HEADER TYROSINE-PROTEIN KINASE 08-JAN-99 1SGG TITLE THE SOLUTION STRUCTURE OF SAM DOMAIN FROM THE RECEPTOR TITLE 2 TYROSINE KINASE EPHB2, NMR, 10 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM DOMAIN; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: POTENTIAL TYROSINE PHOSPHORYLATION AT Y 25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 8 EXPRESSION_SYSTEM_TISSUE: EMBRYO; SOURCE 9 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28D KEYWDS NMR, RECEPTOR OLIGOMERIZATION, EPH RECEPTORS, TYROSINE KEYWDS 2 PHOSPHORYLATION, SIGNAL TRANSDUCTION, TYROSINE-PROTEIN KEYWDS 3 KINASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.SMALLA,P.SCHMIEDER,M.KELLY,A.TER LAAK,G.KRAUSE,L.BALL, AUTHOR 2 M.WAHL,P.BORK,H.OSCHKINAT REVDAT 2 24-FEB-09 1SGG 1 VERSN REVDAT 1 06-OCT-99 1SGG 0 JRNL AUTH M.SMALLA,P.SCHMIEDER,M.KELLY,A.TER LAAK,G.KRAUSE, JRNL AUTH 2 L.BALL,M.WAHL,P.BORK,H.OSCHKINAT JRNL TITL SOLUTION STRUCTURE OF THE RECEPTOR TYROSINE KINASE JRNL TITL 2 EPHB2 SAM DOMAIN AND IDENTIFICATION OF TWO JRNL TITL 3 DISTINCT HOMOTYPIC INTERACTION SITES. JRNL REF PROTEIN SCI. V. 8 1954 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10548040 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SGG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY, 2D-TOCSY, 1H-15 REMARK 210 NOESY, 1H-13C NOESY, HCCH- REMARK 210 TOCSY, HCCH-COSY, CBCANNH, REMARK 210 CBCA (CO)NNH, CC(CO)NNH-TOCSY, REMARK 210 HBHA(CO)NNH, HC(CO)NNH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX600, DRX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED EPHB2 SAM DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 74 REMARK 465 GLN A 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 21 75.91 56.54 REMARK 500 1 GLN A 24 37.65 -91.66 REMARK 500 1 LYS A 26 -81.79 -73.23 REMARK 500 1 PHE A 34 44.94 -95.42 REMARK 500 1 ASP A 38 -76.22 -178.88 REMARK 500 1 SER A 41 42.25 -91.47 REMARK 500 1 GLN A 42 43.37 -160.51 REMARK 500 1 THR A 44 -150.02 -152.26 REMARK 500 1 VAL A 53 46.43 -89.22 REMARK 500 2 THR A 8 41.36 -90.08 REMARK 500 2 LYS A 21 76.60 53.22 REMARK 500 2 TYR A 25 21.72 -142.54 REMARK 500 2 LYS A 26 -80.80 -65.87 REMARK 500 2 PHE A 34 55.43 -95.66 REMARK 500 2 THR A 35 -61.45 -93.14 REMARK 500 2 PHE A 37 41.64 -92.01 REMARK 500 2 ASP A 38 -79.43 -130.57 REMARK 500 2 SER A 41 44.02 -90.58 REMARK 500 2 GLN A 42 74.34 -163.62 REMARK 500 2 MET A 43 -158.05 -137.29 REMARK 500 2 THR A 44 -152.46 -175.07 REMARK 500 2 VAL A 53 42.71 -91.36 REMARK 500 3 LYS A 21 77.91 53.41 REMARK 500 3 TYR A 25 17.50 -144.39 REMARK 500 3 LYS A 26 -80.37 -66.07 REMARK 500 3 PHE A 34 56.25 -94.53 REMARK 500 3 PHE A 37 42.09 -92.41 REMARK 500 3 ASP A 38 -79.06 -133.28 REMARK 500 3 SER A 41 41.01 -95.46 REMARK 500 3 GLN A 42 45.51 -155.22 REMARK 500 3 THR A 44 -164.68 -117.11 REMARK 500 3 VAL A 53 44.87 -94.60 REMARK 500 4 LYS A 21 78.45 53.83 REMARK 500 4 GLN A 24 47.60 -86.09 REMARK 500 4 LYS A 26 -82.52 -77.56 REMARK 500 4 PHE A 34 55.79 -93.65 REMARK 500 4 PHE A 37 41.60 -92.44 REMARK 500 4 ASP A 38 -79.50 -130.72 REMARK 500 4 SER A 41 37.00 -93.66 REMARK 500 4 GLN A 42 47.89 -156.44 REMARK 500 4 THR A 44 -164.07 -109.84 REMARK 500 4 VAL A 53 42.93 -90.87 REMARK 500 5 THR A 8 38.50 -91.39 REMARK 500 5 LYS A 21 89.84 55.28 REMARK 500 5 PHE A 34 42.58 -92.35 REMARK 500 5 PHE A 37 42.71 -92.46 REMARK 500 5 ASP A 38 -81.15 -130.79 REMARK 500 5 SER A 41 37.82 -94.11 REMARK 500 5 GLN A 42 52.78 -166.99 REMARK 500 5 VAL A 53 49.24 -94.99 REMARK 500 6 THR A 8 39.99 -90.46 REMARK 500 6 LYS A 21 77.13 50.46 REMARK 500 6 SER A 23 32.06 -92.17 REMARK 500 6 GLN A 24 26.27 -149.84 REMARK 500 6 LYS A 26 -80.64 -66.38 REMARK 500 6 PHE A 34 53.96 -93.68 REMARK 500 6 THR A 35 -64.78 -100.91 REMARK 500 6 ASP A 38 -75.81 -178.99 REMARK 500 6 SER A 41 37.44 -92.12 REMARK 500 6 GLN A 42 32.77 -169.13 REMARK 500 6 MET A 43 -167.58 -110.60 REMARK 500 6 THR A 44 -149.03 -141.13 REMARK 500 7 LYS A 26 -80.20 -60.89 REMARK 500 7 PHE A 34 56.57 -93.32 REMARK 500 7 THR A 35 -62.06 -99.75 REMARK 500 7 ASP A 38 -75.06 -178.39 REMARK 500 7 SER A 41 39.16 -92.17 REMARK 500 7 GLN A 42 30.71 -169.52 REMARK 500 7 THR A 44 -149.58 -127.63 REMARK 500 7 VAL A 53 43.52 -91.08 REMARK 500 8 LYS A 21 78.45 52.51 REMARK 500 8 MET A 22 -59.18 -126.79 REMARK 500 8 SER A 23 -58.62 64.29 REMARK 500 8 GLN A 24 36.05 -90.41 REMARK 500 8 LYS A 26 -80.46 -53.11 REMARK 500 8 PHE A 34 58.92 -101.12 REMARK 500 8 THR A 35 -63.48 -100.20 REMARK 500 8 ASP A 38 -76.52 -178.04 REMARK 500 8 SER A 41 43.52 -89.80 REMARK 500 8 GLN A 42 31.53 -169.78 REMARK 500 8 THR A 44 -156.46 -131.60 REMARK 500 8 VAL A 53 43.13 -90.84 REMARK 500 9 THR A 8 42.73 -87.63 REMARK 500 9 LYS A 26 -80.95 -72.26 REMARK 500 9 PHE A 34 59.05 -94.84 REMARK 500 9 PHE A 37 41.52 -92.77 REMARK 500 9 ASP A 38 -78.91 -131.07 REMARK 500 9 SER A 41 43.58 -92.90 REMARK 500 9 GLN A 42 28.14 -158.80 REMARK 500 9 THR A 44 -155.47 -100.97 REMARK 500 10 LYS A 21 77.30 54.77 REMARK 500 10 GLN A 24 48.84 -85.05 REMARK 500 10 LYS A 26 -82.75 -78.35 REMARK 500 10 PHE A 34 52.13 -94.44 REMARK 500 10 THR A 35 -62.29 -100.21 REMARK 500 10 ASP A 38 -69.94 177.24 REMARK 500 10 SER A 41 44.06 -90.14 REMARK 500 10 GLN A 42 51.19 -174.60 REMARK 500 10 THR A 44 -155.03 -134.46 REMARK 500 10 VAL A 53 43.10 -90.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 50 0.22 SIDE_CHAIN REMARK 500 1 ARG A 70 0.31 SIDE_CHAIN REMARK 500 2 ARG A 50 0.16 SIDE_CHAIN REMARK 500 2 ARG A 70 0.19 SIDE_CHAIN REMARK 500 3 ARG A 50 0.24 SIDE_CHAIN REMARK 500 3 ARG A 70 0.31 SIDE_CHAIN REMARK 500 4 ARG A 50 0.17 SIDE_CHAIN REMARK 500 4 ARG A 70 0.20 SIDE_CHAIN REMARK 500 5 ARG A 50 0.30 SIDE_CHAIN REMARK 500 5 ARG A 70 0.25 SIDE_CHAIN REMARK 500 6 ARG A 50 0.32 SIDE_CHAIN REMARK 500 6 ARG A 70 0.28 SIDE_CHAIN REMARK 500 7 ARG A 50 0.22 SIDE_CHAIN REMARK 500 7 ARG A 70 0.22 SIDE_CHAIN REMARK 500 8 ARG A 50 0.32 SIDE_CHAIN REMARK 500 8 ARG A 70 0.29 SIDE_CHAIN REMARK 500 9 ARG A 50 0.31 SIDE_CHAIN REMARK 500 9 ARG A 70 0.21 SIDE_CHAIN REMARK 500 10 ARG A 50 0.18 SIDE_CHAIN REMARK 500 10 ARG A 70 0.23 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1SGG A 1 75 UNP P28693 EPHB2_CHICK 924 998 SEQRES 1 A 75 ASP ARG THR ILE PRO ASP TYR THR SER PHE ASN THR VAL SEQRES 2 A 75 ASP GLU TRP LEU ASP ALA ILE LYS MET SER GLN TYR LYS SEQRES 3 A 75 GLU SER PHE ALA SER ALA GLY PHE THR THR PHE ASP ILE SEQRES 4 A 75 VAL SER GLN MET THR VAL GLU ASP ILE LEU ARG VAL GLY SEQRES 5 A 75 VAL THR LEU ALA GLY HIS GLN LYS LYS ILE LEU ASN SER SEQRES 6 A 75 ILE GLN VAL MET ARG ALA GLN MET ASN GLN HELIX 1 1 THR A 12 ILE A 20 1 9 HELIX 2 2 SER A 23 SER A 31 1 9 HELIX 3 3 ASP A 38 GLN A 42 5 5 HELIX 4 4 VAL A 45 VAL A 51 1 7 HELIX 5 5 HIS A 58 MET A 73 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 216 0 0 5 0 0 0 6 0 0 0 6 END