HEADER TRANSCRIPTION/DNA 19-MAY-99 1S9M TITLE STRUCTURAL MODEL OF THE P170R HUMAN SOX9-DNA COMPLEX CAVEAT 1S9M INCORRECT CHIRALITY AT C3*(A5) AND C3*(G9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR SOX9); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 TISSUE: TESTIS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES KEYWDS COMPLEX (DNA-BINDING PROTEIN/DNA) EXPDTA THEORETICAL MODEL AUTHOR S.RANGANATHAN,S.MCDOWALL,A.ARGENTARO,P.WELLER,S.MERTIN, AUTHOR 2 S.MANSOUR,J.TOLMIE,V.HARLEY REVDAT 4 01-APR-03 1S9M 1 JRNL REVDAT 3 03-MAY-00 1S9M 1 DBREF SEQADV REVDAT 2 15-JAN-00 1S9M 1 JRNL HEADER REVDAT 1 24-MAY-99 1S9M 0 JRNL AUTH S.MCDOWALL,A.ARGENTARO,S.RANGANATHAN,P.WELLER, JRNL AUTH 2 S.MERTIN,S.MANSOUR,J.TOLMIE,V.HARLEY JRNL TITL FUNCTIONAL AND STRUCTURAL STUDIES OF WILD TYPE JRNL TITL 2 SOX9 AND MUTATIONS CAUSING CAMPOMELIC DYSPLASIA. JRNL REF J.BIOL.CHEM. V. 274 24023 1999 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.H.WERNER,J.R.HUTH,A.M.GRONENBORN,G.M.CLORE REMARK 1 TITL THE MOLECULAR BASIS OF HUMAN 46X,Y SEX REVERSAL REMARK 1 TITL 2 REVEALED FROM THE THREE-DIMENSIONAL SOLUTION REMARK 1 TITL 3 STRUCTURE OF THE HUMAN SRY-DNA COMPLEX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 81 704 1995 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ITERATIVE REFINEMENT USING SIMULATED REMARK 3 ANNEALING CARRIED OUT FOR "HOT SPOTS" IDENTIFIED BY PROCHECK REMARK 4 REMARK 4 1S9M COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-1999. REMARK 100 THE RCSB ID CODE IS RCSB001086. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE MUTANT SOX9 PROTEIN WAS BUILT BY HOMOLOGY MODELLING REMARK 220 WHILE THE DNA COORDINATES WERE TRANSFERRED FROM THE REMARK 220 HUMAN SRY-DNA COMPLEX (1HRY) REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. DBREF 1S9M A 1 77 UNP P48436 SOX9_HUMAN 101 177 SEQADV 1S9M ARG A 70 UNP P48436 PRO 170 CONFLICT SEQRES 1 A 77 ASN LYS PRO HIS VAL LYS ARG PRO MET ASN ALA PHE MET SEQRES 2 A 77 VAL TRP ALA GLN ALA ALA ARG ARG LYS LEU ALA ASP GLN SEQRES 3 A 77 TYR PRO HIS LEU HIS ASN ALA GLU LEU SER LYS THR LEU SEQRES 4 A 77 GLY LYS LEU TRP ARG LEU LEU ASN GLU SER GLU LYS ARG SEQRES 5 A 77 PRO PHE VAL GLU GLU ALA GLU ARG LEU ARG VAL GLN HIS SEQRES 6 A 77 LYS LYS ASP HIS ARG ASP TYR LYS TYR GLN PRO ARG SEQRES 1 B 8 G C A C A A A C SEQRES 1 C 8 G T T T G T G C HELIX 1 1 ALA A 11 TYR A 27 1 17 HELIX 2 2 GLU A 34 ARG A 44 1 11 HELIX 3 3 GLU A 48 HIS A 69 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 40 0 0 3 0 0 0 6 0 0 0 8 END