1 10 HELIX 18 18 GLU A 561 LYS A 566 1 6 HELIX 19 19 SER A 571 ARG A 583 1 13 HELIX 20 20 PRO A 584 PHE A 588 5 5 HELIX 21 21 ILE A 592 PHE A 607 1 16 HELIX 22 22 SER A 608 GLY A 622 1 15 HELIX 23 23 SER B 269 LYS B 281 1 13 HELIX 24 24 ASP B 284 GLU B 294 1 11 HELIX 25 25 PHE B 295 TYR B 297 5 3 HELIX 26 26 CYS B 302 LYS B 307 1 6 HELIX 27 27 GLN B 310 LYS B 315 1 6 HELIX 28 28 TYR B 316 ALA B 328 1 13 HELIX 29 29 ASN B 332 LEU B 355 1 24 HELIX 30 30 THR B 356 PHE B 376 1 21 HELIX 31 31 ASP B 383 HIS B 395 1 13 HELIX 32 32 LYS B 400 ASN B 415 1 16 HELIX 33 33 GLY B 431 GLY B 444 1 14 HELIX 34 34 ARG B 456 GLY B 462 1 7 HELIX 35 35 VAL B 463 ILE B 465 5 3 HELIX 36 36 LEU B 497 GLY B 503 1 7 HELIX 37 37 LYS B 512 LEU B 514 5 3 HELIX 38 38 PRO B 534 ALA B 539 1 6 HELIX 39 39 LYS B 550 ARG B 559 1 10 HELIX 40 40 GLU B 561 LYS B 566 1 6 HELIX 41 41 SER B 571 ARG B 583 1 13 HELIX 42 42 PRO B 584 PHE B 588 5 5 HELIX 43 43 ALA B 589 PHE B 607 1 19 HELIX 44 44 SER B 608 GLY B 622 1 15 HELIX 45 45 SER C 269 THR C 280 1 12 HELIX 46 46 ASP C 284 GLU C 294 1 11 HELIX 47 47 PHE C 295 TYR C 297 5 3 HELIX 48 48 CYS C 302 LYS C 307 1 6 HELIX 49 49 GLN C 310 LYS C 315 1 6 HELIX 50 50 TYR C 316 ALA C 328 1 13 HELIX 51 51 ASN C 332 LEU C 355 1 24 HELIX 52 52 THR C 356 PHE C 376 1 21 HELIX 53 53 ASP C 383 CYS C 396 1 14 HELIX 54 54 LYS C 400 ASN C 415 1 16 HELIX 55 55 GLY C 431 GLY C 444 1 14 HELIX 56 56 ARG C 456 GLY C 462 1 7 HELIX 57 57 VAL C 463 ILE C 465 5 3 HELIX 58 58 GLY C 479 ASP C 484 5 6 HELIX 59 59 GLN C 489 ASN C 496 1 8 HELIX 60 60 LEU C 497 GLY C 503 1 7 HELIX 61 61 PRO C 534 ALA C 539 1 6 HELIX 62 62 LYS C 550 ARG C 559 1 10 HELIX 63 63 GLU C 561 LYS C 566 1 6 HELIX 64 64 SER C 571 ARG C 583 1 13 HELIX 65 65 PRO C 584 PHE C 588 5 5 HELIX 66 66 ALA C 589 PHE C 607 1 19 HELIX 67 67 SER C 608 MET C 621 1 14 SHEET 1 A 5 LYS A 446 LEU A 448 0 SHEET 2 A 5 VAL A 470 PHE A 472 1 O VAL A 471 N LEU A 448 SHEET 3 A 5 GLY A 524 MET A 528 1 O ILE A 525 N PHE A 472 SHEET 4 A 5 TYR A 421 LYS A 425 1 N PHE A 424 O VAL A 526 SHEET 5 A 5 LYS A 543 ASP A 546 1 O ILE A 545 N LEU A 423 SHEET 1 B 2 VAL A 507 LEU A 509 0 SHEET 2 B 2 ARG A 517 GLN A 519 -1 O GLN A 519 N VAL A 507 SHEET 1 C 5 LYS B 446 LEU B 448 0 SHEET 2 C 5 VAL B 470 PHE B 472 1 O VAL B 471 N LEU B 448 SHEET 3 C 5 GLY B 524 MET B 528 1 O ILE B 525 N PHE B 472 SHEET 4 C 5 TYR B 421 LYS B 425 1 N PHE B 424 O VAL B 526 SHEET 5 C 5 PHE B 541 ASP B 546 1 O ILE B 545 N LEU B 423 SHEET 1 D 2 VAL B 507 GLU B 510 0 SHEET 2 D 2 LYS B 516 GLN B 519 -1 O GLN B 519 N VAL B 507 SHEET 1 E 5 LYS C 446 LEU C 448 0 SHEET 2 E 5 VAL C 470 PHE C 472 1 O VAL C 471 N LEU C 448 SHEET 3 E 5 GLY C 524 MET C 528 1 O ILE C 525 N PHE C 472 SHEET 4 E 5 TYR C 421 LYS C 425 1 N PHE C 424 O VAL C 526 SHEET 5 E 5 LYS C 543 ASP C 546 1 O ILE C 545 N LEU C 423 SHEET 1 F 2 VAL C 507 LEU C 509 0 SHEET 2 F 2 ARG C 517 GLN C 519 -1 O GLN C 519 N VAL C 507 LINK ZN ZN A 700 NE2 HIS A 313 1555 1555 2.20 LINK ZN ZN A 700 SG CYS A 302 1555 1555 2.31 LINK ZN ZN A 700 ND1 HIS A 317 1555 1555 1.96 LINK ZN ZN A 700 SG CYS A 305 1555 1555 2.24 LINK MG MG A 750 O HOH A 229 1555 1555 2.20 LINK MG MG A 750 OG1 THR A 433 1555 1555 2.31 LINK MG MG A 750 O HOH A 165 1555 1555 2.26 LINK MG MG A 750 O HOH A 227 1555 1555 1.98 LINK MG MG A 750 O2B ADP A 800 1555 1555 2.04 LINK MG MG A 750 O HOH A 230 1555 1555 2.14 LINK ZN ZN B 700 NE2 HIS B 313 1555 1555 2.28 LINK ZN ZN B 700 SG CYS B 302 1555 1555 2.17 LINK ZN ZN B 700 SG CYS B 305 1555 1555 2.02 LINK ZN ZN B 700 ND1 HIS B 317 1555 1555 2.18 LINK MG MG B 750 O HOH B 224 1555 1555 2.05 LINK MG MG B 750 OG1 THR B 433 1555 1555 2.04 LINK MG MG B 750 O2B ADP B 800 1555 1555 2.14 LINK MG MG B 750 O HOH B 222 1555 1555 2.04 LINK MG MG B 750 O HOH B 223 1555 1555 2.41 LINK MG MG B 750 O HOH C 125 1555 1555 2.19 LINK ZN ZN C 700 SG CYS C 302 1555 1555 1.93 LINK ZN ZN C 700 NE2 HIS C 313 1555 1555 2.30 LINK ZN ZN C 700 SG CYS C 305 1555 1555 2.39 LINK MG MG C 750 O2B ADP C 800 1555 1555 2.10 LINK MG MG C 750 O HOH C 216 1555 1555 2.19 LINK MG MG C 750 O HOH C 217 1555 1555 2.35 LINK MG MG C 750 O HOH C 218 1555 1555 2.13 LINK MG MG C 750 O HOH C 48 1555 1555 2.42 LINK MG MG C 750 OG1 THR C 433 1555 1555 2.13 LINK MG MG C 750 NH2 ARG A 498 1555 2656 3.09 SITE 1 AC1 4 CYS A 302 CYS A 305 HIS A 313 HIS A 317 SITE 1 AC2 4 CYS B 302 CYS B 305 HIS B 313 HIS B 317 SITE 1 AC3 4 CYS C 302 CYS C 305 HIS C 313 HIS C 317 SITE 1 AC4 7 HOH A 165 HOH A 227 HOH A 229 HOH A 230 SITE 2 AC4 7 THR A 433 GLU A 473 ADP A 800 SITE 1 AC5 6 HOH B 222 HOH B 223 HOH B 224 THR B 433 SITE 2 AC5 6 ADP B 800 HOH C 125 SITE 1 AC6 7 ARG A 498 HOH C 48 HOH C 216 HOH C 217 SITE 2 AC6 7 HOH C 218 THR C 433 ADP C 800 SITE 1 AC7 17 HOH A 227 HOH A 229 ILE A 428 ASP A 429 SITE 2 AC7 17 SER A 430 GLY A 431 LYS A 432 THR A 433 SITE 3 AC7 17 THR A 434 ARG A 548 PRO A 549 LYS A 550 SITE 4 AC7 17 LEU A 553 LEU A 557 LEU A 564 MG A 750 SITE 5 AC7 17 LYS B 418 SITE 1 AC8 21 HOH B 220 HOH B 222 HOH B 223 HOH B 224 SITE 2 AC8 21 LEU B 397 ILE B 428 ASP B 429 SER B 430 SITE 3 AC8 21 GLY B 431 LYS B 432 THR B 433 THR B 434 SITE 4 AC8 21 ARG B 548 PRO B 549 LYS B 550 LEU B 553 SITE 5 AC8 21 LEU B 557 LEU B 564 MG B 750 LYS C 418 SITE 6 AC8 21 ARG C 498 SITE 1 AC9 22 LYS A 418 ARG A 498 HOH C 33 HOH C 54 SITE 2 AC9 22 HOH C 216 HOH C 217 HOH C 218 LEU C 397 SITE 3 AC9 22 PRO C 427 ILE C 428 ASP C 429 SER C 430 SITE 4 AC9 22 GLY C 431 LYS C 432 THR C 433 THR C 434 SITE 5 AC9 22 ARG C 548 PRO C 549 LYS C 550 LEU C 553 SITE 6 AC9 22 LEU C 557 MG C 750 CRYST1 195.812 86.442 128.601 90.00 129.00 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005107 0.000000 0.004136 0.00000 SCALE2 0.000000 0.011568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010006 0.00000 MASTER 425 0 9 67 21 0 26 6 0 0 0 87 END