HEADER STRUCTURAL PROTEIN/RNA 25-NOV-03 1RLG TITLE MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO-CRYSTAL TITLE 2 STRUCTURE OF THE ARCHAEAL SRNP INTIATION COMPLEX CAVEAT 1RLG CHIRALITY ERROR AT CYT16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 25-MER; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 50S RIBOSOMAL PROTEIN L7AE; COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 5 ORGANISM_TAXID: 2234; SOURCE 6 GENE: RPL7AE, AF0764; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET13 KEYWDS PROTEIN-RNA, STRUCTURAL PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI REVDAT 3 18-APR-18 1RLG 1 REMARK REVDAT 2 24-FEB-09 1RLG 1 VERSN REVDAT 1 01-JUN-04 1RLG 0 JRNL AUTH T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI JRNL TITL MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTIONS; JRNL TITL 2 COCRYSTAL STRUCTURE OF ARCHAEAL L7AE AND A BOX C/D RNA. JRNL REF STRUCTURE V. 12 807 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15130473 JRNL DOI 10.1016/J.STR.2004.02.033 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 324127.190 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 28953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3738 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 348 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1774 REMARK 3 NUCLEIC ACID ATOMS : 1078 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 33.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 263 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99, 1.09, 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 0.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400,MAGNESIUM ACETATE, HEPES , PH REMARK 280 7.5, EVAPORATION, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS PACKED BY A DIMMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE OPERATIONS OF SPACE GROUP P23 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 MET B 1 REMARK 465 LYS B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PRO B 55 CD PRO B 56 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A C 7 C2' - C3' - O3' ANGL. DEV. = 15.4 DEGREES REMARK 500 C C 16 C2' - C3' - O3' ANGL. DEV. = 10.8 DEGREES REMARK 500 G C 17 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 U C 18 C2' - C3' - O3' ANGL. DEV. = 15.0 DEGREES REMARK 500 A D 7 C2' - C3' - O3' ANGL. DEV. = 14.6 DEGREES REMARK 500 C D 16 C2' - C3' - O3' ANGL. DEV. = 13.2 DEGREES REMARK 500 G D 17 C2' - C3' - O3' ANGL. DEV. = 13.2 DEGREES REMARK 500 U D 18 C2' - C3' - O3' ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 54 N - CA - C ANGL. DEV. = 22.8 DEGREES REMARK 500 PRO A 55 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 PRO A 55 C - N - CD ANGL. DEV. = -21.9 DEGREES REMARK 500 PRO A 56 C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 PRO A 56 C - N - CD ANGL. DEV. = -39.8 DEGREES REMARK 500 PRO B 56 C - N - CA ANGL. DEV. = 32.2 DEGREES REMARK 500 PRO B 56 C - N - CD ANGL. DEV. = -41.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 130.33 29.05 REMARK 500 PRO A 56 -80.39 81.37 REMARK 500 GLU A 57 -9.25 -57.75 REMARK 500 LYS A 77 -74.89 -52.26 REMARK 500 ARG A 104 -70.77 -27.06 REMARK 500 PHE B 5 137.73 176.81 REMARK 500 GLU B 24 -68.62 -98.30 REMARK 500 ASP B 52 32.81 -77.48 REMARK 500 PRO B 55 -176.41 -43.61 REMARK 500 PRO B 56 -95.86 82.49 REMARK 500 GLU B 68 -46.49 -151.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G D 6 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1RLG A 1 119 UNP O29494 RL7A_ARCFU 1 119 DBREF 1RLG B 1 119 UNP O29494 RL7A_ARCFU 1 119 DBREF 1RLG C 1 25 PDB 1RLG 1RLG 1 25 DBREF 1RLG D 1 25 PDB 1RLG 1RLG 1 25 SEQRES 1 C 25 G C 5BU C 5BU G A C C G A A A SEQRES 2 C 25 G G C G U G A 5BU G A G C SEQRES 1 D 25 G C 5BU C 5BU G A C C G A A A SEQRES 2 D 25 G G C G U G A 5BU G A G C SEQRES 1 A 119 MET TYR VAL ARG PHE GLU VAL PRO GLU ASP MET GLN ASN SEQRES 2 A 119 GLU ALA LEU SER LEU LEU GLU LYS VAL ARG GLU SER GLY SEQRES 3 A 119 LYS VAL LYS LYS GLY THR ASN GLU THR THR LYS ALA VAL SEQRES 4 A 119 GLU ARG GLY LEU ALA LYS LEU VAL TYR ILE ALA GLU ASP SEQRES 5 A 119 VAL ASP PRO PRO GLU ILE VAL ALA HIS LEU PRO LEU LEU SEQRES 6 A 119 CYS GLU GLU LYS ASN VAL PRO TYR ILE TYR VAL LYS SER SEQRES 7 A 119 LYS ASN ASP LEU GLY ARG ALA VAL GLY ILE GLU VAL PRO SEQRES 8 A 119 CYS ALA SER ALA ALA ILE ILE ASN GLU GLY GLU LEU ARG SEQRES 9 A 119 LYS GLU LEU GLY SER LEU VAL GLU LYS ILE LYS GLY LEU SEQRES 10 A 119 GLN LYS SEQRES 1 B 119 MET TYR VAL ARG PHE GLU VAL PRO GLU ASP MET GLN ASN SEQRES 2 B 119 GLU ALA LEU SER LEU LEU GLU LYS VAL ARG GLU SER GLY SEQRES 3 B 119 LYS VAL LYS LYS GLY THR ASN GLU THR THR LYS ALA VAL SEQRES 4 B 119 GLU ARG GLY LEU ALA LYS LEU VAL TYR ILE ALA GLU ASP SEQRES 5 B 119 VAL ASP PRO PRO GLU ILE VAL ALA HIS LEU PRO LEU LEU SEQRES 6 B 119 CYS GLU GLU LYS ASN VAL PRO TYR ILE TYR VAL LYS SER SEQRES 7 B 119 LYS ASN ASP LEU GLY ARG ALA VAL GLY ILE GLU VAL PRO SEQRES 8 B 119 CYS ALA SER ALA ALA ILE ILE ASN GLU GLY GLU LEU ARG SEQRES 9 B 119 LYS GLU LEU GLY SER LEU VAL GLU LYS ILE LYS GLY LEU SEQRES 10 B 119 GLN LYS MODRES 1RLG 5BU C 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU C 5 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU C 21 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 5 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 21 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE HET 5BU C 3 21 HET 5BU C 5 21 HET 5BU C 21 21 HET 5BU D 3 21 HET 5BU D 5 21 HET 5BU D 21 21 HETNAM 5BU 5-BROMO-URIDINE-5'-MONOPHOSPHATE FORMUL 1 5BU 6(C9 H12 BR N2 O9 P) HELIX 1 1 GLU A 9 GLY A 26 1 18 HELIX 2 2 GLY A 31 GLU A 40 1 10 HELIX 3 3 HIS A 61 LYS A 69 1 9 HELIX 4 4 SER A 78 VAL A 86 1 9 HELIX 5 5 GLU A 100 GLU A 102 5 3 HELIX 6 6 LEU A 103 GLY A 116 1 14 HELIX 7 7 PRO B 8 GLY B 26 1 19 HELIX 8 8 GLY B 31 ARG B 41 1 11 HELIX 9 9 HIS B 61 CYS B 66 1 6 HELIX 10 10 SER B 78 GLY B 87 1 10 HELIX 11 11 LEU B 103 LEU B 117 1 15 SHEET 1 A 4 LYS A 27 LYS A 30 0 SHEET 2 A 4 SER A 94 ASN A 99 -1 O ALA A 96 N LYS A 29 SHEET 3 A 4 LEU A 46 ALA A 50 -1 N TYR A 48 O ALA A 95 SHEET 4 A 4 TYR A 73 VAL A 76 1 O VAL A 76 N ILE A 49 SHEET 1 B 4 LYS B 27 LYS B 30 0 SHEET 2 B 4 SER B 94 ASN B 99 -1 O ALA B 96 N LYS B 29 SHEET 3 B 4 LEU B 46 ALA B 50 -1 N TYR B 48 O ALA B 95 SHEET 4 B 4 TYR B 73 VAL B 76 1 O VAL B 76 N ILE B 49 LINK O3' C C 2 P 5BU C 3 1555 1555 1.61 LINK O3' 5BU C 3 P C C 4 1555 1555 1.61 LINK O3' C C 4 P 5BU C 5 1555 1555 1.61 LINK O3' 5BU C 5 P G C 6 1555 1555 1.62 LINK O3' A C 20 P 5BU C 21 1555 1555 1.60 LINK O3' 5BU C 21 P G C 22 1555 1555 1.61 LINK O3' C D 2 P 5BU D 3 1555 1555 1.60 LINK O3' 5BU D 3 P C D 4 1555 1555 1.60 LINK O3' C D 4 P 5BU D 5 1555 1555 1.61 LINK O3' 5BU D 5 P G D 6 1555 1555 1.61 LINK O3' A D 20 P 5BU D 21 1555 1555 1.61 LINK O3' 5BU D 21 P G D 22 1555 1555 1.61 CISPEP 1 ASP A 54 PRO A 55 0 3.31 CISPEP 2 PRO A 55 PRO A 56 0 4.81 CISPEP 3 ASP B 54 PRO B 55 0 -0.20 CISPEP 4 PRO B 55 PRO B 56 0 4.40 CRYST1 120.584 120.584 120.584 90.00 90.00 90.00 P 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008293 0.00000 MASTER 359 0 6 11 8 0 0 6 0 0 0 24 END