HEADER ISOMERASE 24-MAR-04 1SSD TITLE UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE HINGE TITLE 2 MUTANTS IN TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DF502; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBSX1C KEYWDS ARCHAE, EVOLUTION, FLEXIBLE LOOP-6, TIM, N-HINGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN,N.S.SAMPSON, AUTHOR 2 R.K.WIERENGA REVDAT 3 13-JUL-11 1SSD 1 VERSN REVDAT 2 24-FEB-09 1SSD 1 VERSN REVDAT 1 24-AUG-04 1SSD 0 JRNL AUTH I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN, JRNL AUTH 2 N.S.SAMPSON,R.K.WIERENGA JRNL TITL UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE JRNL TITL 2 HINGE MUTANTS IN TRIOSEPHOSPHATE ISOMERASE JRNL REF PROTEIN ENG.DES.SEL. V. 17 375 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15166315 JRNL DOI 10.1093/PROTEIN/GZH048 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3834 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3480 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5184 ; 1.188 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8120 ; 0.760 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4284 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 755 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3834 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2281 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.109 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2428 ; 0.261 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3870 ; 0.537 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 0.938 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1314 ; 1.684 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3904 21.6317 32.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0611 REMARK 3 T33: 0.1523 T12: -0.0292 REMARK 3 T13: 0.0371 T23: -0.0961 REMARK 3 L TENSOR REMARK 3 L11: 3.0478 L22: 3.0216 REMARK 3 L33: 1.7135 L12: -0.1473 REMARK 3 L13: -0.3001 L23: -0.8070 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: -0.0213 S13: -0.5146 REMARK 3 S21: 0.2648 S22: 0.0750 S23: 0.2164 REMARK 3 S31: 0.1478 S32: 0.1412 S33: -0.0185 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9118 52.4139 17.7101 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.1623 REMARK 3 T33: 0.0631 T12: -0.0339 REMARK 3 T13: 0.0048 T23: -0.0930 REMARK 3 L TENSOR REMARK 3 L11: 2.6602 L22: 3.5395 REMARK 3 L33: 2.6108 L12: -0.4929 REMARK 3 L13: -0.0725 L23: -0.7276 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.2496 S13: 0.2700 REMARK 3 S21: 0.1670 S22: -0.1324 S23: 0.2694 REMARK 3 S31: -0.3874 S32: -0.2623 S33: 0.0731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.410 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 8TIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, AMMONIUM SULPHATE, SODIUM REMARK 280 CHLORIDE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.93700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.21100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.46850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.21100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.21100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.40550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.21100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.46850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.21100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.21100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.40550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.93700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINSA ONE BIOLOGICAL UNIT, DIMER REMARK 300 (CHAINS A AND B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.93700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 165 O HOH A 1016 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 225 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -141.65 54.68 REMARK 500 VAL A 196 -84.85 -130.59 REMARK 500 LYS B 13 -141.85 53.51 REMARK 500 ILE B 138 38.59 -95.13 REMARK 500 VAL B 196 -85.00 -123.97 REMARK 500 ASN B 245 30.28 -96.35 REMARK 500 LYS B 247 51.87 -96.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SPQ RELATED DB: PDB REMARK 900 A176K MUTANT REMARK 900 RELATED ID: 1SQ7 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS REMARK 900 RELATED ID: 1SSG RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS WITH PGA REMARK 900 RELATED ID: 1SU5 RELATED DB: PDB REMARK 900 K174N, T175P, A176N MUTANTS REMARK 900 RELATED ID: 1SW0 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS WITH PGA REMARK 900 RELATED ID: 1SW3 RELATED DB: PDB REMARK 900 T175V MUTANT REMARK 900 RELATED ID: 1SW7 RELATED DB: PDB REMARK 900 K174N, T175S, A176S MUTANTS DBREF 1SSD A 2 248 UNP P00940 TPIS_CHICK 1 247 DBREF 1SSD B 2 248 UNP P00940 TPIS_CHICK 1 247 SEQADV 1SSD TYR A 174 UNP P00940 LYS 173 ENGINEERED SEQADV 1SSD SER A 175 UNP P00940 THR 174 ENGINEERED SEQADV 1SSD LEU A 176 UNP P00940 ALA 175 ENGINEERED SEQADV 1SSD TYR B 174 UNP P00940 LYS 173 ENGINEERED SEQADV 1SSD SER B 175 UNP P00940 THR 174 ENGINEERED SEQADV 1SSD LEU B 176 UNP P00940 ALA 175 ENGINEERED SEQRES 1 A 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 A 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 A 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 A 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 A 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 A 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 A 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 A 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 A 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 A 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 A 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 A 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 A 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 247 GLY THR GLY TYR SER LEU THR PRO GLN GLN ALA GLN GLU SEQRES 15 A 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS VAL SEQRES 16 A 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 A 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 A 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS SEQRES 1 B 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 B 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 B 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 B 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 B 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 B 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 B 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 B 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 B 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 B 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 B 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 B 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 B 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 247 GLY THR GLY TYR SER LEU THR PRO GLN GLN ALA GLN GLU SEQRES 15 B 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS VAL SEQRES 16 B 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 B 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 B 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS HET SO4 A1001 5 HET SO4 B1002 5 HET SO4 B1003 5 HET SO4 A1004 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *88(H2 O) HELIX 1 1 ASP A 17 GLY A 30 1 14 HELIX 2 2 PRO A 44 ILE A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 ILE A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 ALA A 136 1 7 HELIX 8 8 ILE A 138 ASP A 152 1 15 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 ILE A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 ASN A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 PRO A 238 5 7 HELIX 15 15 GLU A 239 ASN A 245 1 7 HELIX 16 16 ASP B 17 GLY B 30 1 14 HELIX 17 17 PRO B 44 ILE B 46 5 3 HELIX 18 18 TYR B 47 LEU B 55 1 9 HELIX 19 19 SER B 79 ILE B 86 1 8 HELIX 20 20 HIS B 95 PHE B 102 1 8 HELIX 21 21 SER B 105 GLU B 119 1 15 HELIX 22 22 LYS B 130 ALA B 136 1 7 HELIX 23 23 ILE B 138 ASP B 152 1 15 HELIX 24 24 PRO B 166 ILE B 170 5 5 HELIX 25 25 THR B 177 VAL B 196 1 20 HELIX 26 26 SER B 197 THR B 204 1 8 HELIX 27 27 ASN B 216 SER B 222 1 7 HELIX 28 28 GLY B 232 PRO B 238 5 7 HELIX 29 29 GLU B 239 ASN B 245 1 7 SHEET 1 A 9 PHE A 6 ASN A 11 0 SHEET 2 A 9 THR A 37 ALA A 43 1 O GLY A 42 N GLY A 10 SHEET 3 A 9 GLY A 60 ALA A 63 1 O ALA A 62 N CYS A 41 SHEET 4 A 9 TRP A 90 LEU A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O ALA A 163 N ALA A 125 SHEET 7 A 9 ARG A 205 GLY A 209 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 11 1 N ASN A 11 O VAL A 231 SHEET 1 B 9 PHE B 6 ASN B 11 0 SHEET 2 B 9 THR B 37 GLY B 42 1 O GLY B 42 N GLY B 10 SHEET 3 B 9 GLY B 60 ALA B 63 1 O GLY B 60 N VAL B 39 SHEET 4 B 9 TRP B 90 LEU B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 B 9 VAL B 160 TYR B 164 1 O VAL B 161 N VAL B 123 SHEET 7 B 9 ARG B 205 GLY B 209 1 O ILE B 207 N TYR B 164 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 11 1 N ASN B 11 O VAL B 231 SITE 1 AC1 5 GLY A 171 SER A 211 GLY A 233 HOH A1015 SITE 2 AC1 5 HOH A1033 SITE 1 AC2 8 ILE B 170 GLY B 171 SER B 211 GLY B 232 SITE 2 AC2 8 GLY B 233 HOH B1006 HOH B1020 HOH B1051 SITE 1 AC3 2 ASP B 56 ALA B 57 SITE 1 AC4 2 ARG A 134 HIS A 195 CRYST1 88.422 88.422 161.874 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006178 0.00000 MASTER 392 0 4 29 18 0 6 6 0 0 0 38 END