HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-03 1RZ2 TITLE 1.6A CRYSTAL STRUCTURE OF THE PROTEIN BA4783/Q81L49 (SIMILAR TO TITLE 2 SORTASE B) FROM BACILLUS ANTHRACIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN BA4783; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: STR. AMES; SOURCE 5 GENE: BA4783; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS SORTASE B PROTEIN, B. ANTHRACIS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.ZHANG,P.GORNICKI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 13-JUL-11 1RZ2 1 VERSN REVDAT 4 24-FEB-09 1RZ2 1 VERSN REVDAT 3 05-APR-05 1RZ2 1 JRNL REVDAT 2 18-JAN-05 1RZ2 1 AUTHOR KEYWDS REMARK REVDAT 1 06-JUL-04 1RZ2 0 JRNL AUTH R.ZHANG,R.WU,G.JOACHIMIAK,S.K.MAZMANIAN,D.M.MISSIAKAS, JRNL AUTH 2 P.GORNICKI,O.SCHNEEWIND,A.JOACHIMIAK JRNL TITL STRUCTURES OF SORTASE B FROM STAPHYLOCOCCUS AUREUS AND JRNL TITL 2 BACILLUS ANTHRACIS REVEAL CATALYTIC AMINO ACID TRIAD IN THE JRNL TITL 3 ACTIVE SITE. JRNL REF STRUCTURE V. 12 1147 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242591 JRNL DOI 10.1016/J.STR.2004.06.001 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 866183.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 53007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2643 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7725 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 416 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -3.12000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.72 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 54.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FRIEDEL PAIRS WERE USED IN REFINEMENT. REMARK 4 REMARK 4 1RZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9798, 0.94656 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.820 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FRIEDEL PAIRS WERE USED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 20% PEG 3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.29950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 PHE A 13 REMARK 465 GLN A 14 REMARK 465 ARG A 15 REMARK 465 ILE A 16 REMARK 465 LEU A 17 REMARK 465 THR A 18 REMARK 465 VAL A 19 REMARK 465 VAL A 20 REMARK 465 PHE A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 PHE A 25 REMARK 465 PHE A 26 REMARK 465 TYR A 27 REMARK 465 SER A 28 REMARK 465 VAL A 29 REMARK 465 TYR A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 ASP A 34 REMARK 465 TYR A 235 REMARK 465 ALA A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 PRO A 239 REMARK 465 GLU A 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 89 O HOH A 388 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 138.80 -35.40 REMARK 500 ASN A 93 71.88 -162.56 REMARK 500 MET A 115 117.77 -160.75 REMARK 500 MET A 147 -116.83 59.41 REMARK 500 HIS A 163 52.09 -141.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NG5 RELATED DB: PDB REMARK 900 RELATED ID: APC2100 RELATED DB: TARGETDB DBREF 1RZ2 A 1 254 UNP Q81L49 Q81L49_BACAN 1 254 SEQRES 1 A 254 MET SER SER GLU LYS GLU ARG LYS LYS LYS ILE PHE PHE SEQRES 2 A 254 GLN ARG ILE LEU THR VAL VAL PHE LEU GLY THR PHE PHE SEQRES 3 A 254 TYR SER VAL TYR GLU LEU GLY ASP ILE PHE MET ASP TYR SEQRES 4 A 254 TYR GLU ASN ARG LYS VAL MET ALA GLU ALA GLN ASN ILE SEQRES 5 A 254 TYR GLU LYS SER PRO MET GLU GLU GLN SER GLN ASP GLY SEQRES 6 A 254 GLU VAL ARG LYS GLN PHE LYS ALA LEU GLN GLN ILE ASN SEQRES 7 A 254 GLN GLU ILE VAL GLY TRP ILE THR MET ASP ASP THR GLN SEQRES 8 A 254 ILE ASN TYR PRO ILE VAL GLN ALA LYS ASP ASN ASP TYR SEQRES 9 A 254 TYR LEU PHE ARG ASN TYR LYS GLY GLU ASP MET ARG ALA SEQRES 10 A 254 GLY SER ILE PHE MET ASP TYR ARG ASN ASP VAL LYS SER SEQRES 11 A 254 GLN ASN ARG ASN THR ILE LEU TYR GLY HIS ARG MET LYS SEQRES 12 A 254 ASP GLY SER MET PHE GLY SER LEU LYS LYS MET LEU ASP SEQRES 13 A 254 GLU GLU PHE PHE MET SER HIS ARG LYS LEU TYR TYR ASP SEQRES 14 A 254 THR LEU PHE GLU GLY TYR ASP LEU GLU VAL PHE SER VAL SEQRES 15 A 254 TYR THR THR THR THR ASP PHE TYR TYR ILE GLU THR ASP SEQRES 16 A 254 PHE SER SER ASP THR GLU TYR THR SER PHE LEU GLU LYS SEQRES 17 A 254 ILE GLN GLU LYS SER LEU TYR LYS THR ASP THR THR VAL SEQRES 18 A 254 THR ALA GLY ASP GLN ILE VAL THR LEU SER THR CYS ASP SEQRES 19 A 254 TYR ALA LEU ASP PRO GLU ALA GLY ARG LEU VAL VAL HIS SEQRES 20 A 254 ALA LYS LEU VAL LYS ARG GLN FORMUL 2 HOH *187(H2 O) HELIX 1 1 ASP A 38 SER A 56 1 19 HELIX 2 2 SER A 62 GLU A 66 5 5 HELIX 3 3 ARG A 68 GLN A 70 5 3 HELIX 4 4 PHE A 71 ASN A 78 1 8 HELIX 5 5 PHE A 148 LEU A 155 5 8 HELIX 6 6 ASP A 156 SER A 162 1 7 HELIX 7 7 SER A 198 SER A 213 1 16 SHEET 1 A 9 ILE A 81 THR A 86 0 SHEET 2 A 9 ASN A 93 GLN A 98 -1 O ILE A 96 N GLY A 83 SHEET 3 A 9 ILE A 120 MET A 122 1 O MET A 122 N VAL A 97 SHEET 4 A 9 ASN A 134 GLY A 139 -1 O TYR A 138 N PHE A 121 SHEET 5 A 9 ILE A 227 THR A 232 1 O THR A 229 N LEU A 137 SHEET 6 A 9 LEU A 244 LYS A 252 -1 O VAL A 246 N LEU A 230 SHEET 7 A 9 GLY A 174 THR A 184 -1 N ASP A 176 O VAL A 251 SHEET 8 A 9 LYS A 165 THR A 170 -1 N TYR A 168 O TYR A 175 SHEET 9 A 9 ILE A 81 THR A 86 -1 N THR A 86 O TYR A 167 CRYST1 40.474 64.599 42.964 90.00 105.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024707 0.000000 0.006977 0.00000 SCALE2 0.000000 0.015480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024186 0.00000 MASTER 290 0 0 7 9 0 0 6 0 0 0 20 END