HEADER RNA BINDING PROTEIN 04-MAR-04 1SJQ TITLE NMR STRUCTURE OF RRM1 FROM HUMAN POLYPYRIMIDINE TRACT TITLE 2 BINDING PROTEIN ISOFORM 1 (PTB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM1, RESIDUES 54-147; COMPND 5 SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, COMPND 6 HNRNP I, 57 KDA RNA-BINDING PROTEIN PPTB-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTBP1, PTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009 (QIAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE9 KEYWDS BABBAB MOTIF, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK, AUTHOR 2 M.R.CONTE,C.M.READ,P.D.CARY,D.I.SVERGUN,P.V.KONAREV, AUTHOR 3 M.V.PETOUKHOV,S.CURRY,S.J.MATTHEWS REVDAT 2 24-FEB-09 1SJQ 1 VERSN REVDAT 1 14-SEP-04 1SJQ 0 JRNL AUTH P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA, JRNL AUTH 2 J.K.TYZACK,M.R.CONTE,C.M.READ,P.D.CARY,D.I.SVERGUN, JRNL AUTH 3 P.V.KONAREV,S.CURRY,S.J.MATTHEWS JRNL TITL STRUCTURE AND RNA INTERACTIONS OF THE N-TERMINAL JRNL TITL 2 RRM DOMAINS OF PTB JRNL REF STRUCTURE V. 12 1631 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15341728 JRNL DOI 10.1016/J.STR.2004.07.008 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER, A.T REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021769. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.3 M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PTB1-1 U-15N,13C, 50 MM REMARK 210 NA PHOSPHATE BUFFER, 100 MM REMARK 210 NACL, 2 MM NAN3,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, AURELIA 2.8.11, REMARK 210 NMRPIPE 1, NMRVIEW 4.1.3, X- REMARK 210 PLOR 3.851 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 100 REMARK 465 ASN A 101 REMARK 465 GLN A 102 REMARK 465 ALA A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 15 86.12 -52.04 REMARK 500 1 ILE A 26 110.60 -27.22 REMARK 500 1 ASP A 27 -18.74 146.07 REMARK 500 1 VAL A 28 -167.78 -52.41 REMARK 500 1 ASN A 45 152.31 170.98 REMARK 500 1 LYS A 52 55.88 -107.90 REMARK 500 1 SER A 74 -57.19 -122.25 REMARK 500 1 ARG A 80 23.37 46.58 REMARK 500 1 LYS A 92 -88.63 -38.54 REMARK 500 1 ASP A 97 -91.04 40.77 REMARK 500 1 SER A 98 37.28 -157.83 REMARK 500 2 PRO A 15 -86.03 -65.79 REMARK 500 2 PRO A 25 78.32 -53.32 REMARK 500 2 ILE A 26 118.33 -34.62 REMARK 500 2 ASP A 27 -19.55 149.76 REMARK 500 2 VAL A 28 -155.38 -55.44 REMARK 500 2 ASN A 45 151.72 176.40 REMARK 500 2 ASN A 53 78.73 36.35 REMARK 500 2 ASN A 66 -70.01 -51.82 REMARK 500 2 ARG A 80 16.67 56.88 REMARK 500 2 ASN A 90 31.32 -94.47 REMARK 500 3 VAL A 14 112.07 51.57 REMARK 500 3 PRO A 15 -86.13 -65.35 REMARK 500 3 SER A 16 172.51 167.08 REMARK 500 3 LYS A 23 90.82 43.77 REMARK 500 3 LEU A 24 115.42 -167.66 REMARK 500 3 PRO A 25 73.43 -59.08 REMARK 500 3 ILE A 26 153.42 -30.01 REMARK 500 3 ASP A 27 9.43 87.46 REMARK 500 3 VAL A 28 -149.93 -57.86 REMARK 500 3 ASN A 45 146.95 -176.88 REMARK 500 3 ASN A 53 86.47 68.81 REMARK 500 3 THR A 73 -31.76 -35.54 REMARK 500 3 ARG A 80 -59.51 67.27 REMARK 500 3 ASN A 90 34.35 -96.38 REMARK 500 3 LYS A 92 -72.34 -66.54 REMARK 500 4 ARG A 17 -53.30 -179.53 REMARK 500 4 PRO A 25 80.15 -60.49 REMARK 500 4 ILE A 26 154.61 -32.18 REMARK 500 4 VAL A 28 -165.54 -54.81 REMARK 500 4 ASN A 45 158.47 170.69 REMARK 500 4 LYS A 50 -168.39 -74.30 REMARK 500 4 ASN A 53 77.93 159.97 REMARK 500 4 ARG A 80 -62.12 62.24 REMARK 500 4 PRO A 83 106.01 -55.30 REMARK 500 4 PHE A 88 -173.66 -65.48 REMARK 500 4 HIS A 91 45.11 159.37 REMARK 500 4 ASP A 97 111.60 57.15 REMARK 500 5 SER A 16 63.64 36.17 REMARK 500 5 LYS A 23 31.66 39.32 REMARK 500 5 PRO A 25 82.07 -51.98 REMARK 500 5 ILE A 26 155.71 -34.24 REMARK 500 5 ASP A 27 -3.05 80.88 REMARK 500 5 VAL A 28 -166.06 -54.64 REMARK 500 5 ASN A 45 165.54 170.85 REMARK 500 5 ASN A 53 84.28 56.89 REMARK 500 5 ARG A 80 14.60 59.92 REMARK 500 5 ASN A 90 -162.33 38.40 REMARK 500 5 HIS A 91 -153.04 -105.03 REMARK 500 5 ASP A 97 178.60 164.57 REMARK 500 5 SER A 98 34.46 -153.31 REMARK 500 6 ARG A 17 -53.79 -142.11 REMARK 500 6 ILE A 26 155.05 -34.42 REMARK 500 6 ASP A 27 -4.97 86.64 REMARK 500 6 VAL A 28 -154.58 -59.95 REMARK 500 6 SER A 35 -34.55 -38.62 REMARK 500 6 ASN A 45 145.74 176.68 REMARK 500 6 LYS A 50 -172.88 -62.34 REMARK 500 6 LYS A 52 -21.29 88.87 REMARK 500 6 ASN A 53 63.73 68.11 REMARK 500 6 GLU A 63 -30.12 -38.92 REMARK 500 6 ASN A 66 -70.26 -56.00 REMARK 500 6 THR A 73 -29.12 -39.66 REMARK 500 6 ARG A 80 -61.33 62.93 REMARK 500 6 PRO A 83 96.79 -66.73 REMARK 500 6 HIS A 91 -153.74 -84.71 REMARK 500 6 GLU A 93 160.39 -38.99 REMARK 500 6 ASP A 97 -165.64 47.16 REMARK 500 6 SER A 98 112.70 65.29 REMARK 500 7 PRO A 25 67.15 -63.25 REMARK 500 7 ILE A 26 112.03 -15.28 REMARK 500 7 ASP A 27 -10.71 149.41 REMARK 500 7 THR A 29 154.16 90.64 REMARK 500 7 ASN A 53 84.02 45.88 REMARK 500 7 ARG A 80 30.30 37.24 REMARK 500 7 SER A 89 81.01 -152.03 REMARK 500 7 ASN A 90 70.80 54.66 REMARK 500 7 HIS A 91 96.42 -44.77 REMARK 500 7 GLU A 93 137.34 -39.42 REMARK 500 7 ASP A 97 175.00 66.07 REMARK 500 8 SER A 16 146.80 -175.40 REMARK 500 8 ILE A 26 108.95 -30.64 REMARK 500 8 ASP A 27 -19.48 148.69 REMARK 500 8 VAL A 28 -162.71 -54.69 REMARK 500 8 ASN A 45 149.44 178.06 REMARK 500 8 SER A 74 -51.87 -127.21 REMARK 500 8 ASN A 90 64.65 -64.48 REMARK 500 8 HIS A 91 -92.72 38.04 REMARK 500 8 LYS A 92 80.47 51.83 REMARK 500 8 ASP A 97 175.30 -57.57 REMARK 500 8 SER A 98 81.10 47.59 REMARK 500 9 SER A 16 159.01 68.53 REMARK 500 9 ARG A 17 -42.74 -166.44 REMARK 500 9 LYS A 23 38.95 37.19 REMARK 500 9 PRO A 25 74.30 -57.33 REMARK 500 9 ILE A 26 119.42 -33.23 REMARK 500 9 ASP A 27 -19.39 150.95 REMARK 500 9 VAL A 28 -153.81 -54.99 REMARK 500 9 ASN A 45 119.93 170.93 REMARK 500 9 LYS A 52 -8.38 82.65 REMARK 500 9 ASN A 53 77.53 61.29 REMARK 500 9 SER A 89 82.56 -152.39 REMARK 500 9 ASN A 90 -152.83 82.51 REMARK 500 9 HIS A 91 -58.98 -139.54 REMARK 500 9 LYS A 92 64.60 38.88 REMARK 500 9 GLU A 93 139.23 -39.06 REMARK 500 9 SER A 98 53.16 173.74 REMARK 500 10 VAL A 14 111.98 -37.11 REMARK 500 10 PRO A 25 74.84 -64.51 REMARK 500 10 ILE A 26 117.07 -31.83 REMARK 500 10 ASP A 27 -19.54 151.16 REMARK 500 10 VAL A 28 -155.88 -54.86 REMARK 500 10 ASN A 45 147.62 171.67 REMARK 500 10 LYS A 50 48.13 -82.03 REMARK 500 10 ASN A 53 64.89 62.72 REMARK 500 10 ARG A 80 30.86 36.25 REMARK 500 10 PRO A 83 107.28 -54.80 REMARK 500 10 PHE A 88 -174.88 -68.88 REMARK 500 10 LYS A 92 -82.25 -104.57 REMARK 500 10 ASP A 97 -170.54 42.99 REMARK 500 11 SER A 16 156.76 165.36 REMARK 500 11 PRO A 25 69.55 -64.48 REMARK 500 11 ILE A 26 111.59 -33.97 REMARK 500 11 ASP A 27 -22.90 150.70 REMARK 500 11 VAL A 28 -157.65 -56.79 REMARK 500 11 ASN A 45 146.53 174.08 REMARK 500 11 LYS A 50 44.70 -86.84 REMARK 500 11 PHE A 88 -179.36 -64.09 REMARK 500 11 HIS A 91 -172.81 -68.13 REMARK 500 11 ASP A 97 51.64 -101.09 REMARK 500 12 ARG A 17 -45.94 -170.54 REMARK 500 12 ILE A 26 148.98 -30.91 REMARK 500 12 ASP A 27 7.43 96.43 REMARK 500 12 VAL A 28 -151.75 -63.25 REMARK 500 12 ASN A 45 153.27 171.95 REMARK 500 12 ARG A 80 -58.72 71.75 REMARK 500 12 ASN A 90 49.81 -178.12 REMARK 500 12 HIS A 91 -80.25 -144.84 REMARK 500 12 GLU A 93 152.76 -42.84 REMARK 500 13 SER A 16 119.86 175.14 REMARK 500 13 ARG A 17 -57.95 -138.87 REMARK 500 13 PRO A 25 74.09 -67.03 REMARK 500 13 ILE A 26 148.47 -30.06 REMARK 500 13 ASP A 27 10.59 100.81 REMARK 500 13 VAL A 28 -151.53 -67.14 REMARK 500 13 ASN A 45 142.73 170.83 REMARK 500 13 LYS A 52 -10.14 85.09 REMARK 500 13 ARG A 80 18.80 53.90 REMARK 500 13 ASN A 90 -152.74 55.91 REMARK 500 13 ASP A 97 90.33 73.19 REMARK 500 13 SER A 98 -41.83 -155.98 REMARK 500 14 VAL A 14 153.87 55.10 REMARK 500 14 SER A 16 172.20 158.89 REMARK 500 14 PRO A 25 77.11 -56.14 REMARK 500 14 ILE A 26 125.45 -31.54 REMARK 500 14 ASP A 27 -15.45 146.31 REMARK 500 14 VAL A 28 -154.89 -55.15 REMARK 500 14 ASN A 45 144.16 175.61 REMARK 500 14 LYS A 52 48.10 -100.94 REMARK 500 14 ASN A 53 73.33 39.93 REMARK 500 14 ASN A 70 -36.74 -37.60 REMARK 500 14 THR A 73 -36.66 -38.10 REMARK 500 14 ARG A 80 24.28 47.33 REMARK 500 14 ASN A 90 -76.45 69.39 REMARK 500 14 HIS A 91 -13.57 85.72 REMARK 500 14 LYS A 92 89.53 -55.26 REMARK 500 14 GLU A 93 168.17 -41.47 REMARK 500 14 ASP A 97 -61.79 160.99 REMARK 500 15 PRO A 15 95.46 -52.11 REMARK 500 15 ARG A 17 -49.75 -148.07 REMARK 500 15 ILE A 26 110.02 -32.83 REMARK 500 15 ASP A 27 -17.46 146.69 REMARK 500 15 VAL A 28 -168.27 -51.19 REMARK 500 15 ASN A 45 137.25 170.75 REMARK 500 15 LYS A 52 -64.65 -160.46 REMARK 500 15 ASN A 53 43.94 155.08 REMARK 500 15 ASN A 60 -33.09 -35.69 REMARK 500 15 ARG A 80 34.53 28.92 REMARK 500 15 ASN A 90 42.51 -95.87 REMARK 500 16 PRO A 15 87.67 -51.43 REMARK 500 16 ARG A 17 -42.00 -137.22 REMARK 500 16 PRO A 25 61.69 -68.22 REMARK 500 16 ILE A 26 105.91 -8.50 REMARK 500 16 ASP A 27 24.91 129.18 REMARK 500 16 THR A 29 146.82 90.29 REMARK 500 16 ASN A 45 142.96 172.88 REMARK 500 16 LYS A 52 44.11 -104.03 REMARK 500 16 ASN A 53 75.09 48.76 REMARK 500 16 SER A 98 40.89 -162.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SJR RELATED DB: PDB REMARK 900 NMR STRUCTURE OF RRM2 FROM HUMAN POLYPYRIMIDINE TRACT REMARK 900 BINDING PROTEIN ISOFORM 1 (PTB1) DBREF 1SJQ A 12 105 UNP P26599 PTBP1_HUMAN 54 147 SEQADV 1SJQ MET A 1 UNP P26599 INITIATING METHIONINE SEQADV 1SJQ ARG A 2 UNP P26599 EXPRESSION TAG SEQADV 1SJQ GLY A 3 UNP P26599 EXPRESSION TAG SEQADV 1SJQ SER A 4 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 5 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 6 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 7 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 8 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 9 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 10 UNP P26599 EXPRESSION TAG SEQADV 1SJQ GLY A 11 UNP P26599 EXPRESSION TAG SEQADV 1SJQ SER A 12 UNP P26599 ALA 54 CLONING ARTIFACT SEQRES 1 A 105 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 A 105 VAL PRO SER ARG VAL ILE HIS ILE ARG LYS LEU PRO ILE SEQRES 3 A 105 ASP VAL THR GLU GLY GLU VAL ILE SER LEU GLY LEU PRO SEQRES 4 A 105 PHE GLY LYS VAL THR ASN LEU LEU MET LEU LYS GLY LYS SEQRES 5 A 105 ASN GLN ALA PHE ILE GLU MET ASN THR GLU GLU ALA ALA SEQRES 6 A 105 ASN THR MET VAL ASN TYR TYR THR SER VAL THR PRO VAL SEQRES 7 A 105 LEU ARG GLY GLN PRO ILE TYR ILE GLN PHE SER ASN HIS SEQRES 8 A 105 LYS GLU LEU LYS THR ASP SER SER PRO ASN GLN ALA ARG SEQRES 9 A 105 ALA HELIX 1 1 THR A 29 GLY A 41 1 13 HELIX 2 2 THR A 61 THR A 73 1 13 SHEET 1 A 3 VAL A 18 ILE A 21 0 SHEET 2 A 3 GLN A 54 MET A 59 -1 O ILE A 57 N ILE A 19 SHEET 3 A 3 VAL A 43 LEU A 49 -1 N THR A 44 O GLU A 58 SHEET 1 B 2 VAL A 78 LEU A 79 0 SHEET 2 B 2 GLN A 82 PRO A 83 -1 O GLN A 82 N LEU A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 297 0 0 2 5 0 0 6 0 0 0 9 END