HEADER ANTIBIOTIC 19-DEC-03 1RY3 TITLE NMR SOLUTION STRUCTURE OF THE PRECURSOR FOR TITLE 2 CARNOBACTERIOCIN B2, AN ANTIMICROBIAL PEPTIDE FROM TITLE 3 CARNOBACTERIUM PISCICOLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN CARNOBACTERIOCIN B2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARNOCIN CP52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; SOURCE 3 ORGANISM_TAXID: 2751; SOURCE 4 STRAIN: LV17B; SOURCE 5 GENE: CBNB2, CANCP52; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-C KEYWDS AMPHIPATHIC HELIX, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SPRULES,K.E.KAWULKA,A.C.GIBBS,D.S.WISHART,J.C.VEDERAS REVDAT 2 24-FEB-09 1RY3 1 VERSN REVDAT 1 04-MAY-04 1RY3 0 JRNL AUTH T.SPRULES,K.E.KAWULKA,A.C.GIBBS,D.S.WISHART, JRNL AUTH 2 J.C.VEDERAS JRNL TITL NMR SOLUTION STRUCTURE OF THE PRECURSOR FOR JRNL TITL 2 CARNOBACTERIOCIN B2, AN ANTIMICROBIAL PEPTIDE FROM JRNL TITL 3 CARNOBACTERIUM PISCICOLA. JRNL REF EUR.J.BIOCHEM. V. 271 1748 2004 JRNL REFN ISSN 0014-2956 JRNL PMID 15096213 JRNL DOI 10.1111/J.1432-1033.2004.04085.X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 649 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 22 HYDROGEN BONDS AND 91 DIHEDRAL ANGLES WERE REMARK 3 USED IN THE CALCULATION REMARK 4 REMARK 4 1RY3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021136. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PRECARNOBACTERIOCIN B2 U REMARK 210 -15N; 1 MM PRECARNOBACTERIOCIN REMARK 210 B2 U-15N,U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2.2, REMARK 210 NMRVIEW 5.0, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 3 68.01 63.22 REMARK 500 1 SER A 10 111.33 -160.93 REMARK 500 1 LYS A 11 -14.67 65.28 REMARK 500 1 CYS A 14 50.29 -104.14 REMARK 500 1 ASN A 17 62.29 -106.72 REMARK 500 1 VAL A 34 -74.92 -54.70 REMARK 500 1 VAL A 37 -71.58 -91.29 REMARK 500 1 ALA A 38 -75.15 -83.42 REMARK 500 1 SER A 39 5.11 -62.73 REMARK 500 2 ASN A 2 37.59 -161.92 REMARK 500 2 TYR A 3 39.68 -177.90 REMARK 500 2 SER A 8 -179.97 51.99 REMARK 500 2 SER A 10 108.67 -168.57 REMARK 500 2 LYS A 11 -8.50 62.96 REMARK 500 2 CYS A 14 50.94 -98.16 REMARK 500 2 VAL A 34 -74.50 -54.66 REMARK 500 2 VAL A 37 -72.56 -91.43 REMARK 500 2 ALA A 38 -75.24 -83.41 REMARK 500 2 SER A 39 6.47 -62.78 REMARK 500 2 SER A 43 58.79 -109.17 REMARK 500 3 LEU A -4 -71.99 -90.43 REMARK 500 3 VAL A 1 -169.41 44.97 REMARK 500 3 VAL A 7 -160.75 -101.57 REMARK 500 3 LYS A 13 178.69 -52.06 REMARK 500 3 CYS A 14 33.50 -94.88 REMARK 500 3 SER A 15 78.09 -161.92 REMARK 500 3 ASN A 17 39.55 179.71 REMARK 500 3 VAL A 34 -73.98 -54.78 REMARK 500 3 VAL A 37 -70.54 -91.47 REMARK 500 3 ALA A 38 -75.10 -83.47 REMARK 500 3 SER A 39 9.34 -63.91 REMARK 500 3 ILE A 44 51.60 -163.84 REMARK 500 4 GLU A -8 -74.30 -55.55 REMARK 500 4 LEU A -4 -71.84 -90.17 REMARK 500 4 ASN A 2 59.08 -152.39 REMARK 500 4 TYR A 3 79.82 60.26 REMARK 500 4 VAL A 7 -161.63 41.09 REMARK 500 4 CYS A 9 173.88 -48.64 REMARK 500 4 SER A 10 111.08 -166.82 REMARK 500 4 CYS A 14 37.24 -99.96 REMARK 500 4 ASN A 17 98.04 -179.37 REMARK 500 4 VAL A 34 -70.62 -54.78 REMARK 500 4 VAL A 37 -70.88 -91.41 REMARK 500 4 ALA A 38 -75.26 -83.31 REMARK 500 4 SER A 39 6.76 -63.20 REMARK 500 4 ALA A 41 -82.91 -163.13 REMARK 500 4 SER A 43 45.61 -94.35 REMARK 500 5 GLU A -8 -70.69 -60.76 REMARK 500 5 VAL A 1 100.34 -58.43 REMARK 500 5 ASN A 2 38.58 -159.74 REMARK 500 5 TYR A 3 38.60 -176.69 REMARK 500 5 ASN A 5 -87.52 -53.72 REMARK 500 5 LYS A 11 -35.44 -160.09 REMARK 500 5 LYS A 13 121.87 -30.25 REMARK 500 5 CYS A 14 39.54 -90.88 REMARK 500 5 VAL A 16 49.18 -93.70 REMARK 500 5 ASN A 17 98.50 70.96 REMARK 500 5 VAL A 34 -74.29 -54.68 REMARK 500 5 VAL A 37 -71.09 -91.35 REMARK 500 5 ALA A 38 -74.82 -83.34 REMARK 500 5 SER A 39 12.75 -65.27 REMARK 500 5 ALA A 41 -83.35 -163.46 REMARK 500 5 SER A 43 -38.66 -158.37 REMARK 500 5 ILE A 44 74.79 52.25 REMARK 500 6 GLU A -8 -80.53 -58.38 REMARK 500 6 VAL A 7 -162.04 41.25 REMARK 500 6 SER A 10 113.79 -178.87 REMARK 500 6 THR A 12 -7.55 -149.80 REMARK 500 6 CYS A 14 96.40 67.84 REMARK 500 6 VAL A 16 41.00 -96.17 REMARK 500 6 VAL A 34 -71.86 -54.70 REMARK 500 6 VAL A 37 -72.18 -91.46 REMARK 500 6 ALA A 38 -75.36 -83.43 REMARK 500 6 SER A 39 7.31 -62.98 REMARK 500 6 ALA A 41 54.82 -168.07 REMARK 500 6 SER A 43 60.05 -103.67 REMARK 500 7 GLU A -8 -72.66 -54.98 REMARK 500 7 TYR A 3 79.06 60.77 REMARK 500 7 SER A 8 173.03 54.82 REMARK 500 7 SER A 10 112.31 -160.51 REMARK 500 7 CYS A 14 30.92 -98.41 REMARK 500 7 SER A 15 38.89 -155.89 REMARK 500 7 ASN A 17 38.54 -97.14 REMARK 500 7 VAL A 34 -74.76 -54.74 REMARK 500 7 VAL A 37 -71.97 -91.47 REMARK 500 7 ALA A 38 -75.43 -83.34 REMARK 500 7 SER A 39 9.20 -63.43 REMARK 500 7 ILE A 44 40.61 -107.65 REMARK 500 8 ASN A -17 45.57 -90.36 REMARK 500 8 GLU A -8 -70.86 -58.94 REMARK 500 8 LEU A -4 -72.99 -90.19 REMARK 500 8 ASN A 2 39.76 -161.73 REMARK 500 8 TYR A 3 39.24 -178.22 REMARK 500 8 SER A 10 110.02 -162.61 REMARK 500 8 LYS A 11 2.78 59.65 REMARK 500 8 VAL A 16 100.08 28.18 REMARK 500 8 VAL A 34 -73.36 -54.56 REMARK 500 8 VAL A 37 -71.57 -91.13 REMARK 500 8 ALA A 38 -74.83 -83.52 REMARK 500 8 SER A 39 3.19 -62.55 REMARK 500 8 ALA A 41 -81.08 -168.55 REMARK 500 8 SER A 43 31.44 -154.57 REMARK 500 9 LEU A -4 -67.54 -90.48 REMARK 500 9 TYR A 3 78.55 60.45 REMARK 500 9 VAL A 7 -161.70 -59.56 REMARK 500 9 SER A 8 -165.05 -67.75 REMARK 500 9 CYS A 9 -153.04 50.88 REMARK 500 9 LYS A 11 -40.46 -149.96 REMARK 500 9 THR A 12 -154.31 -151.01 REMARK 500 9 SER A 15 72.97 -161.84 REMARK 500 9 ASN A 17 95.80 -176.57 REMARK 500 9 VAL A 34 -71.82 -54.72 REMARK 500 9 VAL A 37 -69.11 -91.42 REMARK 500 9 ALA A 38 -74.96 -83.53 REMARK 500 9 SER A 39 4.76 -62.55 REMARK 500 9 ILE A 44 71.46 46.41 REMARK 500 10 ASN A 2 87.74 -161.76 REMARK 500 10 TYR A 3 -142.23 61.15 REMARK 500 10 ASN A 5 -43.42 -156.51 REMARK 500 10 VAL A 7 -161.66 41.10 REMARK 500 10 VAL A 34 -73.76 -54.68 REMARK 500 10 VAL A 37 -69.70 -91.51 REMARK 500 10 ALA A 38 -74.90 -83.40 REMARK 500 10 SER A 39 3.94 -62.66 REMARK 500 10 ALA A 41 -87.12 -62.00 REMARK 500 10 SER A 43 27.54 49.09 REMARK 500 11 GLU A -8 -77.58 -55.84 REMARK 500 11 VAL A 1 159.89 -45.91 REMARK 500 11 TYR A 3 71.97 63.99 REMARK 500 11 LYS A 11 1.40 59.81 REMARK 500 11 LYS A 13 175.50 -57.76 REMARK 500 11 VAL A 37 -69.26 -91.50 REMARK 500 11 ALA A 38 -74.83 -83.28 REMARK 500 11 SER A 39 12.66 -65.10 REMARK 500 11 ALA A 41 34.09 -169.76 REMARK 500 12 ASN A 2 63.71 -152.46 REMARK 500 12 VAL A 7 -162.50 41.08 REMARK 500 12 SER A 8 -159.21 -107.75 REMARK 500 12 CYS A 9 108.69 36.22 REMARK 500 12 LYS A 13 170.37 -47.24 REMARK 500 12 VAL A 34 -73.28 -54.68 REMARK 500 12 VAL A 37 -72.35 -91.48 REMARK 500 12 ALA A 38 -75.03 -83.37 REMARK 500 12 SER A 39 7.27 -63.20 REMARK 500 12 SER A 43 -80.94 -58.71 REMARK 500 13 GLU A -8 -74.10 -50.75 REMARK 500 13 GLN A -5 -135.96 -66.99 REMARK 500 13 VAL A 1 111.90 178.97 REMARK 500 13 ASN A 2 82.41 -161.85 REMARK 500 13 TYR A 3 80.26 58.86 REMARK 500 13 VAL A 7 -162.00 -58.80 REMARK 500 13 CYS A 14 53.39 -98.89 REMARK 500 13 VAL A 16 41.29 -96.44 REMARK 500 13 ASN A 17 69.96 61.25 REMARK 500 13 VAL A 34 -75.70 -54.73 REMARK 500 13 VAL A 37 -71.53 -91.29 REMARK 500 13 ALA A 38 -74.89 -83.34 REMARK 500 13 SER A 39 4.37 -62.55 REMARK 500 13 ALA A 41 -39.84 -171.94 REMARK 500 13 ILE A 44 44.49 -168.63 REMARK 500 14 GLU A -8 -73.18 -58.03 REMARK 500 14 ASN A 5 -69.27 -90.18 REMARK 500 14 SER A 10 114.09 -162.36 REMARK 500 14 THR A 12 2.79 -150.82 REMARK 500 14 VAL A 16 -164.11 -61.36 REMARK 500 14 VAL A 34 -75.11 -58.16 REMARK 500 14 VAL A 37 -60.59 -91.96 REMARK 500 14 ALA A 38 -73.45 -82.90 REMARK 500 14 ALA A 41 42.61 -164.11 REMARK 500 14 SER A 43 31.30 -151.34 REMARK 500 14 ILE A 44 52.29 -118.90 REMARK 500 15 ASN A -17 44.63 -90.41 REMARK 500 15 GLU A -8 -78.93 -60.21 REMARK 500 15 ASN A 2 69.92 -161.75 REMARK 500 15 VAL A 7 -161.42 40.74 REMARK 500 15 SER A 10 111.18 -168.02 REMARK 500 15 LYS A 11 2.89 59.10 REMARK 500 15 LYS A 13 -175.73 -53.86 REMARK 500 15 CYS A 14 -136.28 -117.61 REMARK 500 15 ASN A 17 57.70 -96.07 REMARK 500 15 VAL A 34 -72.32 -54.60 REMARK 500 15 VAL A 37 -70.96 -91.35 REMARK 500 15 ALA A 38 -75.04 -83.29 REMARK 500 15 SER A 39 5.10 -62.66 REMARK 500 16 GLU A -8 -78.98 -59.91 REMARK 500 16 ASN A 2 41.38 -140.67 REMARK 500 16 VAL A 7 -161.41 -75.12 REMARK 500 16 LYS A 13 -164.95 -67.69 REMARK 500 16 CYS A 14 -136.24 -124.67 REMARK 500 16 VAL A 34 -73.70 -54.63 REMARK 500 16 VAL A 37 -71.41 -91.35 REMARK 500 16 ALA A 38 -74.90 -83.48 REMARK 500 16 SER A 39 3.72 -62.58 REMARK 500 17 ASN A 2 40.22 -152.97 REMARK 500 17 TYR A 3 77.70 60.56 REMARK 500 17 VAL A 7 -160.53 -75.27 REMARK 500 17 SER A 8 174.02 54.00 REMARK 500 17 SER A 10 109.38 -172.03 REMARK 500 17 LYS A 11 3.31 58.47 REMARK 500 17 LYS A 13 -176.57 -53.43 REMARK 500 17 CYS A 14 -136.38 -117.45 REMARK 500 17 ASN A 17 41.99 -95.79 REMARK 500 17 VAL A 34 -74.61 -54.66 REMARK 500 17 VAL A 37 -70.99 -91.43 REMARK 500 17 ALA A 38 -74.62 -83.38 REMARK 500 17 SER A 39 3.31 -62.53 REMARK 500 17 SER A 43 -81.72 -106.20 REMARK 500 17 ILE A 44 89.88 -163.31 REMARK 500 18 LEU A -4 -68.10 -90.45 REMARK 500 18 TYR A 3 79.80 61.20 REMARK 500 18 SER A 10 112.63 -168.39 REMARK 500 18 THR A 12 30.17 -151.35 REMARK 500 18 LYS A 13 -160.95 50.18 REMARK 500 18 CYS A 14 -136.07 -108.62 REMARK 500 18 VAL A 37 -67.53 -91.86 REMARK 500 18 ALA A 38 -74.98 -83.41 REMARK 500 18 SER A 39 5.17 -62.59 REMARK 500 19 GLU A -8 -78.06 -55.84 REMARK 500 19 TYR A 3 80.12 43.29 REMARK 500 19 LYS A 11 4.30 59.34 REMARK 500 19 LYS A 13 -170.13 -54.97 REMARK 500 19 CYS A 14 -136.25 -112.74 REMARK 500 19 ASN A 17 42.78 -93.25 REMARK 500 19 VAL A 34 -75.85 -59.92 REMARK 500 19 ALA A 38 -74.35 -82.80 REMARK 500 19 SER A 39 1.61 -62.52 REMARK 500 19 ILE A 44 70.16 -163.35 REMARK 500 20 ASN A 2 69.26 -158.79 REMARK 500 20 VAL A 7 -161.82 41.25 REMARK 500 20 SER A 10 19.10 -156.48 REMARK 500 20 LYS A 11 -31.40 -162.05 REMARK 500 20 LYS A 13 28.89 -69.27 REMARK 500 20 CYS A 14 67.67 74.78 REMARK 500 20 SER A 15 90.61 -161.83 REMARK 500 20 VAL A 34 -73.99 -54.66 REMARK 500 20 VAL A 37 -71.33 -91.40 REMARK 500 20 ALA A 38 -74.99 -83.33 REMARK 500 20 SER A 39 7.71 -63.31 REMARK 500 20 ALA A 41 -44.01 -146.06 REMARK 500 20 ILE A 44 59.50 -103.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 1RY3 A -18 45 UNP P38580 CBB2_CARPI 1 64 SEQRES 1 A 64 MET ASN SER VAL LYS GLU LEU ASN VAL LYS GLU MET LYS SEQRES 2 A 64 GLN LEU HIS GLY GLY VAL ASN TYR GLY ASN GLY VAL SER SEQRES 3 A 64 CYS SER LYS THR LYS CYS SER VAL ASN TRP GLY GLN ALA SEQRES 4 A 64 PHE GLN GLU ARG TYR THR ALA GLY ILE ASN SER PHE VAL SEQRES 5 A 64 SER GLY VAL ALA SER GLY ALA GLY SER ILE GLY ARG HELIX 1 1 SER A -16 GLN A -5 1 12 HELIX 2 2 GLY A 19 ALA A 38 1 20 SSBOND 1 CYS A 9 CYS A 14 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 311 0 0 2 0 0 0 6 0 0 0 5 END