HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-FEB-04 1SED TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YHAL FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YHAI; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: APC1180; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YHAI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, YHAI, FOUR HELIX BUNDLE, KEYWDS 2 COLIED-COIL, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 1SED 1 VERSN REVDAT 3 24-FEB-09 1SED 1 VERSN REVDAT 2 18-JAN-05 1SED 1 AUTHOR KEYWDS REMARK REVDAT 1 25-MAY-04 1SED 0 JRNL AUTH Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS JRNL TITL THE CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN YHAI, JRNL TITL 2 APC1180 FROM BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 400380.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 41114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5989 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 645 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 2.55000 REMARK 3 B13 (A**2) : 2.29000 REMARK 3 B23 (A**2) : 2.84000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.74 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.310 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 41.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIGAND.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SED COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-04. REMARK 100 THE RCSB ID CODE IS RCSB021636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282, 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.240 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FLUORIDE, PEG 3350, 2-METHYL 2, REMARK 280 4 PENTANEDIOL, SODIUM CACODYLATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN, BUT BASED ON THE STRUCTURE, A TRIMER AS FOUND IN REMARK 300 THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -281.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLY C 114 REMARK 465 SER C 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL C 806 O HOH C 822 2.17 REMARK 500 O3 GOL B 803 O HOH B 882 2.17 REMARK 500 O1 GOL B 804 O HOH B 882 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 51.17 38.85 REMARK 500 TYR B 98 51.33 38.17 REMARK 500 PHE C 68 32.19 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 867 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH B 873 DISTANCE = 5.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 55 OE1 105.4 REMARK 620 3 GLU A 55 OE2 104.4 54.2 REMARK 620 4 ASP C 107 OD1 137.1 87.8 116.0 REMARK 620 5 ASP C 107 OD2 86.7 126.6 168.4 54.4 REMARK 620 6 HIS C 111 NE2 94.9 134.6 81.7 104.3 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE2 REMARK 620 2 GLU B 55 OE1 109.1 REMARK 620 3 GLU B 55 OE2 103.7 56.7 REMARK 620 4 ASP A 107 OD1 88.1 125.6 166.7 REMARK 620 5 ASP A 107 OD2 135.6 79.6 116.1 55.5 REMARK 620 6 HIS A 111 NE2 94.4 136.5 82.9 90.1 108.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 52 OE2 REMARK 620 2 GLU C 55 OE1 109.7 REMARK 620 3 GLU C 55 OE2 99.9 54.1 REMARK 620 4 HIS B 111 NE2 100.1 79.3 133.2 REMARK 620 5 ASP B 107 OD2 137.9 108.3 88.1 104.1 REMARK 620 6 ASP B 107 OD1 86.5 163.7 123.0 100.2 55.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 77 O REMARK 620 2 HOH B 869 O 134.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1180 RELATED DB: TARGETDB DBREF 1SED A 1 113 UNP O07517 YHAI_BACSU 1 113 DBREF 1SED B 1 113 UNP O07517 YHAI_BACSU 1 113 DBREF 1SED C 1 113 UNP O07517 YHAI_BACSU 1 113 SEQADV 1SED GLY A -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS A 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY A 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER A 115 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY B -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS B 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY B 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER B 115 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY C -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS C 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY C 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER C 115 UNP O07517 CLONING ARTIFACT SEQRES 1 A 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 A 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 A 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 A 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 A 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 A 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 A 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 A 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 A 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER SEQRES 1 B 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 B 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 B 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 B 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 B 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 B 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 B 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 B 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 B 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER SEQRES 1 C 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 C 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 C 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 C 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 C 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 C 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 C 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 C 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 C 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER HET ZN A 501 1 HET ZN B 502 1 HET ZN C 503 1 HET NA A 504 1 HET NA B 505 1 HET NA C 506 1 HET MPD A 701 8 HET MPD A 702 8 HET MPD A 703 8 HET MPD B 704 8 HET MPD B 705 8 HET MPD B 706 8 HET MPD C 707 8 HET MPD C 708 8 HET MPD C 709 8 HET MPD C 710 8 HET MPD C 711 8 HET MPD A 712 8 HET MPD B 713 8 HET MPD A 714 8 HET MPD A 715 8 HET MPD B 716 8 HET MPD C 717 8 HET GOL A 801 6 HET GOL A 802 6 HET GOL B 803 6 HET GOL B 804 6 HET GOL C 805 6 HET GOL C 806 6 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 3(ZN 2+) FORMUL 7 NA 3(NA 1+) FORMUL 10 MPD 17(C6 H14 O2) FORMUL 27 GOL 6(C3 H8 O3) FORMUL 33 HOH *233(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 TYR A 27 LYS A 36 1 10 HELIX 3 3 SER A 39 GLN A 63 1 25 HELIX 4 4 PHE A 68 LEU A 79 1 12 HELIX 5 5 ASP A 84 GLN A 95 1 12 HELIX 6 6 TYR A 98 ASP A 113 1 16 HELIX 7 7 MET B 4 LYS B 20 1 17 HELIX 8 8 TYR B 27 LYS B 36 1 10 HELIX 9 9 SER B 39 GLN B 63 1 25 HELIX 10 10 PHE B 68 LEU B 79 1 12 HELIX 11 11 ASP B 84 GLN B 95 1 12 HELIX 12 12 TYR B 98 ASP B 113 1 16 HELIX 13 13 SER C 3 LYS C 20 1 18 HELIX 14 14 TYR C 27 LYS C 36 1 10 HELIX 15 15 SER C 39 GLN C 63 1 25 HELIX 16 16 PHE C 68 LEU C 79 1 12 HELIX 17 17 ASP C 84 GLN C 95 1 12 HELIX 18 18 TYR C 98 ASP C 113 1 16 LINK ZN ZN A 501 OE1 GLU A 52 1555 1555 2.09 LINK ZN ZN A 501 OE1 GLU A 55 1555 1555 2.00 LINK ZN ZN A 501 OE2 GLU A 55 1555 1555 2.63 LINK ZN ZN B 502 OE2 GLU B 52 1555 1555 2.25 LINK ZN ZN B 502 OE1 GLU B 55 1555 1555 2.04 LINK ZN ZN B 502 OE2 GLU B 55 1555 1555 2.46 LINK ZN ZN C 503 OE2 GLU C 52 1555 1555 2.03 LINK ZN ZN C 503 OE1 GLU C 55 1555 1555 2.53 LINK ZN ZN C 503 OE2 GLU C 55 1555 1555 2.21 LINK ZN ZN A 501 OD1 ASP C 107 1555 1444 2.29 LINK ZN ZN A 501 OD2 ASP C 107 1555 1444 2.50 LINK ZN ZN A 501 NE2 HIS C 111 1555 1444 2.06 LINK ZN ZN B 502 OD1 ASP A 107 1555 1556 2.46 LINK ZN ZN B 502 OD2 ASP A 107 1555 1556 2.16 LINK ZN ZN B 502 NE2 HIS A 111 1555 1556 2.05 LINK ZN ZN C 503 NE2 HIS B 111 1555 1565 2.08 LINK ZN ZN C 503 OD2 ASP B 107 1555 1565 2.09 LINK ZN ZN C 503 OD1 ASP B 107 1555 1565 2.49 LINK O GLY A 77 NA NA A 504 1555 1555 2.76 LINK O GLY B 77 NA NA B 505 1555 1555 2.73 LINK O GLY C 77 NA NA C 506 1555 1555 2.76 LINK NA NA B 505 O HOH B 869 1555 1555 2.85 SITE 1 AC1 4 GLU A 52 GLU A 55 ASP C 107 HIS C 111 SITE 1 AC2 4 ASP A 107 HIS A 111 GLU B 52 GLU B 55 SITE 1 AC3 4 ASP B 107 HIS B 111 GLU C 52 GLU C 55 SITE 1 AC4 4 GLY A 77 GOL A 801 GOL A 802 HOH A 875 SITE 1 AC5 4 GLY B 77 GOL B 803 GOL B 804 HOH B 869 SITE 1 AC6 3 GLY C 77 GOL C 805 GOL C 806 SITE 1 AC7 4 ASP A 51 HOH A 864 HIS C 111 HOH C 824 SITE 1 AC8 3 ASP A 69 ALA A 73 MPD A 715 SITE 1 AC9 4 VAL A 85 MET A 109 PHE A 112 ASP A 113 SITE 1 BC1 6 HIS A 111 PHE A 112 HOH A 856 MET B 47 SITE 2 BC1 6 ASP B 51 HOH B 865 SITE 1 BC2 2 ASP B 69 PHE B 112 SITE 1 BC3 5 ALA B 76 VAL B 85 HIS B 86 PHE B 112 SITE 2 BC3 5 ASP B 113 SITE 1 BC4 3 ARG A 10 GLN C 16 ILE C 34 SITE 1 BC5 6 HIS B 111 PHE B 112 HOH B 822 MET C 47 SITE 2 BC5 6 ASP C 51 HOH C 820 SITE 1 BC6 5 ALA C 76 HIS C 86 PHE C 112 ASP C 113 SITE 2 BC6 5 MPD C 710 SITE 1 BC7 4 ASP C 69 ALA C 73 PHE C 112 MPD C 709 SITE 1 BC8 4 LYS B 61 HOH B 830 GLU C 56 HOH C 880 SITE 1 BC9 4 GLU A 56 HOH A 862 VAL C 66 HOH C 833 SITE 1 CC1 4 GLN B 16 ILE B 34 ASP B 35 ARG C 10 SITE 1 CC2 4 LYS A 70 LYS C 61 ALA C 62 GLY C 64 SITE 1 CC3 4 ASP A 69 LYS A 70 ALA A 73 MPD A 702 SITE 1 CC4 5 LYS A 61 ALA A 62 GLN A 63 GLY A 64 SITE 2 CC4 5 LYS B 70 SITE 1 CC5 5 LYS B 61 ALA B 62 GLY B 64 LYS C 70 SITE 2 CC5 5 LEU C 74 SITE 1 CC6 5 ALA A 76 GLY A 77 LEU A 79 NA A 504 SITE 2 CC6 5 HOH A 874 SITE 1 CC7 8 GLY A 77 GLN A 78 NA A 504 HOH A 874 SITE 2 CC7 8 HOH A 875 GLN C 63 GLY C 64 PHE C 65 SITE 1 CC8 6 ALA B 76 GLY B 77 LEU B 79 NA B 505 SITE 2 CC8 6 GOL B 804 HOH B 882 SITE 1 CC9 8 GLN A 63 GLY A 64 PHE A 65 GLY B 77 SITE 2 CC9 8 NA B 505 GOL B 803 HOH B 880 HOH B 882 SITE 1 DC1 7 ALA C 76 GLY C 77 LEU C 79 GLU C 81 SITE 2 DC1 7 NA C 506 HOH C 808 HOH C 822 SITE 1 DC2 8 GLN B 63 GLY B 64 PHE B 65 GLY C 77 SITE 2 DC2 8 GLN C 78 NA C 506 HOH C 807 HOH C 822 CRYST1 56.784 64.550 64.503 111.37 107.19 107.13 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017611 0.005428 0.009357 0.00000 SCALE2 0.000000 0.016211 0.009224 0.00000 SCALE3 0.000000 0.000000 0.018671 0.00000 MASTER 446 0 29 18 0 0 41 6 0 0 0 27 END