HEADER TRANSFERASE 17-MAR-04 1SQ6 TITLE PLASMODIUM FALCIPARUM HOMOLOG OF URIDINE PHOSPHORYLASE/PURINE TITLE 2 NUCLEOSIDE PHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE PHOSPHORYLASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PLASMODB CHR5.GEN_243; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 SYSTEM; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS STRUCTURAL GENOMICS, ALPHA+BETA, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ROBIEN,W.G.J.HOL,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 4 13-JUL-11 1SQ6 1 VERSN REVDAT 3 24-FEB-09 1SQ6 1 VERSN REVDAT 2 01-FEB-05 1SQ6 1 AUTHOR KEYWDS REMARK REVDAT 1 06-APR-04 1SQ6 0 JRNL AUTH C.SCHNICK,M.A.ROBIEN,A.M.BRZOZOWSKI,E.J.DODSON, JRNL AUTH 2 G.N.MURSHUDOV,L.ANDERSON,J.R.LUFT,C.MEHLIN,W.G.HOL, JRNL AUTH 3 J.A.BRANNIGAN,A.J.WILKINSON JRNL TITL STRUCTURES OF PLASMODIUM FALCIPARUM PURINE NUCLEOSIDE JRNL TITL 2 PHOSPHORYLASE COMPLEXED WITH SULFATE AND ITS NATURAL JRNL TITL 3 SUBSTRATE INOSINE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1245 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16131758 JRNL DOI 10.1107/S0907444905020251 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 3 NUMBER OF REFLECTIONS : 7135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1737 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2346 ; 1.269 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 5.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1261 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 793 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 1.855 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1791 ; 3.286 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 625 ; 4.156 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 555 ; 6.106 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL SI(111) 50 MICRON REMARK 200 COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 28.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, MOPS, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.54350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.44925 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.54350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.44925 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.54350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.44925 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.54350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.44925 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.54350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.44925 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.54350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.44925 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.89851 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.89851 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.89851 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.89851 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.85733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.89851 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.85733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.89851 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.85733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS ARE NOT CERTAIN THE BIOLOGICAL UNIT IS A REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -217.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 95.08700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 164.69552 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -95.08700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 164.69552 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -95.08700 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 54.89851 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 89.85733 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 219.59402 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 89.85733 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 95.08700 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 54.89851 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 89.85733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MSE A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 CYS A 216 REMARK 465 PRO A 217 REMARK 465 PHE A 218 REMARK 465 LYS A 219 REMARK 465 TRP A 220 REMARK 465 ASP A 221 REMARK 465 GLU A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 PHE A 225 REMARK 465 ASP A 226 REMARK 465 ASN A 227 REMARK 465 ASN A 228 REMARK 465 LEU A 229 REMARK 465 VAL A 230 REMARK 465 PRO A 231 REMARK 465 ALA A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 140 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 53 -129.75 46.15 REMARK 500 ASP A 106 2.46 80.32 REMARK 500 LEU A 107 -80.89 -135.06 REMARK 500 GLU A 122 54.31 -100.22 REMARK 500 ASP A 123 -162.78 -128.21 REMARK 500 HIS A 131 143.12 -34.32 REMARK 500 ILE A 173 -61.76 -98.22 REMARK 500 GLU A 190 -154.08 -141.85 REMARK 500 LYS A 204 40.38 70.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFAL008421AAA RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITORS NOTE THAT THE ABSENCE OF REMARK 999 ELECTRON DENSITY FOR PHE 140 MAY BE DUE REMARK 999 TO A DISORDERED SIDE CHAIN OR ALTERNATIVELY REMARK 999 MAY BE DUE TO A UNEXPECTED CLONING ARTIFACT. DBREF 1SQ6 A 9 253 UNP Q8I3X4 Q8I3X4_PLAF7 1 245 SEQADV 1SQ6 MSE A 1 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 ALA A 2 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 3 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 4 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 5 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 6 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 7 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 8 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 MSE A 9 UNP Q8I3X4 MET 1 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 167 UNP Q8I3X4 MET 159 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 191 UNP Q8I3X4 MET 183 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 197 UNP Q8I3X4 MET 189 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 237 UNP Q8I3X4 MET 229 MODIFIED RESIDUE SEQRES 1 A 253 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP ASN LEU LEU SEQRES 2 A 253 ARG HIS LEU LYS ILE SER LYS GLU GLN ILE THR PRO VAL SEQRES 3 A 253 VAL LEU VAL VAL GLY ASP PRO GLY ARG VAL ASP LYS ILE SEQRES 4 A 253 LYS VAL VAL CYS ASP SER TYR VAL ASP LEU ALA TYR ASN SEQRES 5 A 253 ARG GLU TYR LYS SER VAL GLU CYS HIS TYR LYS GLY GLN SEQRES 6 A 253 LYS PHE LEU CYS VAL SER HIS GLY VAL GLY SER ALA GLY SEQRES 7 A 253 CYS ALA VAL CYS PHE GLU GLU LEU CYS GLN ASN GLY ALA SEQRES 8 A 253 LYS VAL ILE ILE ARG ALA GLY SER CYS GLY SER LEU GLN SEQRES 9 A 253 PRO ASP LEU ILE LYS ARG GLY ASP ILE CYS ILE CYS ASN SEQRES 10 A 253 ALA ALA VAL ARG GLU ASP ARG VAL SER HIS LEU LEU ILE SEQRES 11 A 253 HIS GLY ASP PHE PRO ALA VAL GLY ASP PHE ASP VAL TYR SEQRES 12 A 253 ASP THR LEU ASN LYS CYS ALA GLN GLU LEU ASN VAL PRO SEQRES 13 A 253 VAL PHE ASN GLY ILE SER VAL SER SER ASP MSE TYR TYR SEQRES 14 A 253 PRO ASN LYS ILE ILE PRO SER ARG LEU GLU ASP TYR SER SEQRES 15 A 253 LYS ALA ASN ALA ALA VAL VAL GLU MSE GLU LEU ALA THR SEQRES 16 A 253 LEU MSE VAL ILE GLY THR LEU ARG LYS VAL LYS THR GLY SEQRES 17 A 253 GLY ILE LEU ILE VAL ASP GLY CYS PRO PHE LYS TRP ASP SEQRES 18 A 253 GLU GLY ASP PHE ASP ASN ASN LEU VAL PRO HIS GLN LEU SEQRES 19 A 253 GLU ASN MSE ILE LYS ILE ALA LEU GLY ALA CYS ALA LYS SEQRES 20 A 253 LEU ALA THR LYS TYR ALA MODRES 1SQ6 MSE A 167 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 191 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 197 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 237 MET SELENOMETHIONINE HET MSE A 167 8 HET MSE A 191 8 HET MSE A 197 8 HET MSE A 237 8 HET SO4 A 401 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *48(H2 O) HELIX 1 1 SER A 19 ILE A 23 5 5 HELIX 2 2 ASP A 32 CYS A 43 1 12 HELIX 3 3 GLY A 75 GLN A 88 1 14 HELIX 4 4 VAL A 125 LEU A 129 5 5 HELIX 5 5 ASP A 139 LEU A 153 1 15 HELIX 6 6 ARG A 177 ALA A 184 1 8 HELIX 7 7 GLU A 192 LYS A 204 1 13 HELIX 8 8 HIS A 232 THR A 250 1 19 SHEET 1 A 9 SER A 45 ASN A 52 0 SHEET 2 A 9 TYR A 55 TYR A 62 -1 O GLU A 59 N VAL A 47 SHEET 3 A 9 GLN A 65 SER A 71 -1 O PHE A 67 N CYS A 60 SHEET 4 A 9 VAL A 26 VAL A 30 1 N LEU A 28 O LEU A 68 SHEET 5 A 9 VAL A 93 SER A 102 1 O ILE A 95 N VAL A 29 SHEET 6 A 9 VAL A 188 GLU A 190 -1 O VAL A 189 N GLY A 101 SHEET 7 A 9 VAL A 157 SER A 165 1 N VAL A 163 O VAL A 188 SHEET 8 A 9 ILE A 113 GLU A 122 1 N ILE A 113 O PHE A 158 SHEET 9 A 9 ALA A 136 VAL A 137 -1 O ALA A 136 N ALA A 119 SHEET 1 B 8 SER A 45 ASN A 52 0 SHEET 2 B 8 TYR A 55 TYR A 62 -1 O GLU A 59 N VAL A 47 SHEET 3 B 8 GLN A 65 SER A 71 -1 O PHE A 67 N CYS A 60 SHEET 4 B 8 VAL A 26 VAL A 30 1 N LEU A 28 O LEU A 68 SHEET 5 B 8 VAL A 93 SER A 102 1 O ILE A 95 N VAL A 29 SHEET 6 B 8 LYS A 206 GLY A 215 1 O ILE A 210 N ARG A 96 SHEET 7 B 8 ILE A 113 GLU A 122 -1 N CYS A 114 O LEU A 211 SHEET 8 B 8 ALA A 136 VAL A 137 -1 O ALA A 136 N ALA A 119 LINK C ASP A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N TYR A 168 1555 1555 1.32 LINK C GLU A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N GLU A 192 1555 1555 1.33 LINK C LEU A 196 N MSE A 197 1555 1555 1.34 LINK C MSE A 197 N VAL A 198 1555 1555 1.33 LINK C ASN A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N ILE A 238 1555 1555 1.32 SITE 1 AC1 5 GLY A 31 ARG A 53 ARG A 96 GLY A 98 SITE 2 AC1 5 SER A 99 CRYST1 95.087 95.087 134.786 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010517 0.006072 0.000000 0.00000 SCALE2 0.000000 0.012144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007419 0.00000 MASTER 420 0 5 8 17 0 2 6 0 0 0 20 END