HEADER TRANSFERASE 24-DEC-03 1RZM TITLE CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE TITLE 2 SYNTHASE (DAHPS) FROM THERMOTOGA MARITIMA COMPLEXED WITH CD2+, PEP TITLE 3 AND E4P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHO-2- KETO-3-DEOXYHEPTONATE ALDOLASE, DAHP SYNTHETASE, COMPND 5 3-DEOXY-D-ARABINO- HEPTULOSONATE 7-PHOSPHATE SYNTHASE; COMPND 6 EC: 2.5.1.54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: AROF, TM0343; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-AROG KEYWDS (BETA/ALPHA) BARREL, TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,R.BAUERLE,J.WU,R.W.WOODARD,R.H.KRETSINGER REVDAT 3 13-JUL-11 1RZM 1 VERSN REVDAT 2 24-FEB-09 1RZM 1 VERSN REVDAT 1 10-AUG-04 1RZM 0 JRNL AUTH I.A.SHUMILIN,R.BAUERLE,J.WU,R.W.WOODARD,R.H.KRETSINGER JRNL TITL CRYSTAL STRUCTURE OF THE REACTION COMPLEX OF JRNL TITL 2 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM JRNL TITL 3 THERMOTOGA MARITIMA REFINES THE CATALYTIC MECHANISM AND JRNL TITL 4 INDICATES A NEW MECHANISM OF ALLOSTERIC REGULATION. JRNL REF J.MOL.BIOL. V. 341 455 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15276836 JRNL DOI 10.1016/J.JMB.2004.05.077 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2831 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FWW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LICL, BIS-TRIS PROPANE, REMARK 280 CDCL2, PEP, E4P, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.52850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.52850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.10750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.10750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.52850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.10750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.52850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.10750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.58100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.52850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A8019 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9014 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 7 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO B 7 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 -20.93 -28.90 REMARK 500 THR A 10 -157.93 -97.70 REMARK 500 GLU A 35 -71.16 -137.07 REMARK 500 LEU A 66 20.17 -63.36 REMARK 500 LYS A 70 -62.92 -123.69 REMARK 500 ASN A 92 -128.11 39.43 REMARK 500 PRO B 7 7.47 -38.51 REMARK 500 ASN B 92 -135.04 47.56 REMARK 500 ASP B 251 79.60 -100.84 REMARK 500 PRO B 303 -37.99 -36.94 REMARK 500 ASP B 309 62.90 38.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A8001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 ASP A 309 OD2 82.7 REMARK 620 3 GLU A 298 OE1 96.6 94.4 REMARK 620 4 GLU A 298 OE2 88.2 137.9 45.8 REMARK 620 5 HIS A 272 NE2 170.1 106.6 86.2 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B9001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 272 NE2 REMARK 620 2 GLU B 298 OE1 87.5 REMARK 620 3 GLU B 298 OE2 80.3 46.1 REMARK 620 4 ASP B 309 OD2 101.7 93.8 139.9 REMARK 620 5 E4P B9003 O1 112.9 158.3 127.2 89.4 REMARK 620 6 CYS B 102 SG 166.2 96.8 93.2 91.1 61.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B9009 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 119 OE2 REMARK 620 2 HIS B 115 NE2 100.4 REMARK 620 3 GLU B 119 OE1 48.5 83.2 REMARK 620 4 GLU A 119 OE1 115.6 105.6 77.5 REMARK 620 5 GLU A 119 OE2 164.7 81.5 117.4 49.9 REMARK 620 6 HIS A 115 NE2 83.6 168.8 106.9 81.7 97.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 8001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 9009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 8002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E4P A 8003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E4P B 9003 DBREF 1RZM A 1 338 UNP Q9WYH8 AROF_THEMA 1 338 DBREF 1RZM B 1 338 UNP Q9WYH8 AROF_THEMA 1 338 SEQRES 1 A 338 MET ILE VAL VAL LEU LYS PRO GLY SER THR GLU GLU ASP SEQRES 2 A 338 ILE ARG LYS VAL VAL LYS LEU ALA GLU SER TYR ASN LEU SEQRES 3 A 338 LYS CYS HIS ILE SER LYS GLY GLN GLU ARG THR VAL ILE SEQRES 4 A 338 GLY ILE ILE GLY ASP ASP ARG TYR VAL VAL ALA ASP LYS SEQRES 5 A 338 PHE GLU SER LEU ASP CYS VAL GLU SER VAL VAL ARG VAL SEQRES 6 A 338 LEU LYS PRO TYR LYS LEU VAL SER ARG GLU PHE HIS PRO SEQRES 7 A 338 GLU ASP THR VAL ILE ASP LEU GLY ASP VAL LYS ILE GLY SEQRES 8 A 338 ASN GLY TYR PHE THR ILE ILE ALA GLY PRO CYS SER VAL SEQRES 9 A 338 GLU GLY ARG GLU MET LEU MET GLU THR ALA HIS PHE LEU SEQRES 10 A 338 SER GLU LEU GLY VAL LYS VAL LEU ARG GLY GLY ALA TYR SEQRES 11 A 338 LYS PRO ARG THR SER PRO TYR SER PHE GLN GLY LEU GLY SEQRES 12 A 338 GLU LYS GLY LEU GLU TYR LEU ARG GLU ALA ALA ASP LYS SEQRES 13 A 338 TYR GLY MET TYR VAL VAL THR GLU ALA LEU GLY GLU ASP SEQRES 14 A 338 ASP LEU PRO LYS VAL ALA GLU TYR ALA ASP ILE ILE GLN SEQRES 15 A 338 ILE GLY ALA ARG ASN ALA GLN ASN PHE ARG LEU LEU SER SEQRES 16 A 338 LYS ALA GLY SER TYR ASN LYS PRO VAL LEU LEU LYS ARG SEQRES 17 A 338 GLY PHE MET ASN THR ILE GLU GLU PHE LEU LEU SER ALA SEQRES 18 A 338 GLU TYR ILE ALA ASN SER GLY ASN THR LYS ILE ILE LEU SEQRES 19 A 338 CYS GLU ARG GLY ILE ARG THR PHE GLU LYS ALA THR ARG SEQRES 20 A 338 ASN THR LEU ASP ILE SER ALA VAL PRO ILE ILE ARG LYS SEQRES 21 A 338 GLU SER HIS LEU PRO ILE LEU VAL ASP PRO SER HIS SER SEQRES 22 A 338 GLY GLY ARG ARG ASP LEU VAL ILE PRO LEU SER ARG ALA SEQRES 23 A 338 ALA ILE ALA VAL GLY ALA HIS GLY ILE ILE VAL GLU VAL SEQRES 24 A 338 HIS PRO GLU PRO GLU LYS ALA LEU SER ASP GLY LYS GLN SEQRES 25 A 338 SER LEU ASP PHE GLU LEU PHE LYS GLU LEU VAL GLN GLU SEQRES 26 A 338 MET LYS LYS LEU ALA ASP ALA LEU GLY VAL LYS VAL ASN SEQRES 1 B 338 MET ILE VAL VAL LEU LYS PRO GLY SER THR GLU GLU ASP SEQRES 2 B 338 ILE ARG LYS VAL VAL LYS LEU ALA GLU SER TYR ASN LEU SEQRES 3 B 338 LYS CYS HIS ILE SER LYS GLY GLN GLU ARG THR VAL ILE SEQRES 4 B 338 GLY ILE ILE GLY ASP ASP ARG TYR VAL VAL ALA ASP LYS SEQRES 5 B 338 PHE GLU SER LEU ASP CYS VAL GLU SER VAL VAL ARG VAL SEQRES 6 B 338 LEU LYS PRO TYR LYS LEU VAL SER ARG GLU PHE HIS PRO SEQRES 7 B 338 GLU ASP THR VAL ILE ASP LEU GLY ASP VAL LYS ILE GLY SEQRES 8 B 338 ASN GLY TYR PHE THR ILE ILE ALA GLY PRO CYS SER VAL SEQRES 9 B 338 GLU GLY ARG GLU MET LEU MET GLU THR ALA HIS PHE LEU SEQRES 10 B 338 SER GLU LEU GLY VAL LYS VAL LEU ARG GLY GLY ALA TYR SEQRES 11 B 338 LYS PRO ARG THR SER PRO TYR SER PHE GLN GLY LEU GLY SEQRES 12 B 338 GLU LYS GLY LEU GLU TYR LEU ARG GLU ALA ALA ASP LYS SEQRES 13 B 338 TYR GLY MET TYR VAL VAL THR GLU ALA LEU GLY GLU ASP SEQRES 14 B 338 ASP LEU PRO LYS VAL ALA GLU TYR ALA ASP ILE ILE GLN SEQRES 15 B 338 ILE GLY ALA ARG ASN ALA GLN ASN PHE ARG LEU LEU SER SEQRES 16 B 338 LYS ALA GLY SER TYR ASN LYS PRO VAL LEU LEU LYS ARG SEQRES 17 B 338 GLY PHE MET ASN THR ILE GLU GLU PHE LEU LEU SER ALA SEQRES 18 B 338 GLU TYR ILE ALA ASN SER GLY ASN THR LYS ILE ILE LEU SEQRES 19 B 338 CYS GLU ARG GLY ILE ARG THR PHE GLU LYS ALA THR ARG SEQRES 20 B 338 ASN THR LEU ASP ILE SER ALA VAL PRO ILE ILE ARG LYS SEQRES 21 B 338 GLU SER HIS LEU PRO ILE LEU VAL ASP PRO SER HIS SER SEQRES 22 B 338 GLY GLY ARG ARG ASP LEU VAL ILE PRO LEU SER ARG ALA SEQRES 23 B 338 ALA ILE ALA VAL GLY ALA HIS GLY ILE ILE VAL GLU VAL SEQRES 24 B 338 HIS PRO GLU PRO GLU LYS ALA LEU SER ASP GLY LYS GLN SEQRES 25 B 338 SER LEU ASP PHE GLU LEU PHE LYS GLU LEU VAL GLN GLU SEQRES 26 B 338 MET LYS LYS LEU ALA ASP ALA LEU GLY VAL LYS VAL ASN HET CD A8001 1 HET CD B9001 1 HET CD B9009 1 HET PEP A8002 10 HET PEP B9002 10 HET E4P A8003 12 HET E4P B9003 12 HETNAM CD CADMIUM ION HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM E4P ERYTHOSE-4-PHOSPHATE FORMUL 3 CD 3(CD 2+) FORMUL 6 PEP 2(C3 H5 O6 P) FORMUL 8 E4P 2(C4 H9 O7 P) FORMUL 10 HOH *159(H2 O) HELIX 1 1 GLU A 11 TYR A 24 1 14 HELIX 2 2 GLY A 43 VAL A 48 5 6 HELIX 3 3 VAL A 49 SER A 55 1 7 HELIX 4 4 GLY A 106 GLU A 119 1 14 HELIX 5 5 GLY A 143 GLY A 158 1 16 HELIX 6 6 ASP A 170 ALA A 178 1 9 HELIX 7 7 GLY A 184 ALA A 188 5 5 HELIX 8 8 ASN A 190 TYR A 200 1 11 HELIX 9 9 THR A 213 ASN A 226 1 14 HELIX 10 10 SER A 253 SER A 262 1 10 HELIX 11 11 ARG A 276 ASP A 278 5 3 HELIX 12 12 LEU A 279 VAL A 290 1 12 HELIX 13 13 GLU A 302 ALA A 306 5 5 HELIX 14 14 ASP A 315 GLY A 334 1 20 HELIX 15 15 THR B 10 GLU B 22 1 13 HELIX 16 16 SER B 23 ASN B 25 5 3 HELIX 17 17 VAL B 49 SER B 55 1 7 HELIX 18 18 ARG B 107 GLU B 119 1 13 HELIX 19 19 GLY B 143 TYR B 157 1 15 HELIX 20 20 ASP B 170 ALA B 178 1 9 HELIX 21 21 GLY B 184 ALA B 188 5 5 HELIX 22 22 ASN B 190 GLY B 198 1 9 HELIX 23 23 THR B 213 SER B 227 1 15 HELIX 24 24 SER B 253 SER B 262 1 10 HELIX 25 25 ASP B 269 GLY B 275 1 7 HELIX 26 26 ARG B 276 ASP B 278 5 3 HELIX 27 27 LEU B 279 GLY B 291 1 13 HELIX 28 28 GLU B 302 ALA B 306 5 5 HELIX 29 29 ASP B 315 GLY B 334 1 20 SHEET 1 A 4 LYS A 27 LYS A 32 0 SHEET 2 A 4 THR A 37 ILE A 42 -1 O ILE A 42 N LYS A 27 SHEET 3 A 4 ILE A 2 LEU A 5 -1 N VAL A 3 O ILE A 39 SHEET 4 A 4 VAL A 59 VAL A 63 -1 O VAL A 63 N ILE A 2 SHEET 1 B 2 ILE A 83 ASP A 84 0 SHEET 2 B 2 LYS A 89 ILE A 90 -1 O ILE A 90 N ILE A 83 SHEET 1 C10 LYS A 336 ASN A 338 0 SHEET 2 C10 TYR A 94 GLY A 100 1 N PHE A 95 O LYS A 336 SHEET 3 C10 GLY A 294 GLU A 298 1 O ILE A 295 N ILE A 98 SHEET 4 C10 ILE A 266 VAL A 268 1 N VAL A 268 O GLY A 294 SHEET 5 C10 ILE A 232 GLU A 236 1 N LEU A 234 O LEU A 267 SHEET 6 C10 VAL A 204 LYS A 207 1 N VAL A 204 O ILE A 233 SHEET 7 C10 ILE A 180 ILE A 183 1 N ILE A 181 O LEU A 205 SHEET 8 C10 TYR A 160 GLU A 164 1 N THR A 163 O GLN A 182 SHEET 9 C10 VAL A 124 ARG A 126 1 N LEU A 125 O TYR A 160 SHEET 10 C10 TYR A 94 GLY A 100 1 N ALA A 99 O ARG A 126 SHEET 1 D 4 LYS B 27 LYS B 32 0 SHEET 2 D 4 THR B 37 ILE B 42 -1 O GLY B 40 N HIS B 29 SHEET 3 D 4 ILE B 2 LEU B 5 -1 N LEU B 5 O THR B 37 SHEET 4 D 4 VAL B 59 VAL B 63 -1 O VAL B 63 N ILE B 2 SHEET 1 E 2 ILE B 83 ASP B 84 0 SHEET 2 E 2 LYS B 89 ILE B 90 -1 O ILE B 90 N ILE B 83 SHEET 1 F10 LYS B 336 ASN B 338 0 SHEET 2 F10 TYR B 94 GLY B 100 1 N ILE B 97 O ASN B 338 SHEET 3 F10 GLY B 294 GLU B 298 1 O VAL B 297 N ILE B 98 SHEET 4 F10 ILE B 266 VAL B 268 1 N VAL B 268 O GLY B 294 SHEET 5 F10 ILE B 232 GLU B 236 1 N GLU B 236 O LEU B 267 SHEET 6 F10 VAL B 204 LYS B 207 1 N VAL B 204 O ILE B 233 SHEET 7 F10 ILE B 180 ILE B 183 1 N ILE B 181 O LEU B 205 SHEET 8 F10 TYR B 160 GLU B 164 1 N THR B 163 O GLN B 182 SHEET 9 F10 VAL B 124 ARG B 126 1 N LEU B 125 O TYR B 160 SHEET 10 F10 TYR B 94 GLY B 100 1 N ALA B 99 O VAL B 124 LINK CD CD A8001 SG CYS A 102 1555 1555 2.69 LINK CD CD A8001 OD2 ASP A 309 1555 1555 2.36 LINK CD CD A8001 OE1 GLU A 298 1555 1555 3.04 LINK CD CD A8001 OE2 GLU A 298 1555 1555 2.47 LINK CD CD A8001 NE2 HIS A 272 1555 1555 2.35 LINK CD CD B9001 NE2 HIS B 272 1555 1555 2.35 LINK CD CD B9001 OE1 GLU B 298 1555 1555 3.00 LINK CD CD B9001 OE2 GLU B 298 1555 1555 2.45 LINK CD CD B9001 OD2 ASP B 309 1555 1555 2.46 LINK CD CD B9001 O1 E4P B9003 1555 1555 2.91 LINK CD CD B9001 SG CYS B 102 1555 1555 2.74 LINK CD CD B9009 OE2 GLU B 119 1555 1555 2.39 LINK CD CD B9009 NE2 HIS B 115 1555 1555 2.25 LINK CD CD B9009 OE1 GLU B 119 1555 1555 2.87 LINK CD CD B9009 OE1 GLU A 119 1555 5545 2.77 LINK CD CD B9009 OE2 GLU A 119 1555 5545 2.37 LINK CD CD B9009 NE2 HIS A 115 1555 5545 2.24 SITE 1 AC1 4 CYS A 102 HIS A 272 GLU A 298 ASP A 309 SITE 1 AC2 5 CYS B 102 HIS B 272 GLU B 298 ASP B 309 SITE 2 AC2 5 E4P B9003 SITE 1 AC3 4 HIS A 115 GLU A 119 HIS B 115 GLU B 119 SITE 1 AC4 13 ARG A 126 LYS A 131 GLN A 182 GLY A 184 SITE 2 AC4 13 ALA A 185 ARG A 186 LYS A 207 ARG A 237 SITE 3 AC4 13 HIS A 272 E4P A8003 HOH A8015 HOH A8018 SITE 4 AC4 13 HOH A8061 SITE 1 AC5 13 ARG B 126 LYS B 131 GLN B 182 GLY B 184 SITE 2 AC5 13 ALA B 185 ARG B 186 LYS B 207 ARG B 237 SITE 3 AC5 13 HIS B 272 E4P B9003 HOH B9023 HOH B9036 SITE 4 AC5 13 HOH B9038 SITE 1 AC6 10 LYS A 131 PRO A 132 ARG A 133 THR A 134 SITE 2 AC6 10 ARG A 186 SER A 308 ASP A 309 PEP A8002 SITE 3 AC6 10 HOH A8025 HOH A8055 SITE 1 AC7 11 CYS B 102 LYS B 131 PRO B 132 ARG B 133 SITE 2 AC7 11 THR B 134 ARG B 186 SER B 308 ASP B 309 SITE 3 AC7 11 CD B9001 PEP B9002 HOH B9049 CRYST1 71.581 144.215 141.057 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007089 0.00000 MASTER 356 0 7 29 32 0 18 6 0 0 0 52 END