HEADER REPLICATION, RNA BINDING PROTEIN 15-JAN-04 1S48 TITLE CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE CONSTRUCT 1 TITLE 2 (RESIDUES 71-679) FROM BVDV COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11099; SOURCE 4 GENE: NS5B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE, PRIMER INDEPENDENT INITIATION, DE NOVO INITIATION, RNA KEYWDS 2 VIRUS, BVDV, BOVINE VIRAL DIARRHEA VIRUS, REPLICATION, RNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.H.CHOI,J.M.GROARKE,D.C.YOUNG,R.J.KUHN,J.L.SMITH,D.C.PEVEAR, AUTHOR 2 M.G.ROSSMANN REVDAT 3 13-JUL-11 1S48 1 VERSN REVDAT 2 24-FEB-09 1S48 1 VERSN REVDAT 1 06-APR-04 1S48 0 JRNL AUTH K.H.CHOI,J.M.GROARKE,D.C.YOUNG,R.J.KUHN,J.L.SMITH, JRNL AUTH 2 D.C.PEVEAR,M.G.ROSSMANN JRNL TITL THE STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE FROM JRNL TITL 2 BOVINE VIRAL DIARRHEA VIRUS ESTABLISHES THE ROLE OF GTP IN JRNL TITL 3 DE NOVO INITIATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 4425 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15070734 JRNL DOI 10.1073/PNAS.0400660101 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 109079.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 45123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 4387 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6355 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 674 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.15000 REMARK 3 B22 (A**2) : -3.29000 REMARK 3 B33 (A**2) : 10.43000 REMARK 3 B12 (A**2) : 12.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.03 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.610; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 16.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47219 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD AND SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, ISOPROPANOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.39800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.19900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.39800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.19900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.39800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 33.19900 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.39800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.19900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 356.32962 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 71 REMARK 465 TYR A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 LEU A 75 REMARK 465 LYS A 76 REMARK 465 ASP A 77 REMARK 465 PHE A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 GLU A 82 REMARK 465 GLU A 83 REMARK 465 LYS A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 ARG A 87 REMARK 465 VAL A 88 REMARK 465 LYS A 89 REMARK 465 ASP A 90 REMARK 465 THR A 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 222 OE1 GLU A 226 2.17 REMARK 500 O ALA A 540 N SER A 576 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 128 OE1 GLU A 128 4675 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 182 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU A 291 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 LYS A 293 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 GLN A 402 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 ASP A 531 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 SER A 533 N - CA - C ANGL. DEV. = -28.8 DEGREES REMARK 500 THR A 539 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 LEU A 646 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 HIS A 673 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 96 2.29 -58.65 REMARK 500 PRO A 154 69.13 -53.86 REMARK 500 LYS A 172 -56.82 -129.35 REMARK 500 LYS A 219 17.07 -60.02 REMARK 500 ALA A 221 165.86 -32.02 REMARK 500 SER A 236 -73.20 -99.23 REMARK 500 GLU A 237 23.27 -65.61 REMARK 500 ARG A 252 -165.28 -107.08 REMARK 500 ASP A 277 96.10 -43.04 REMARK 500 LEU A 278 57.66 -91.37 REMARK 500 PRO A 290 -176.69 -63.73 REMARK 500 GLU A 291 41.87 -100.34 REMARK 500 LYS A 293 -50.75 -160.67 REMARK 500 GLN A 308 49.24 33.29 REMARK 500 GLN A 309 -89.11 -60.28 REMARK 500 ASN A 324 12.28 -155.69 REMARK 500 GLN A 402 -152.10 -115.71 REMARK 500 SER A 405 -32.95 -37.40 REMARK 500 CYS A 446 86.26 -150.11 REMARK 500 GLU A 483 -1.72 73.12 REMARK 500 ASP A 508 29.60 -76.12 REMARK 500 SER A 532 47.90 -88.47 REMARK 500 SER A 533 30.03 -88.81 REMARK 500 GLU A 535 148.16 -36.21 REMARK 500 THR A 538 -138.54 -90.72 REMARK 500 GLU A 572 33.84 -89.82 REMARK 500 LEU A 613 -6.41 -59.64 REMARK 500 LYS A 625 15.10 -67.48 REMARK 500 GLU A 642 128.44 -38.81 REMARK 500 LEU A 646 4.87 -58.41 REMARK 500 LYS A 665 153.11 -45.99 REMARK 500 GLN A 676 103.89 -57.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 531 -10.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 291 22.6 L L OUTSIDE RANGE REMARK 500 GLN A 402 46.0 L L OUTSIDE RANGE REMARK 500 ASP A 531 22.5 L L OUTSIDE RANGE REMARK 500 SER A 533 48.9 L L OUTSIDE RANGE REMARK 500 HIS A 673 22.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S49 RELATED DB: PDB REMARK 900 RELATED ID: 1S4F RELATED DB: PDB DBREF 1S48 A 71 679 UNP P19711 POLG_BVDVN 3340 3948 SEQADV 1S48 MSE A 115 UNP P19711 MET 3384 MODIFIED RESIDUE SEQADV 1S48 MSE A 143 UNP P19711 MET 3412 MODIFIED RESIDUE SEQADV 1S48 MSE A 302 UNP P19711 MET 3571 MODIFIED RESIDUE SEQADV 1S48 MSE A 384 UNP P19711 MET 3653 MODIFIED RESIDUE SEQADV 1S48 MSE A 416 UNP P19711 MET 3685 MODIFIED RESIDUE SEQADV 1S48 MSE A 422 UNP P19711 MET 3691 MODIFIED RESIDUE SEQADV 1S48 MSE A 423 UNP P19711 MET 3692 MODIFIED RESIDUE SEQADV 1S48 MSE A 467 UNP P19711 MET 3736 MODIFIED RESIDUE SEQADV 1S48 MSE A 485 UNP P19711 MET 3754 MODIFIED RESIDUE SEQADV 1S48 MSE A 514 UNP P19711 MET 3783 MODIFIED RESIDUE SEQADV 1S48 MSE A 526 UNP P19711 MET 3795 MODIFIED RESIDUE SEQADV 1S48 MSE A 552 UNP P19711 MET 3821 MODIFIED RESIDUE SEQRES 1 A 609 ALA TYR LEU LYS LEU LYS ASP PHE ILE GLU GLU GLU GLU SEQRES 2 A 609 LYS LYS PRO ARG VAL LYS ASP THR VAL ILE ARG GLU HIS SEQRES 3 A 609 ASN LYS TRP ILE LEU LYS LYS ILE ARG PHE GLN GLY ASN SEQRES 4 A 609 LEU ASN THR LYS LYS MSE LEU ASN PRO GLY LYS LEU SER SEQRES 5 A 609 GLU GLN LEU ASP ARG GLU GLY ARG LYS ARG ASN ILE TYR SEQRES 6 A 609 ASN HIS GLN ILE GLY THR ILE MSE SER SER ALA GLY ILE SEQRES 7 A 609 ARG LEU GLU LYS LEU PRO ILE VAL ARG ALA GLN THR ASP SEQRES 8 A 609 THR LYS THR PHE HIS GLU ALA ILE ARG ASP LYS ILE ASP SEQRES 9 A 609 LYS SER GLU ASN ARG GLN ASN PRO GLU LEU HIS ASN LYS SEQRES 10 A 609 LEU LEU GLU ILE PHE HIS THR ILE ALA GLN PRO THR LEU SEQRES 11 A 609 LYS HIS THR TYR GLY GLU VAL THR TRP GLU GLN LEU GLU SEQRES 12 A 609 ALA GLY VAL ASN ARG LYS GLY ALA ALA GLY PHE LEU GLU SEQRES 13 A 609 LYS LYS ASN ILE GLY GLU VAL LEU ASP SER GLU LYS HIS SEQRES 14 A 609 LEU VAL GLU GLN LEU VAL ARG ASP LEU LYS ALA GLY ARG SEQRES 15 A 609 LYS ILE LYS TYR TYR GLU THR ALA ILE PRO LYS ASN GLU SEQRES 16 A 609 LYS ARG ASP VAL SER ASP ASP TRP GLN ALA GLY ASP LEU SEQRES 17 A 609 VAL VAL GLU LYS ARG PRO ARG VAL ILE GLN TYR PRO GLU SEQRES 18 A 609 ALA LYS THR ARG LEU ALA ILE THR LYS VAL MSE TYR ASN SEQRES 19 A 609 TRP VAL LYS GLN GLN PRO VAL VAL ILE PRO GLY TYR GLU SEQRES 20 A 609 GLY LYS THR PRO LEU PHE ASN ILE PHE ASP LYS VAL ARG SEQRES 21 A 609 LYS GLU TRP ASP SER PHE ASN GLU PRO VAL ALA VAL SER SEQRES 22 A 609 PHE ASP THR LYS ALA TRP ASP THR GLN VAL THR SER LYS SEQRES 23 A 609 ASP LEU GLN LEU ILE GLY GLU ILE GLN LYS TYR TYR TYR SEQRES 24 A 609 LYS LYS GLU TRP HIS LYS PHE ILE ASP THR ILE THR ASP SEQRES 25 A 609 HIS MSE THR GLU VAL PRO VAL ILE THR ALA ASP GLY GLU SEQRES 26 A 609 VAL TYR ILE ARG ASN GLY GLN ARG GLY SER GLY GLN PRO SEQRES 27 A 609 ASP THR SER ALA GLY ASN SER MSE LEU ASN VAL LEU THR SEQRES 28 A 609 MSE MSE TYR ALA PHE CYS GLU SER THR GLY VAL PRO TYR SEQRES 29 A 609 LYS SER PHE ASN ARG VAL ALA ARG ILE HIS VAL CYS GLY SEQRES 30 A 609 ASP ASP GLY PHE LEU ILE THR GLU LYS GLY LEU GLY LEU SEQRES 31 A 609 LYS PHE ALA ASN LYS GLY MSE GLN ILE LEU HIS GLU ALA SEQRES 32 A 609 GLY LYS PRO GLN LYS ILE THR GLU GLY GLU LYS MSE LYS SEQRES 33 A 609 VAL ALA TYR ARG PHE GLU ASP ILE GLU PHE CYS SER HIS SEQRES 34 A 609 THR PRO VAL PRO VAL ARG TRP SER ASP ASN THR SER SER SEQRES 35 A 609 HIS MSE ALA GLY ARG ASP THR ALA VAL ILE LEU SER LYS SEQRES 36 A 609 MSE ALA THR ARG LEU ASP SER SER GLY GLU ARG GLY THR SEQRES 37 A 609 THR ALA TYR GLU LYS ALA VAL ALA PHE SER PHE LEU LEU SEQRES 38 A 609 MSE TYR SER TRP ASN PRO LEU VAL ARG ARG ILE CYS LEU SEQRES 39 A 609 LEU VAL LEU SER GLN GLN PRO GLU THR ASP PRO SER LYS SEQRES 40 A 609 HIS ALA THR TYR TYR TYR LYS GLY ASP PRO ILE GLY ALA SEQRES 41 A 609 TYR LYS ASP VAL ILE GLY ARG ASN LEU SER GLU LEU LYS SEQRES 42 A 609 ARG THR GLY PHE GLU LYS LEU ALA ASN LEU ASN LEU SER SEQRES 43 A 609 LEU SER THR LEU GLY VAL TRP THR LYS HIS THR SER LYS SEQRES 44 A 609 ARG ILE ILE GLN ASP CYS VAL ALA ILE GLY LYS GLU GLU SEQRES 45 A 609 GLY ASN TRP LEU VAL LYS PRO ASP ARG LEU ILE SER SER SEQRES 46 A 609 LYS THR GLY HIS LEU TYR ILE PRO ASP LYS GLY PHE THR SEQRES 47 A 609 LEU GLN GLY LYS HIS TYR GLU GLN LEU GLN LEU MODRES 1S48 MSE A 115 MET SELENOMETHIONINE MODRES 1S48 MSE A 143 MET SELENOMETHIONINE MODRES 1S48 MSE A 302 MET SELENOMETHIONINE MODRES 1S48 MSE A 384 MET SELENOMETHIONINE MODRES 1S48 MSE A 416 MET SELENOMETHIONINE MODRES 1S48 MSE A 422 MET SELENOMETHIONINE MODRES 1S48 MSE A 423 MET SELENOMETHIONINE MODRES 1S48 MSE A 467 MET SELENOMETHIONINE MODRES 1S48 MSE A 485 MET SELENOMETHIONINE MODRES 1S48 MSE A 514 MET SELENOMETHIONINE MODRES 1S48 MSE A 526 MET SELENOMETHIONINE MODRES 1S48 MSE A 552 MET SELENOMETHIONINE HET MSE A 115 8 HET MSE A 143 8 HET MSE A 302 8 HET MSE A 384 8 HET MSE A 416 8 HET MSE A 422 8 HET MSE A 423 8 HET MSE A 467 8 HET MSE A 485 8 HET MSE A 514 8 HET MSE A 526 8 HET MSE A 552 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) HELIX 1 1 ARG A 94 LYS A 102 5 9 HELIX 2 2 ASN A 136 ALA A 146 1 11 HELIX 3 3 ARG A 149 LEU A 153 5 5 HELIX 4 4 ASP A 161 LYS A 172 1 12 HELIX 5 5 GLU A 183 THR A 194 1 12 HELIX 6 6 GLN A 197 LYS A 201 5 5 HELIX 7 7 THR A 208 GLU A 213 1 6 HELIX 8 8 GLY A 231 SER A 236 1 6 HELIX 9 9 GLU A 237 ALA A 250 1 14 HELIX 10 10 VAL A 269 ALA A 275 1 7 HELIX 11 11 LYS A 293 MSE A 302 1 10 HELIX 12 12 MSE A 302 LYS A 307 1 6 HELIX 13 13 TYR A 316 THR A 320 5 5 HELIX 14 14 PRO A 321 PHE A 323 5 3 HELIX 15 15 ASN A 324 SER A 335 1 12 HELIX 16 16 ALA A 348 VAL A 353 1 6 HELIX 17 17 THR A 354 TYR A 369 1 16 HELIX 18 18 LYS A 370 GLU A 372 5 3 HELIX 19 19 TRP A 373 MSE A 384 1 12 HELIX 20 20 ASP A 409 GLY A 431 1 23 HELIX 21 21 PRO A 433 LYS A 435 5 3 HELIX 22 22 SER A 436 VAL A 440 1 5 HELIX 23 23 LYS A 456 ALA A 473 1 18 HELIX 24 24 ARG A 490 ILE A 494 5 5 HELIX 25 25 ASP A 518 ARG A 529 1 12 HELIX 26 26 TYR A 541 SER A 554 1 14 HELIX 27 27 ASN A 556 GLN A 569 1 14 HELIX 28 28 ASP A 586 GLY A 596 1 11 HELIX 29 29 ASN A 598 SER A 600 5 3 HELIX 30 30 GLY A 606 ASN A 614 1 9 HELIX 31 31 LEU A 615 LEU A 620 1 6 HELIX 32 32 HIS A 626 LYS A 640 1 15 HELIX 33 33 ASP A 650 GLY A 658 1 9 SHEET 1 A 2 ILE A 104 GLN A 107 0 SHEET 2 A 2 GLY A 119 LEU A 121 -1 O LYS A 120 N PHE A 106 SHEET 1 B 2 ILE A 155 ARG A 157 0 SHEET 2 B 2 LYS A 266 ASP A 268 -1 O ARG A 267 N VAL A 156 SHEET 1 C 4 VAL A 286 TYR A 289 0 SHEET 2 C 4 GLU A 258 PRO A 262 -1 N ILE A 261 O ILE A 287 SHEET 3 C 4 VAL A 387 THR A 391 1 O ILE A 390 N GLU A 258 SHEET 4 C 4 VAL A 396 ARG A 399 -1 O TYR A 397 N VAL A 389 SHEET 1 D 4 ALA A 441 CYS A 446 0 SHEET 2 D 4 ASP A 449 GLU A 455 -1 O ASP A 449 N CYS A 446 SHEET 3 D 4 PRO A 339 SER A 343 -1 N VAL A 342 O LEU A 452 SHEET 4 D 4 VAL A 487 ALA A 488 -1 O ALA A 488 N ALA A 341 SHEET 1 E 3 SER A 511 GLY A 516 0 SHEET 2 E 3 THR A 500 TRP A 506 -1 N VAL A 504 O SER A 512 SHEET 3 E 3 LEU A 602 THR A 605 -1 O ARG A 604 N ARG A 505 SHEET 1 F 2 TYR A 581 GLY A 585 0 SHEET 2 F 2 GLY A 666 GLN A 670 -1 O PHE A 667 N LYS A 584 LINK C LYS A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N LEU A 116 1555 1555 1.33 LINK C ILE A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N SER A 144 1555 1555 1.32 LINK C VAL A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N TYR A 303 1555 1555 1.32 LINK C HIS A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N THR A 385 1555 1555 1.32 LINK C SER A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N LEU A 417 1555 1555 1.32 LINK C THR A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N TYR A 424 1555 1555 1.33 LINK C GLY A 466 N MSE A 467 1555 1555 1.34 LINK C MSE A 467 N GLN A 468 1555 1555 1.32 LINK C LYS A 484 N MSE A 485 1555 1555 1.34 LINK C MSE A 485 N LYS A 486 1555 1555 1.33 LINK C HIS A 513 N MSE A 514 1555 1555 1.33 LINK C MSE A 514 N ALA A 515 1555 1555 1.33 LINK C LYS A 525 N MSE A 526 1555 1555 1.33 LINK C MSE A 526 N ALA A 527 1555 1555 1.33 LINK C LEU A 551 N MSE A 552 1555 1555 1.34 LINK C MSE A 552 N TYR A 553 1555 1555 1.32 CRYST1 205.727 205.727 99.597 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004861 0.002806 0.000000 0.00000 SCALE2 0.000000 0.005613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010040 0.00000 MASTER 431 0 12 33 17 0 0 6 0 0 0 47 END