HEADER CELL ADHESION 19-DEC-03 1RY4 TITLE NMR STRUCTURE OF THE CRIB-PDZ MODULE OF PAR-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG5884-PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRIB-PDZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: PAR-6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBH KEYWDS PDZ, CRIB, CDC-42, CELL POLARIZATION, POLARITY ADAPTOR KEYWDS 2 COMPLEX, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.C.PETERSON,R.R.PENKERT,B.F.VOLKMAN,K.E.PREHODA REVDAT 2 24-FEB-09 1RY4 1 VERSN REVDAT 1 23-MAR-04 1RY4 0 JRNL AUTH F.C.PETERSON,R.R.PENKERT,B.F.VOLKMAN,K.E.PREHODA JRNL TITL CDC42 REGULATES THE PAR-6 PDZ DOMAIN THROUGH AN JRNL TITL 2 ALLOSTERIC CRIB-PDZ TRANSITION. JRNL REF MOL.CELL V. 13 665 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15023337 JRNL DOI 10.1016/S1097-2765(04)00086-3 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : AXEL BRUNGER AND MARIUS CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1703 RESTRAINTS, 1564 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 139 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1RY4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021137. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50MM SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PAR-6 U-15C,13C, 20MM REMARK 210 PHOSPHATE BUFFER, 0.05% SODIUM REMARK 210 AZIDE; 0.5MM PAR-6 U-15, 20MM REMARK 210 PHOSPHATE BUFFER, 0.05% SODIUM REMARK 210 AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 3D_13C-SEPARATED_AROMATIC_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, NMRPIPE REMARK 210 97.027.12.56, XEASY 1.3.13, REMARK 210 GARANT 2.1, CYANA 1.0.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 129 149.68 69.00 REMARK 500 1 LYS A 130 73.41 -116.95 REMARK 500 1 PHE A 142 92.24 -179.17 REMARK 500 1 ILE A 148 88.20 -67.04 REMARK 500 1 VAL A 151 -68.30 -136.32 REMARK 500 1 ILE A 153 125.66 59.06 REMARK 500 1 HIS A 166 89.32 -152.31 REMARK 500 1 PHE A 196 -168.44 -119.08 REMARK 500 1 ASN A 222 -69.01 70.25 REMARK 500 2 PHE A 142 93.62 166.66 REMARK 500 2 ASP A 150 91.47 62.73 REMARK 500 2 VAL A 151 -72.99 -124.71 REMARK 500 2 ILE A 153 -92.88 40.29 REMARK 500 2 HIS A 166 -75.63 -139.53 REMARK 500 2 ASP A 169 -70.48 -165.14 REMARK 500 2 LEU A 211 -46.47 -145.43 REMARK 500 2 VAL A 214 -72.61 43.22 REMARK 500 2 ASN A 222 -72.09 69.59 REMARK 500 2 ASN A 241 -70.17 -93.58 REMARK 500 2 SER A 242 -41.28 60.16 REMARK 500 2 SER A 243 -73.15 -68.60 REMARK 500 2 ASN A 253 8.81 56.43 REMARK 500 3 SER A 137 93.21 -161.95 REMARK 500 3 GLU A 156 78.64 -67.93 REMARK 500 3 HIS A 166 79.07 -162.26 REMARK 500 3 SER A 198 -59.29 -121.23 REMARK 500 3 ASN A 222 -70.17 68.30 REMARK 500 4 SER A 137 73.93 58.26 REMARK 500 4 ARG A 143 89.95 -150.02 REMARK 500 4 HIS A 166 76.33 -164.99 REMARK 500 4 SER A 168 97.00 67.58 REMARK 500 4 LEU A 172 -65.56 -143.04 REMARK 500 4 ASN A 222 -74.27 65.97 REMARK 500 4 ASN A 241 -79.21 -82.31 REMARK 500 4 SER A 242 -37.31 59.59 REMARK 500 4 ASN A 253 -31.32 68.47 REMARK 500 5 ARG A 143 98.02 69.22 REMARK 500 5 ASN A 222 -66.19 70.60 REMARK 500 6 SER A 129 107.29 64.03 REMARK 500 6 PHE A 142 -64.64 -101.83 REMARK 500 6 ARG A 143 102.33 -175.77 REMARK 500 6 ASP A 150 117.43 72.63 REMARK 500 6 ILE A 153 -81.17 -80.92 REMARK 500 6 ASP A 169 108.06 71.23 REMARK 500 6 ASN A 222 -77.81 64.36 REMARK 500 6 ALA A 227 109.07 -57.59 REMARK 500 6 ASN A 253 83.74 75.16 REMARK 500 7 LYS A 130 -76.86 -153.95 REMARK 500 7 ARG A 143 24.35 40.89 REMARK 500 7 LEU A 172 -91.31 63.62 REMARK 500 7 ASN A 222 -62.85 70.28 REMARK 500 7 ASN A 241 -69.43 -121.13 REMARK 500 7 SER A 242 -39.76 61.04 REMARK 500 7 GLN A 254 31.65 -98.79 REMARK 500 8 PHE A 142 -55.53 -152.80 REMARK 500 8 ASP A 150 94.72 72.07 REMARK 500 8 VAL A 151 -39.47 -132.20 REMARK 500 8 ASP A 169 96.50 49.69 REMARK 500 8 ASN A 222 -68.36 71.23 REMARK 500 8 ASN A 253 102.35 66.35 REMARK 500 9 ILE A 136 147.52 68.15 REMARK 500 9 PHE A 142 96.46 -170.87 REMARK 500 9 ILE A 153 170.92 56.74 REMARK 500 9 SER A 168 72.77 58.63 REMARK 500 9 PRO A 171 -162.93 -77.69 REMARK 500 9 SER A 198 -67.36 -96.04 REMARK 500 9 ASN A 222 -70.14 67.73 REMARK 500 9 ALA A 227 108.90 -55.21 REMARK 500 10 ASP A 150 121.65 69.95 REMARK 500 10 ILE A 153 165.38 63.93 REMARK 500 10 GLU A 156 80.35 -66.54 REMARK 500 10 HIS A 166 117.90 179.80 REMARK 500 10 SER A 168 148.56 -171.88 REMARK 500 10 LYS A 170 121.38 62.89 REMARK 500 10 PRO A 171 22.94 -78.42 REMARK 500 10 LEU A 172 -73.56 66.50 REMARK 500 10 ASN A 222 -66.62 69.82 REMARK 500 10 PRO A 251 126.90 -39.23 REMARK 500 11 ARG A 143 89.71 58.90 REMARK 500 11 ASP A 169 117.19 171.68 REMARK 500 11 LYS A 170 86.59 66.77 REMARK 500 11 VAL A 214 -43.80 57.23 REMARK 500 11 ASN A 222 -73.83 70.33 REMARK 500 12 ARG A 143 89.59 68.26 REMARK 500 12 ASP A 150 141.21 -176.62 REMARK 500 12 SER A 168 133.53 -175.69 REMARK 500 12 ASP A 169 -57.37 178.46 REMARK 500 12 LEU A 172 123.60 75.01 REMARK 500 12 PHE A 174 144.23 -172.20 REMARK 500 12 SER A 198 -39.67 -136.03 REMARK 500 12 ASN A 222 -73.40 72.99 REMARK 500 12 ALA A 227 103.48 -56.80 REMARK 500 12 ASN A 241 -63.07 -95.82 REMARK 500 12 SER A 242 -41.31 66.04 REMARK 500 12 ASN A 244 42.03 -105.18 REMARK 500 12 ASN A 253 99.30 67.72 REMARK 500 13 SER A 137 102.93 -160.48 REMARK 500 13 VAL A 151 -45.44 -137.85 REMARK 500 13 ILE A 153 148.46 55.42 REMARK 500 13 ASN A 222 -70.60 69.52 REMARK 500 13 ALA A 227 102.58 -56.00 REMARK 500 14 SER A 129 86.81 64.41 REMARK 500 14 PHE A 142 86.44 -153.24 REMARK 500 14 VAL A 151 -60.44 -106.48 REMARK 500 14 ILE A 153 117.36 -168.93 REMARK 500 14 ASP A 169 -42.50 72.20 REMARK 500 14 LEU A 211 -35.42 -138.20 REMARK 500 14 ASN A 253 79.94 43.37 REMARK 500 15 PRO A 134 102.82 -55.98 REMARK 500 15 VAL A 151 -66.63 -127.60 REMARK 500 15 GLU A 156 96.84 -63.20 REMARK 500 15 PHE A 174 134.04 -174.70 REMARK 500 15 ASP A 216 161.03 -48.75 REMARK 500 15 ASN A 222 -9.96 70.56 REMARK 500 15 SER A 242 -40.97 64.60 REMARK 500 15 ASN A 244 75.39 -117.27 REMARK 500 15 ASN A 253 101.91 68.44 REMARK 500 16 PRO A 134 -159.91 -81.30 REMARK 500 16 PHE A 142 -145.37 53.65 REMARK 500 16 ARG A 143 69.15 -110.37 REMARK 500 16 GLU A 156 88.07 -58.70 REMARK 500 16 ASN A 222 -71.10 70.22 REMARK 500 16 ASN A 241 32.72 -142.94 REMARK 500 17 SER A 135 94.89 68.36 REMARK 500 17 SER A 137 96.02 71.58 REMARK 500 17 ARG A 143 62.49 64.08 REMARK 500 17 ASP A 150 -152.16 -113.42 REMARK 500 17 VAL A 151 92.28 50.45 REMARK 500 17 LYS A 170 100.13 -166.58 REMARK 500 17 PRO A 171 44.44 -75.50 REMARK 500 17 LEU A 172 90.78 -69.59 REMARK 500 17 ASN A 222 -77.62 68.41 REMARK 500 18 ILE A 136 138.78 72.51 REMARK 500 18 ASP A 150 105.91 71.83 REMARK 500 18 GLU A 156 83.29 -63.93 REMARK 500 18 HIS A 166 105.66 -173.99 REMARK 500 18 LYS A 170 97.45 38.50 REMARK 500 18 PHE A 174 145.69 -170.29 REMARK 500 18 ASN A 222 -78.53 65.82 REMARK 500 18 ALA A 227 101.89 -56.70 REMARK 500 19 ARG A 143 83.38 51.96 REMARK 500 19 ASP A 150 -154.75 -151.01 REMARK 500 19 VAL A 151 94.64 48.70 REMARK 500 19 GLU A 156 90.05 -56.33 REMARK 500 19 HIS A 166 25.74 -153.21 REMARK 500 19 ASN A 222 -69.34 68.20 REMARK 500 19 ALA A 227 108.07 -58.33 REMARK 500 19 ASN A 253 88.38 65.88 REMARK 500 20 SER A 137 108.98 177.85 REMARK 500 20 PHE A 174 142.26 -170.41 REMARK 500 20 ASN A 222 -68.82 69.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 1RY4 A 130 255 GB 18860099 NP_573238 130 255 SEQADV 1RY4 GLY A 128 GB 18860099 CLONING ARTIFACT SEQADV 1RY4 SER A 129 GB 18860099 CLONING ARTIFACT SEQRES 1 A 128 GLY SER LYS THR LYS ALA PRO SER ILE SER ILE PRO HIS SEQRES 2 A 128 ASP PHE ARG GLN VAL SER ALA ILE ILE ASP VAL ASP ILE SEQRES 3 A 128 VAL PRO GLU THR HIS ARG ARG VAL ARG LEU LEU LYS HIS SEQRES 4 A 128 GLY SER ASP LYS PRO LEU GLY PHE TYR ILE ARG ASP GLY SEQRES 5 A 128 THR SER VAL ARG VAL THR ALA SER GLY LEU GLU LYS GLN SEQRES 6 A 128 PRO GLY ILE PHE ILE SER ARG LEU VAL PRO GLY GLY LEU SEQRES 7 A 128 ALA GLU SER THR GLY LEU LEU ALA VAL ASN ASP GLU VAL SEQRES 8 A 128 ILE GLU VAL ASN GLY ILE GLU VAL ALA GLY LYS THR LEU SEQRES 9 A 128 ASP GLN VAL THR ASP MET MET VAL ALA ASN SER SER ASN SEQRES 10 A 128 LEU ILE ILE THR VAL LYS PRO ALA ASN GLN ARG HELIX 1 1 GLY A 204 GLY A 210 1 7 HELIX 2 2 THR A 230 ASN A 241 1 12 HELIX 3 3 SER A 242 ASN A 244 5 3 SHEET 1 A 4 ARG A 159 LEU A 163 0 SHEET 2 A 4 LEU A 245 LYS A 250 -1 O ILE A 247 N VAL A 161 SHEET 3 A 4 GLU A 217 VAL A 221 -1 N ILE A 219 O THR A 248 SHEET 4 A 4 ILE A 224 GLU A 225 -1 O ILE A 224 N VAL A 221 SHEET 1 B 2 PHE A 174 THR A 185 0 SHEET 2 B 2 GLY A 188 LEU A 200 -1 O GLN A 192 N SER A 181 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 222 0 0 3 6 0 0 6 0 0 0 10 END