HEADER TRANSLATION,PROTEIN TURNOVER 07-JAN-04 1S1Q TITLE TSG101(UEV) DOMAIN IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: TSG101(UEV) DOMAIN; COMPND 5 SYNONYM: TSG101(UEV); TUMOR SUSCEPTIBILITY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: UBIQUITIN AND RIBOSOMAL PROTEIN S27A PRECURSOR; UBIQUITIN COMPND 11 CARBOXYL EXTENSION PROTEIN 80; 40S RIBOSOMAL PROTEIN S27A; COMPND 12 UBIQUITIN-CEP80; HUBCEP80; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HETERODIMER, TRANSLATION, PROTEIN TURNOVER, TRANSLATION,PROTEIN KEYWDS 2 TURNOVER EXPDTA X-RAY DIFFRACTION AUTHOR W.I.SUNDQUIST,H.L.SCHUBERT,B.N.KELLY,G.C.HILL,J.M.HOLTON,C.P.HILL REVDAT 3 13-JUL-11 1S1Q 1 VERSN REVDAT 2 24-FEB-09 1S1Q 1 VERSN REVDAT 1 04-MAY-04 1S1Q 0 JRNL AUTH W.I.SUNDQUIST,H.L.SCHUBERT,B.N.KELLY,G.C.HILL,J.M.HOLTON, JRNL AUTH 2 C.P.HILL JRNL TITL UBIQUITIN RECOGNITION BY THE HUMAN TSG101 PROTEIN JRNL REF MOL.CELL V. 13 783 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15053872 JRNL DOI 10.1016/S1097-2765(04)00129-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 40921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.295 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3538 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3251 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4803 ; 1.357 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7625 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 6.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3773 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3548 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2157 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.037 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3531 ; 1.422 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 2.201 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 3.480 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD & MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KPP & 1UBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.81700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.57700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.81700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.57700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL HETERODIMER IS FORMED FROM MOLECULES AB OR REMARK 300 CD. TWO DIMERS IN THE ASU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 VAL C 3 REMARK 465 SER C 143 REMARK 465 ARG C 144 REMARK 465 PRO C 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 9102 O HOH B 9048 1.87 REMARK 500 O HOH C 9033 O HOH C 9036 2.05 REMARK 500 OG SER C 4 O HOH C 9127 2.11 REMARK 500 O HOH D 9005 O HOH D 9026 2.11 REMARK 500 O HOH A 9025 O HOH A 9063 2.16 REMARK 500 OE1 GLU C 5 O HOH C 9137 2.18 REMARK 500 OE1 GLU D 24 O HOH D 9037 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 9085 O HOH D 9023 4657 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 53 SE MSE A 53 CE -0.520 REMARK 500 MSE C 11 SE MSE C 11 CE -0.365 REMARK 500 MSE C 53 SE MSE C 53 CE -0.590 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 46 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP D 39 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP D 58 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 127.98 72.06 REMARK 500 LYS A 118 117.11 -160.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B9032 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH C9054 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH C9063 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH C9104 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH C9130 DISTANCE = 5.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A9002 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A9023 O REMARK 620 2 GLU A 138 OE2 84.5 REMARK 620 3 HIS A 102 NE2 163.1 104.5 REMARK 620 4 GLU B 34 OE1 88.7 171.6 83.4 REMARK 620 5 HOH B9015 O 90.8 94.6 102.5 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B9003 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 32 OD1 REMARK 620 2 HIS A 115 NE2 105.9 REMARK 620 3 HOH A9109 O 98.5 109.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C9001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 NE2 REMARK 620 2 GLU C 138 OE2 98.7 REMARK 620 3 HOH C9086 O 89.1 91.5 REMARK 620 4 HOH C9042 O 167.3 94.0 91.7 REMARK 620 5 GLU D 34 OE1 94.6 166.0 93.3 72.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D9004 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 32 OD1 REMARK 620 2 HOH D9005 O 177.2 REMARK 620 3 HOH D9061 O 72.8 104.5 REMARK 620 4 HOH D9060 O 99.9 82.9 166.4 REMARK 620 5 HIS C 115 NE2 102.2 77.4 99.0 93.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KPP RELATED DB: PDB REMARK 900 APO-TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1KPQ RELATED DB: PDB REMARK 900 APO-TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1M4P RELATED DB: PDB REMARK 900 PTAP-PEPTIDE BOUND TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1M4Q RELATED DB: PDB REMARK 900 PTAP-PEPTIDE BOUND TSG101(UEV) DOMAIN DBREF 1S1Q A 1 145 UNP Q99816 TS101_HUMAN 1 145 DBREF 1S1Q B 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 1S1Q C 1 145 UNP Q99816 TS101_HUMAN 1 145 DBREF 1S1Q D 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 1S1Q MSE A 1 UNP Q99816 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE A 11 UNP Q99816 MET 11 MODIFIED RESIDUE SEQADV 1S1Q MSE A 53 UNP Q99816 MET 53 MODIFIED RESIDUE SEQADV 1S1Q MSE A 95 UNP Q99816 MET 95 MODIFIED RESIDUE SEQADV 1S1Q MSE A 131 UNP Q99816 MET 131 MODIFIED RESIDUE SEQADV 1S1Q MSE C 1 UNP Q99816 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE C 11 UNP Q99816 MET 11 MODIFIED RESIDUE SEQADV 1S1Q MSE C 53 UNP Q99816 MET 53 MODIFIED RESIDUE SEQADV 1S1Q MSE C 95 UNP Q99816 MET 95 MODIFIED RESIDUE SEQADV 1S1Q MSE C 131 UNP Q99816 MET 131 MODIFIED RESIDUE SEQADV 1S1Q MSE B 1 UNP P62988 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE D 1 UNP P62988 MET 1 MODIFIED RESIDUE SEQRES 1 A 145 MSE ALA VAL SER GLU SER GLN LEU LYS LYS MSE VAL SER SEQRES 2 A 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 A 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 A 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 A 145 MSE ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 A 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 A 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 A 145 THR SER SER MSE THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 A 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 A 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 A 145 MSE ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 A 145 ARG PRO SEQRES 1 B 76 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 145 MSE ALA VAL SER GLU SER GLN LEU LYS LYS MSE VAL SER SEQRES 2 C 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 C 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 C 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 C 145 MSE ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 C 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 C 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 C 145 THR SER SER MSE THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 C 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 C 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 C 145 MSE ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 C 145 ARG PRO SEQRES 1 D 76 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MODRES 1S1Q MSE A 11 MET SELENOMETHIONINE MODRES 1S1Q MSE A 53 MET SELENOMETHIONINE MODRES 1S1Q MSE A 95 MET SELENOMETHIONINE MODRES 1S1Q MSE A 131 MET SELENOMETHIONINE MODRES 1S1Q MSE B 1 MET SELENOMETHIONINE MODRES 1S1Q MSE C 11 MET SELENOMETHIONINE MODRES 1S1Q MSE C 53 MET SELENOMETHIONINE MODRES 1S1Q MSE C 95 MET SELENOMETHIONINE MODRES 1S1Q MSE C 131 MET SELENOMETHIONINE MODRES 1S1Q MSE D 1 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 53 8 HET MSE A 95 8 HET MSE A 131 8 HET MSE B 1 8 HET MSE C 11 8 HET MSE C 53 8 HET MSE C 95 8 HET MSE C 131 8 HET MSE D 1 8 HET CU C9001 1 HET CU A9002 1 HET CU B9003 1 HET CU D9004 1 HET SO4 C 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 C 505 5 HET ACY C 510 4 HET ACY D 511 4 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 5 CU 4(CU 2+) FORMUL 9 SO4 4(O4 S 2-) FORMUL 13 ACY 2(C2 H4 O2) FORMUL 15 HOH *350(H2 O) HELIX 1 1 SER A 4 VAL A 12 1 9 HELIX 2 2 TYR A 17 TYR A 32 1 16 HELIX 3 3 LEU A 111 GLU A 116 1 6 HELIX 4 4 ASP A 123 GLU A 138 1 16 HELIX 5 5 THR B 22 GLY B 35 1 14 HELIX 6 6 PRO B 37 ASP B 39 5 3 HELIX 7 7 LEU B 56 ASN B 60 5 5 HELIX 8 8 SER C 4 VAL C 12 1 9 HELIX 9 9 TYR C 17 TYR C 32 1 16 HELIX 10 10 LEU C 111 GLU C 116 1 6 HELIX 11 11 ASP C 123 GLU C 138 1 16 HELIX 12 12 THR D 22 GLY D 35 1 14 HELIX 13 13 PRO D 37 ASP D 39 5 3 HELIX 14 14 LEU D 56 ASN D 60 5 5 SHEET 1 A 4 LEU A 35 VAL A 43 0 SHEET 2 A 4 SER A 49 TYR A 63 -1 O ARG A 50 N TYR A 42 SHEET 3 A 4 ASN A 66 LEU A 76 -1 O TYR A 68 N VAL A 61 SHEET 4 A 4 ILE A 86 VAL A 89 -1 O ILE A 86 N TRP A 75 SHEET 1 B 2 THR A 96 ILE A 97 0 SHEET 2 B 2 VAL A 141 PHE A 142 -1 O PHE A 142 N THR A 96 SHEET 1 C 5 ILE B 13 GLU B 16 0 SHEET 2 C 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 C 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 C 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 C 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 D 4 LEU C 35 VAL C 43 0 SHEET 2 D 4 SER C 49 TYR C 63 -1 O LEU C 52 N ASP C 40 SHEET 3 D 4 ASN C 66 LEU C 76 -1 O ILE C 72 N GLY C 57 SHEET 4 D 4 ILE C 86 VAL C 89 -1 O ILE C 86 N TRP C 75 SHEET 1 E 2 THR C 96 ILE C 97 0 SHEET 2 E 2 VAL C 141 PHE C 142 -1 O PHE C 142 N THR C 96 SHEET 1 F 5 ILE D 13 GLU D 16 0 SHEET 2 F 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 F 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 F 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 F 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK C LYS A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N VAL A 12 1555 1555 1.33 LINK C LEU A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N ASN A 54 1555 1555 1.32 LINK C SER A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N THR A 96 1555 1555 1.33 LINK C VAL A 130 N MSE A 131 1555 1555 1.32 LINK C MSE A 131 N ILE A 132 1555 1555 1.33 LINK CU CU A9002 O HOH A9023 1555 1555 2.15 LINK CU CU A9002 OE2 GLU A 138 1555 1555 1.93 LINK CU CU A9002 NE2 HIS A 102 1555 1555 2.05 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK CU CU B9003 OD1 ASP B 32 1555 1555 1.98 LINK C LYS C 10 N MSE C 11 1555 1555 1.33 LINK C MSE C 11 N VAL C 12 1555 1555 1.33 LINK C LEU C 52 N MSE C 53 1555 1555 1.32 LINK C MSE C 53 N ASN C 54 1555 1555 1.33 LINK C SER C 94 N MSE C 95 1555 1555 1.34 LINK C MSE C 95 N THR C 96 1555 1555 1.33 LINK C VAL C 130 N MSE C 131 1555 1555 1.32 LINK C MSE C 131 N ILE C 132 1555 1555 1.34 LINK CU CU C9001 NE2 HIS C 102 1555 1555 2.12 LINK CU CU C9001 OE2 GLU C 138 1555 1555 2.04 LINK CU CU C9001 O HOH C9086 1555 1555 2.28 LINK CU CU C9001 O HOH C9042 1555 1555 2.27 LINK C MSE D 1 N GLN D 2 1555 1555 1.32 LINK CU CU D9004 OD1 ASP D 32 1555 1555 2.02 LINK CU CU D9004 O HOH D9005 1555 1555 1.98 LINK CU CU D9004 O HOH D9061 1555 1555 2.11 LINK CU CU D9004 O HOH D9060 1555 1555 2.09 LINK CU CU A9002 OE1 GLU B 34 1555 4646 2.19 LINK CU CU A9002 O HOH B9015 1555 4646 2.38 LINK CU CU B9003 NE2 HIS A 115 1555 4656 2.02 LINK CU CU B9003 O HOH A9109 1555 4656 2.24 LINK CU CU C9001 OE1 GLU D 34 1555 4657 2.31 LINK CU CU D9004 NE2 HIS C 115 1555 4647 2.13 CISPEP 1 TYR A 80 PRO A 81 0 9.70 CISPEP 2 HIS A 119 PRO A 120 0 3.72 CISPEP 3 TYR C 80 PRO C 81 0 3.80 CISPEP 4 HIS C 119 PRO C 120 0 -1.17 SITE 1 AC1 6 LYS C 101 HIS C 102 GLU C 138 HOH C9042 SITE 2 AC1 6 HOH C9086 GLU D 34 SITE 1 AC2 5 HIS A 102 GLU A 138 HOH A9023 GLU B 34 SITE 2 AC2 5 HOH B9015 SITE 1 AC3 3 HIS A 115 HOH A9109 ASP B 32 SITE 1 AC4 5 HIS C 115 ASP D 32 HOH D9005 HOH D9060 SITE 2 AC4 5 HOH D9061 SITE 1 AC5 4 LYS C 16 ARG C 18 ASP C 19 HOH C9087 SITE 1 AC6 4 LYS A 16 ARG A 18 ASP A 19 HOH A9065 SITE 1 AC7 5 GLY A 100 LYS A 101 THR B 7 THR B 9 SITE 2 AC7 5 GLY B 10 SITE 1 AC8 4 THR C 92 SER C 93 HOH C9082 ASN D 60 SITE 1 AC9 4 ILE C 70 PRO C 139 PRO C 140 VAL C 141 SITE 1 BC1 5 LYS D 27 PRO D 38 ASP D 39 ASP D 52 SITE 2 BC1 5 HOH D9037 CRYST1 143.634 59.154 93.998 90.00 128.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006962 0.000000 0.005572 0.00000 SCALE2 0.000000 0.016905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013626 0.00000 MASTER 467 0 20 14 22 0 15 6 0 0 0 36 END