HEADER HYDROLASE 26-MAR-04 1SU2 TITLE CRYSTAL STRUCTURE OF THE NUDIX HYDROLASE DR1025 IN COMPLEX TITLE 2 WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUDIX HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR1025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS NUDIX FOLD, ALPHA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, KEYWDS 2 BSGC STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, BERKELEY STRUCTURAL GENOMICS CENTER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.RANATUNGA,E.E.HILL,J.L.MOOSTER,E.L.HOLBROOK,U.SCHULZE- AUTHOR 2 GAHMEN,W.XU,M.J.BESSMAN,S.E.BRENNER,S.R.HOLBROOK,BERKELEY AUTHOR 3 STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 4 24-FEB-09 1SU2 1 VERSN REVDAT 3 08-MAR-05 1SU2 1 AUTHOR KEYWDS REMARK REVDAT 2 24-AUG-04 1SU2 1 KEYWDS REVDAT 1 11-MAY-04 1SU2 0 JRNL AUTH W.RANATUNGA,E.E.HILL,J.L.MOOSTER,E.L.HOLBROOK, JRNL AUTH 2 U.SCHULZE-GAHMEN,W.XU,M.J.BESSMAN,S.E.BRENNER, JRNL AUTH 3 S.R.HOLBROOK JRNL TITL STRUCTURAL STUDIES OF THE NUDIX HYDROLASE DR1025 JRNL TITL 2 FROM DEINOCOCCUS RADIODURANS AND ITS LIGAND JRNL TITL 3 COMPLEXES. JRNL REF J.MOL.BIOL. V. 339 103 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15123424 JRNL DOI 10.1016/J.JMB.2004.01.065 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1734.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 44109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4454 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3857 REMARK 3 BIN R VALUE (WORKING SET) : 0.2025 REMARK 3 BIN FREE R VALUE : 0.2328 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 440 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 1.81900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.03 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.06 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 2.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.06 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.50 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.418 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.356 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.091 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.001 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 50.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SU2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB021990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 45.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM FORMATE, PH REMARK 280 4.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.18100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.59050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.77150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT OF THE CRYSTAL STRUCTURE AND THE REMARK 300 BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 36 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO A 39 CA - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO A 48 CA - N - CD ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO A 58 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 PRO A 155 CA - N - CD ANGL. DEV. = -9.4 DEGREES REMARK 500 LEU A 157 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 PRO A 158 CA - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO B 36 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO B 39 CA - N - CD ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO B 158 CA - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 150.99 153.49 REMARK 500 PRO A 39 82.34 -36.42 REMARK 500 GLU A 40 116.84 165.78 REMARK 500 PRO A 48 101.98 -58.08 REMARK 500 GLU A 118 -177.97 -178.73 REMARK 500 PRO A 158 3.49 -65.62 REMARK 500 GLU B 2 152.51 46.26 REMARK 500 HIS B 3 54.91 -64.90 REMARK 500 PRO B 36 77.08 -52.03 REMARK 500 HIS B 38 -140.60 -61.18 REMARK 500 PRO B 39 -156.52 -35.92 REMARK 500 LYS B 41 -103.48 1.18 REMARK 500 ALA B 42 78.30 95.51 REMARK 500 GLU B 118 -178.51 -177.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 75 0.21 SIDE_CHAIN REMARK 500 ARG B 14 0.20 SIDE_CHAIN REMARK 500 ARG B 73 0.25 SIDE_CHAIN REMARK 500 ARG B 75 0.25 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 357 O2A REMARK 620 2 HOH A 720 O 160.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 49 OG REMARK 620 2 ARG A 95 NH1 77.9 REMARK 620 3 ATP A 357 O1B 113.6 79.6 REMARK 620 4 ATP A 357 O2B 175.5 99.1 68.8 REMARK 620 5 MET B 1 SD 105.3 129.2 136.2 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 816 O REMARK 620 2 HOH A 889 O 89.7 REMARK 620 3 HOH A 771 O 101.6 168.6 REMARK 620 4 HOH A 827 O 156.3 83.0 86.7 REMARK 620 5 GLU A 65 OE2 81.4 83.0 99.1 75.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 257 O1B REMARK 620 2 ARG B 95 NH1 118.9 REMARK 620 3 MET A 1 N 142.8 55.8 REMARK 620 4 SER B 49 OG 111.5 81.7 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 713 O REMARK 620 2 ATP B 257 O2A 157.1 REMARK 620 3 ATP B 257 O1A 140.6 61.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 853 O REMARK 620 2 HOH B 980 O 84.5 REMARK 620 3 HOH B 764 O 102.9 170.8 REMARK 620 4 HOH B 782 O 88.6 79.1 95.5 REMARK 620 5 HOH B 871 O 155.1 91.1 84.4 114.7 REMARK 620 6 GLU B 65 OE2 77.7 87.6 99.2 161.7 77.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 203 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 204 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 205 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 206 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 257 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 357 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR30561 RELATED DB: TARGETDB DBREF 1SU2 A 1 159 UNP Q9RVK2 Q9RVK2_DEIRA 1 159 DBREF 1SU2 B 1 159 UNP Q9RVK2 Q9RVK2_DEIRA 1 159 SEQRES 1 A 159 MET GLU HIS ASP GLU ARG THR HIS VAL PRO VAL GLU LEU SEQRES 2 A 159 ARG ALA ALA GLY VAL VAL LEU LEU ASN GLU ARG GLY ASP SEQRES 3 A 159 ILE LEU LEU VAL GLN GLU LYS GLY ILE PRO GLY HIS PRO SEQRES 4 A 159 GLU LYS ALA GLY LEU TRP HIS ILE PRO SER GLY ALA VAL SEQRES 5 A 159 GLU ASP GLY GLU ASN PRO GLN ASP ALA ALA VAL ARG GLU SEQRES 6 A 159 ALA CYS GLU GLU THR GLY LEU ARG VAL ARG PRO VAL LYS SEQRES 7 A 159 PHE LEU GLY ALA TYR LEU GLY ARG PHE PRO ASP GLY VAL SEQRES 8 A 159 LEU ILE LEU ARG HIS VAL TRP LEU ALA GLU PRO GLU PRO SEQRES 9 A 159 GLY GLN THR LEU ALA PRO ALA PHE THR ASP GLU ILE ALA SEQRES 10 A 159 GLU ALA SER PHE VAL SER ARG GLU ASP PHE ALA GLN LEU SEQRES 11 A 159 TYR ALA ALA GLY GLN ILE ARG MET TYR GLN THR LYS LEU SEQRES 12 A 159 PHE TYR ALA ASP ALA LEU ARG GLU LYS GLY PHE PRO ALA SEQRES 13 A 159 LEU PRO VAL SEQRES 1 B 159 MET GLU HIS ASP GLU ARG THR HIS VAL PRO VAL GLU LEU SEQRES 2 B 159 ARG ALA ALA GLY VAL VAL LEU LEU ASN GLU ARG GLY ASP SEQRES 3 B 159 ILE LEU LEU VAL GLN GLU LYS GLY ILE PRO GLY HIS PRO SEQRES 4 B 159 GLU LYS ALA GLY LEU TRP HIS ILE PRO SER GLY ALA VAL SEQRES 5 B 159 GLU ASP GLY GLU ASN PRO GLN ASP ALA ALA VAL ARG GLU SEQRES 6 B 159 ALA CYS GLU GLU THR GLY LEU ARG VAL ARG PRO VAL LYS SEQRES 7 B 159 PHE LEU GLY ALA TYR LEU GLY ARG PHE PRO ASP GLY VAL SEQRES 8 B 159 LEU ILE LEU ARG HIS VAL TRP LEU ALA GLU PRO GLU PRO SEQRES 9 B 159 GLY GLN THR LEU ALA PRO ALA PHE THR ASP GLU ILE ALA SEQRES 10 B 159 GLU ALA SER PHE VAL SER ARG GLU ASP PHE ALA GLN LEU SEQRES 11 B 159 TYR ALA ALA GLY GLN ILE ARG MET TYR GLN THR LYS LEU SEQRES 12 B 159 PHE TYR ALA ASP ALA LEU ARG GLU LYS GLY PHE PRO ALA SEQRES 13 B 159 LEU PRO VAL HET MG A 201 1 HET MG B 202 1 HET MG B 203 1 HET MG A 204 1 HET MG A 205 1 HET MG B 206 1 HET ATP B 257 31 HET ATP A 357 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 6(MG 2+) FORMUL 9 ATP 2(C10 H16 N5 O13 P3) FORMUL 11 HOH *296(H2 O) HELIX 1 1 ASN A 57 GLY A 71 1 15 HELIX 2 2 SER A 123 ALA A 133 1 11 HELIX 3 3 TYR A 139 GLY A 153 1 15 HELIX 4 4 ASN B 57 GLY B 71 1 15 HELIX 5 5 SER B 123 ALA B 133 1 11 HELIX 6 6 TYR B 139 GLY B 153 1 15 SHEET 1 A 5 THR A 7 HIS A 8 0 SHEET 2 A 5 VAL B 74 ARG B 86 -1 O ARG B 86 N THR A 7 SHEET 3 A 5 LEU B 92 PRO B 102 -1 O LEU B 99 N LYS B 78 SHEET 4 A 5 LEU B 13 LEU B 20 1 N VAL B 19 O TRP B 98 SHEET 5 A 5 SER B 49 ALA B 51 -1 O GLY B 50 N ALA B 16 SHEET 1 B 5 SER A 49 ALA A 51 0 SHEET 2 B 5 LEU A 13 LEU A 20 -1 N ALA A 16 O GLY A 50 SHEET 3 B 5 LEU A 92 PRO A 102 1 O TRP A 98 N VAL A 19 SHEET 4 B 5 VAL A 74 ARG A 86 -1 N LYS A 78 O LEU A 99 SHEET 5 B 5 THR B 7 HIS B 8 -1 O THR B 7 N ARG A 86 SHEET 1 C 3 TRP A 45 HIS A 46 0 SHEET 2 C 3 ILE A 27 GLU A 32 -1 N VAL A 30 O HIS A 46 SHEET 3 C 3 ILE A 116 VAL A 122 -1 O GLU A 118 N GLN A 31 SHEET 1 D 3 TRP B 45 HIS B 46 0 SHEET 2 D 3 ILE B 27 GLU B 32 -1 N VAL B 30 O HIS B 46 SHEET 3 D 3 ILE B 116 VAL B 122 -1 O GLU B 118 N GLN B 31 LINK MG MG A 201 O2A ATP A 357 1555 1555 1.91 LINK MG MG A 204 OG SER A 49 1555 1555 2.35 LINK MG MG A 204 NH1 ARG A 95 1555 1555 3.12 LINK MG MG A 204 O1B ATP A 357 1555 1555 2.38 LINK MG MG A 204 O2B ATP A 357 1555 1555 2.06 LINK MG MG A 204 SD MET B 1 1555 1555 2.90 LINK MG MG A 205 O HOH A 816 1555 1555 2.44 LINK MG MG A 205 O HOH A 889 1555 1555 2.50 LINK MG MG A 205 O HOH A 771 1555 1555 2.49 LINK MG MG A 205 O HOH A 827 1555 1555 2.65 LINK MG MG A 205 OE2 GLU A 65 1555 1555 2.62 LINK MG MG B 202 O1B ATP B 257 1555 1555 2.18 LINK MG MG B 202 NH1 ARG B 95 1555 1555 3.11 LINK MG MG B 202 N MET A 1 1555 1555 2.09 LINK MG MG B 202 OG SER B 49 1555 1555 2.69 LINK MG MG B 203 O HOH B 713 1555 1555 2.80 LINK MG MG B 203 O2A ATP B 257 1555 1555 1.87 LINK MG MG B 203 O1A ATP B 257 1555 1555 2.77 LINK MG MG B 206 O HOH B 853 1555 1555 2.45 LINK MG MG B 206 O HOH B 980 1555 1555 2.63 LINK MG MG B 206 O HOH B 764 1555 1555 2.56 LINK MG MG B 206 O HOH B 782 1555 1555 2.70 LINK MG MG B 206 O HOH B 871 1555 1555 2.81 LINK MG MG B 206 OE2 GLU B 65 1555 1555 2.58 LINK MG MG A 201 O HOH A 720 1555 4664 2.83 SITE 1 AC1 5 LEU A 13 ARG A 14 ALA A 51 ATP A 357 SITE 2 AC1 5 HOH A 720 SITE 1 AC2 5 MET A 1 SER B 49 GLY B 50 ARG B 95 SITE 2 AC2 5 ATP B 257 SITE 1 AC3 5 LEU B 13 ARG B 14 ALA B 51 ATP B 257 SITE 2 AC3 5 HOH B 713 SITE 1 AC4 5 SER A 49 GLY A 50 ARG A 95 ATP A 357 SITE 2 AC4 5 MET B 1 SITE 1 AC5 5 GLU A 65 HOH A 771 HOH A 816 HOH A 827 SITE 2 AC5 5 HOH A 889 SITE 1 AC6 6 GLU B 65 HOH B 764 HOH B 782 HOH B 853 SITE 2 AC6 6 HOH B 871 HOH B 980 SITE 1 AC7 15 MET A 1 GLU A 2 ASP A 4 ARG A 6 SITE 2 AC7 15 LEU B 13 ALA B 15 GLY B 50 ALA B 51 SITE 3 AC7 15 PHE B 87 ASP B 89 VAL B 91 ILE B 93 SITE 4 AC7 15 MG B 202 MG B 203 HOH B 791 SITE 1 AC8 16 LEU A 13 ALA A 15 ALA A 51 PHE A 87 SITE 2 AC8 16 ASP A 89 VAL A 91 ILE A 93 ARG A 95 SITE 3 AC8 16 MG A 201 MG A 204 HOH A 793 HOH A 996 SITE 4 AC8 16 MET B 1 GLU B 2 ASP B 4 ARG B 6 CRYST1 53.232 53.232 122.362 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008172 0.00000 MASTER 388 0 8 6 16 0 20 6 0 0 0 26 END