HEADER RNA BINDING PROTEIN 24-MAR-04 1ST4 TITLE STRUCTURE OF DCPS BOUND TO M7GPPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA DECAPPING ENZYME; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CP RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3(PET28B) KEYWDS RNA DECAY, EXOSOME, DECAPPING, HIT PROTEIN, MESSENGER RNA, MRNA, CAP, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GU,C.FABREGA,S.W.LIU,H.LIU,M.KILEDJIAN,C.D.LIMA REVDAT 3 27-OCT-21 1ST4 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ST4 1 VERSN REVDAT 1 13-APR-04 1ST4 0 JRNL AUTH M.GU,C.FABREGA,S.W.LIU,H.LIU,M.KILEDJIAN,C.D.LIMA JRNL TITL INSIGHTS INTO THE STRUCTURE, MECHANISM, AND REGULATION OF JRNL TITL 2 SCAVENGER MRNA DECAPPING ACTIVITY JRNL REF MOL.CELL V. 14 67 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15068804 JRNL DOI 10.1016/S1097-2765(04)00180-7 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 64761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ST4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1ST0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH5; 10MM YCL3, REMARK 280 10% PEG 8000; 2MM M7GPPPA; 10MM MGCL2 , PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.01850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.99050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.99050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.01850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 7 REMARK 465 LEU B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 ARG B 11 REMARK 465 LYS B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 LEU B 15 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 GLU B 18 REMARK 465 GLU B 19 REMARK 465 ALA B 20 REMARK 465 HIS B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 LYS B 28 REMARK 465 GLU B 29 REMARK 465 ALA B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 32 REMARK 465 GLY B 33 REMARK 465 ASN B 34 REMARK 465 GLY B 35 REMARK 465 THR B 36 REMARK 465 CYS B 37 REMARK 465 ALA B 38 REMARK 465 PRO B 39 REMARK 465 SER B 337 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 ARG A 11 REMARK 465 LYS A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 VAL A 32 REMARK 465 GLY A 33 REMARK 465 ASN A 34 REMARK 465 GLY A 35 REMARK 465 THR A 36 REMARK 465 CYS A 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 54 O HOH A 730 2.15 REMARK 500 O HOH B 585 O HOH B 614 2.15 REMARK 500 NH2 ARG B 322 O HOH B 619 2.15 REMARK 500 O HOH B 472 O HOH B 614 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 554 O HOH B 572 4566 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 116 CG TYR B 116 CD2 0.088 REMARK 500 TYR B 116 CD1 TYR B 116 CE1 -0.099 REMARK 500 PHE A 44 CE1 PHE A 44 CZ 0.128 REMARK 500 PHE A 63 CE1 PHE A 63 CZ 0.122 REMARK 500 PHE A 89 CD1 PHE A 89 CE1 0.135 REMARK 500 GLN A 141 CG GLN A 141 CD 0.139 REMARK 500 TYR A 177 CD1 TYR A 177 CE1 0.113 REMARK 500 ALA A 186 CA ALA A 186 CB 0.129 REMARK 500 LYS A 207 CD LYS A 207 CE 0.161 REMARK 500 LYS A 207 CE LYS A 207 NZ 0.240 REMARK 500 TYR A 217 CG TYR A 217 CD2 0.113 REMARK 500 GLU A 250 CD GLU A 250 OE1 0.072 REMARK 500 PHE A 280 CD1 PHE A 280 CE1 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 48 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 58 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 84 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 ASP B 126 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 187 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 255 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 261 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 261 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP B 324 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 LEU A 53 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 98 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 ILE A 203 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ASP A 214 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 231 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 43 3.87 -63.73 REMARK 500 SER B 101 75.68 41.74 REMARK 500 ASP B 111 -129.63 55.51 REMARK 500 ILE B 161 -59.91 -128.38 REMARK 500 LYS B 182 -4.34 76.14 REMARK 500 ASP B 187 1.66 -65.69 REMARK 500 ASP B 195 107.55 -44.59 REMARK 500 PHE B 200 159.74 177.66 REMARK 500 GLN B 210 10.90 57.00 REMARK 500 LEU B 230 -37.20 -33.14 REMARK 500 ARG B 257 30.83 80.30 REMARK 500 TYR B 274 47.81 -83.99 REMARK 500 LEU B 276 126.83 -31.35 REMARK 500 ASP B 308 75.82 -151.59 REMARK 500 HIS B 311 -67.60 -13.53 REMARK 500 LYS A 51 133.65 -170.04 REMARK 500 ASN A 110 111.30 -164.71 REMARK 500 ASP A 111 -100.30 61.70 REMARK 500 SER A 114 145.80 -177.98 REMARK 500 ARG A 122 -50.15 -28.88 REMARK 500 ARG A 145 77.85 7.88 REMARK 500 GLN A 146 101.78 -46.26 REMARK 500 ILE A 161 -57.43 -123.19 REMARK 500 SER A 172 128.30 -38.09 REMARK 500 LEU A 216 124.48 -39.22 REMARK 500 SER A 229 174.76 177.19 REMARK 500 LEU A 276 131.85 -39.00 REMARK 500 ARG A 294 -32.40 -143.15 REMARK 500 ASP A 308 69.14 -167.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTA A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTA B 452 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ST0 RELATED DB: PDB REMARK 900 STRUCTURE OF DCPS BOUND TO M7GPPPG DBREF 1ST4 A 1 337 UNP Q96C86 DCPS_HUMAN 1 337 DBREF 1ST4 B 1 337 UNP Q96C86 DCPS_HUMAN 1 337 SEQADV 1ST4 ASN A 277 UNP Q96C86 HIS 277 ENGINEERED MUTATION SEQADV 1ST4 ASN B 277 UNP Q96C86 HIS 277 ENGINEERED MUTATION SEQRES 1 B 337 MET ALA ASP ALA ALA PRO GLN LEU GLY LYS ARG LYS ARG SEQRES 2 B 337 GLU LEU ASP VAL GLU GLU ALA HIS ALA ALA SER THR GLU SEQRES 3 B 337 GLU LYS GLU ALA GLY VAL GLY ASN GLY THR CYS ALA PRO SEQRES 4 B 337 VAL ARG LEU PRO PHE SER GLY PHE ARG LEU GLN LYS VAL SEQRES 5 B 337 LEU ARG GLU SER ALA ARG ASP LYS ILE ILE PHE LEU HIS SEQRES 6 B 337 GLY LYS VAL ASN GLU ALA SER GLY ASP GLY ASP GLY GLU SEQRES 7 B 337 ASP ALA VAL VAL ILE LEU GLU LYS THR PRO PHE GLN VAL SEQRES 8 B 337 GLU GLN VAL ALA GLN LEU LEU THR GLY SER PRO GLU LEU SEQRES 9 B 337 GLN LEU GLN PHE SER ASN ASP ILE TYR SER THR TYR HIS SEQRES 10 B 337 LEU PHE PRO PRO ARG GLN LEU ASN ASP VAL LYS THR THR SEQRES 11 B 337 VAL VAL TYR PRO ALA THR GLU LYS HIS LEU GLN LYS TYR SEQRES 12 B 337 LEU ARG GLN ASP LEU ARG LEU ILE ARG GLU THR GLY ASP SEQRES 13 B 337 ASP TYR ARG ASN ILE THR LEU PRO HIS LEU GLU SER GLN SEQRES 14 B 337 SER LEU SER ILE GLN TRP VAL TYR ASN ILE LEU ASP LYS SEQRES 15 B 337 LYS ALA GLU ALA ASP ARG ILE VAL PHE GLU ASN PRO ASP SEQRES 16 B 337 PRO SER ASP GLY PHE VAL LEU ILE PRO ASP LEU LYS TRP SEQRES 17 B 337 ASN GLN GLN GLN LEU ASP ASP LEU TYR LEU ILE ALA ILE SEQRES 18 B 337 CYS HIS ARG ARG GLY ILE ARG SER LEU ARG ASP LEU THR SEQRES 19 B 337 PRO GLU HIS LEU PRO LEU LEU ARG ASN ILE LEU HIS GLN SEQRES 20 B 337 GLY GLN GLU ALA ILE LEU GLN ARG TYR ARG MET LYS GLY SEQRES 21 B 337 ASP HIS LEU ARG VAL TYR LEU HIS TYR LEU PRO SER TYR SEQRES 22 B 337 TYR HIS LEU ASN VAL HIS PHE THR ALA LEU GLY PHE GLU SEQRES 23 B 337 ALA PRO GLY SER GLY VAL GLU ARG ALA HIS LEU LEU ALA SEQRES 24 B 337 GLU VAL ILE GLU ASN LEU GLU CYS ASP PRO ARG HIS TYR SEQRES 25 B 337 GLN GLN ARG THR LEU THR PHE ALA LEU ARG ALA ASP ASP SEQRES 26 B 337 PRO LEU LEU LYS LEU LEU GLN GLU ALA GLN GLN SER SEQRES 1 A 337 MET ALA ASP ALA ALA PRO GLN LEU GLY LYS ARG LYS ARG SEQRES 2 A 337 GLU LEU ASP VAL GLU GLU ALA HIS ALA ALA SER THR GLU SEQRES 3 A 337 GLU LYS GLU ALA GLY VAL GLY ASN GLY THR CYS ALA PRO SEQRES 4 A 337 VAL ARG LEU PRO PHE SER GLY PHE ARG LEU GLN LYS VAL SEQRES 5 A 337 LEU ARG GLU SER ALA ARG ASP LYS ILE ILE PHE LEU HIS SEQRES 6 A 337 GLY LYS VAL ASN GLU ALA SER GLY ASP GLY ASP GLY GLU SEQRES 7 A 337 ASP ALA VAL VAL ILE LEU GLU LYS THR PRO PHE GLN VAL SEQRES 8 A 337 GLU GLN VAL ALA GLN LEU LEU THR GLY SER PRO GLU LEU SEQRES 9 A 337 GLN LEU GLN PHE SER ASN ASP ILE TYR SER THR TYR HIS SEQRES 10 A 337 LEU PHE PRO PRO ARG GLN LEU ASN ASP VAL LYS THR THR SEQRES 11 A 337 VAL VAL TYR PRO ALA THR GLU LYS HIS LEU GLN LYS TYR SEQRES 12 A 337 LEU ARG GLN ASP LEU ARG LEU ILE ARG GLU THR GLY ASP SEQRES 13 A 337 ASP TYR ARG ASN ILE THR LEU PRO HIS LEU GLU SER GLN SEQRES 14 A 337 SER LEU SER ILE GLN TRP VAL TYR ASN ILE LEU ASP LYS SEQRES 15 A 337 LYS ALA GLU ALA ASP ARG ILE VAL PHE GLU ASN PRO ASP SEQRES 16 A 337 PRO SER ASP GLY PHE VAL LEU ILE PRO ASP LEU LYS TRP SEQRES 17 A 337 ASN GLN GLN GLN LEU ASP ASP LEU TYR LEU ILE ALA ILE SEQRES 18 A 337 CYS HIS ARG ARG GLY ILE ARG SER LEU ARG ASP LEU THR SEQRES 19 A 337 PRO GLU HIS LEU PRO LEU LEU ARG ASN ILE LEU HIS GLN SEQRES 20 A 337 GLY GLN GLU ALA ILE LEU GLN ARG TYR ARG MET LYS GLY SEQRES 21 A 337 ASP HIS LEU ARG VAL TYR LEU HIS TYR LEU PRO SER TYR SEQRES 22 A 337 TYR HIS LEU ASN VAL HIS PHE THR ALA LEU GLY PHE GLU SEQRES 23 A 337 ALA PRO GLY SER GLY VAL GLU ARG ALA HIS LEU LEU ALA SEQRES 24 A 337 GLU VAL ILE GLU ASN LEU GLU CYS ASP PRO ARG HIS TYR SEQRES 25 A 337 GLN GLN ARG THR LEU THR PHE ALA LEU ARG ALA ASP ASP SEQRES 26 A 337 PRO LEU LEU LYS LEU LEU GLN GLU ALA GLN GLN SER HET GTA B 452 51 HET YT3 A 501 1 HET YT3 A 502 1 HET YT3 A 503 1 HET GTA A 451 51 HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETNAM YT3 YTTRIUM (III) ION HETSYN GTA 7-METHYL-GPPPA FORMUL 3 GTA 2(C21 H30 N10 O17 P3 1+) FORMUL 4 YT3 3(Y 3+) FORMUL 8 HOH *401(H2 O) HELIX 1 1 GLN B 90 GLY B 100 1 11 HELIX 2 2 PRO B 121 ASN B 125 5 5 HELIX 3 3 THR B 136 LEU B 144 1 9 HELIX 4 4 THR B 154 ILE B 161 1 8 HELIX 5 5 ILE B 161 GLN B 169 1 9 HELIX 6 6 ILE B 173 ASP B 181 1 9 HELIX 7 7 GLU B 185 ILE B 189 5 5 HELIX 8 8 SER B 229 LEU B 233 5 5 HELIX 9 9 THR B 234 GLU B 236 5 3 HELIX 10 10 HIS B 237 ARG B 257 1 21 HELIX 11 11 LYS B 259 ASP B 261 5 3 HELIX 12 12 LEU B 298 ASP B 308 1 11 HELIX 13 13 ARG B 310 ARG B 315 1 6 HELIX 14 14 ASP B 325 GLN B 336 1 12 HELIX 15 15 GLN A 90 THR A 99 1 10 HELIX 16 16 PRO A 121 ASN A 125 5 5 HELIX 17 17 THR A 136 LEU A 144 1 9 HELIX 18 18 THR A 154 ILE A 161 1 8 HELIX 19 19 HIS A 165 SER A 170 1 6 HELIX 20 20 ILE A 173 ASP A 181 1 9 HELIX 21 21 GLU A 185 ILE A 189 5 5 HELIX 22 22 SER A 229 LEU A 233 5 5 HELIX 23 23 THR A 234 GLU A 236 5 3 HELIX 24 24 HIS A 237 ARG A 257 1 21 HELIX 25 25 LYS A 259 ASP A 261 5 3 HELIX 26 26 LEU A 298 ASP A 308 1 11 HELIX 27 27 ARG A 310 ARG A 315 1 6 HELIX 28 28 ASP A 325 ALA A 334 1 10 SHEET 1 A 6 PHE B 47 SER B 56 0 SHEET 2 A 6 ILE B 61 VAL B 68 -1 O HIS B 65 N LYS B 51 SHEET 3 A 6 GLU B 78 LYS B 86 -1 O GLU B 78 N VAL B 68 SHEET 4 A 6 VAL B 127 VAL B 132 -1 O THR B 130 N ILE B 83 SHEET 5 A 6 TYR A 113 PHE A 119 -1 O SER A 114 N VAL B 131 SHEET 6 A 6 GLU A 103 ASN A 110 -1 N GLU A 103 O PHE A 119 SHEET 1 B 6 GLN B 105 ASN B 110 0 SHEET 2 B 6 TYR B 113 LEU B 118 -1 O THR B 115 N GLN B 107 SHEET 3 B 6 VAL A 127 VAL A 132 -1 O VAL A 131 N SER B 114 SHEET 4 B 6 GLU A 78 LYS A 86 -1 N ILE A 83 O THR A 130 SHEET 5 B 6 ILE A 61 VAL A 68 -1 N LEU A 64 O VAL A 82 SHEET 6 B 6 ARG A 48 SER A 56 -1 N GLN A 50 O HIS A 65 SHEET 1 C 2 LEU B 148 GLU B 153 0 SHEET 2 C 2 LEU B 317 ARG B 322 -1 O LEU B 317 N GLU B 153 SHEET 1 D 6 PHE B 191 ASN B 193 0 SHEET 2 D 6 PHE B 200 PRO B 204 -1 O LEU B 202 N PHE B 191 SHEET 3 D 6 TYR B 217 CYS B 222 -1 O ILE B 219 N ILE B 203 SHEET 4 D 6 ASN B 277 ALA B 282 -1 O PHE B 280 N LEU B 218 SHEET 5 D 6 LEU B 263 HIS B 268 -1 N TYR B 266 O HIS B 279 SHEET 6 D 6 ALA B 295 LEU B 297 -1 O HIS B 296 N LEU B 267 SHEET 1 E 2 LEU A 148 GLU A 153 0 SHEET 2 E 2 LEU A 317 ARG A 322 -1 O LEU A 317 N GLU A 153 SHEET 1 F 6 PHE A 191 ASN A 193 0 SHEET 2 F 6 PHE A 200 PRO A 204 -1 O LEU A 202 N PHE A 191 SHEET 3 F 6 TYR A 217 CYS A 222 -1 O ILE A 219 N ILE A 203 SHEET 4 F 6 ASN A 277 ALA A 282 -1 O PHE A 280 N LEU A 218 SHEET 5 F 6 LEU A 263 HIS A 268 -1 N TYR A 266 O HIS A 279 SHEET 6 F 6 ALA A 295 LEU A 297 -1 O HIS A 296 N LEU A 267 CISPEP 1 TYR B 133 PRO B 134 0 -0.52 CISPEP 2 TYR B 269 LEU B 270 0 -1.78 CISPEP 3 TYR A 133 PRO A 134 0 -8.91 CISPEP 4 TYR A 269 LEU A 270 0 2.21 SITE 1 AC1 4 ASP A 74 ASP A 76 GLU A 92 YT3 A 502 SITE 1 AC2 4 ASP A 74 ASP A 76 GLU A 92 YT3 A 501 SITE 1 AC3 1 ASP A 76 SITE 1 AC4 23 ARG A 54 PHE A 63 ILE A 83 THR A 130 SITE 2 AC4 23 TRP A 175 GLU A 185 PRO A 204 ASP A 205 SITE 3 AC4 23 LEU A 206 LYS A 207 HIS A 268 PRO A 271 SITE 4 AC4 23 SER A 272 TYR A 273 ASN A 277 HIS A 279 SITE 5 AC4 23 ARG A 294 HOH A 519 HOH A 575 HOH A 599 SITE 6 AC4 23 HOH A 702 HOH A 730 TYR B 113 SITE 1 AC5 21 ARG B 145 GLN B 146 TRP B 175 GLU B 185 SITE 2 AC5 21 PRO B 204 ASP B 205 LEU B 206 LYS B 207 SITE 3 AC5 21 TYR B 217 HIS B 268 PRO B 271 SER B 272 SITE 4 AC5 21 TYR B 273 ASN B 277 HIS B 279 ARG B 294 SITE 5 AC5 21 ARG B 322 HOH B 563 HOH B 605 HOH B 619 SITE 6 AC5 21 HOH B 621 CRYST1 60.037 95.452 177.981 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005619 0.00000 MASTER 498 0 5 28 28 0 15 6 0 0 0 52 END