HEADER ISOMERASE 17-NOV-03 1RII TITLE CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM M. TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHOGLYCEROMUTASE, PGAM, BPG-DEPENDENT PGAM, DPGM; COMPND 5 EC: 5.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GPMA, GPM, PGM, GPM1, RV0489, MT0508, MTCY20G9.15, MB0499; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PHOSPHOGLYERATE MUTASE, SH3 DOMAIN BINDING, STRUCTURAL GENOMICS, KEYWDS 2 TBSGC, PROTEIN STRUCTURE INITIATIVE, PSI, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MUELLER,M.R.SAWAYA,S.CHAN,Y.WU,I.PASHKOVA,J.PERRY,D.EISENBERG,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 6 11-OCT-17 1RII 1 REMARK REVDAT 5 13-JUL-11 1RII 1 VERSN REVDAT 4 24-FEB-09 1RII 1 VERSN REVDAT 3 12-APR-05 1RII 1 JRNL REVDAT 2 01-FEB-05 1RII 1 AUTHOR KEYWDS REMARK REVDAT 1 05-OCT-04 1RII 0 JRNL AUTH P.MULLER,M.R.SAWAYA,I.PASHKOV,S.CHAN,C.NGUYEN,Y.WU, JRNL AUTH 2 L.J.PERRY,D.EISENBERG JRNL TITL THE 1.70 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PHOSPHOGLYCERATE MUTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 309 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15735341 JRNL DOI 10.1107/S0907444904033190 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.221 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.219 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2664 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 111293 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.206 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.205 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2320 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 93546 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7846.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 6617.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 11 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 31673 REMARK 3 NUMBER OF RESTRAINTS : 31045 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 ANGLE DISTANCES (A) : 0.022 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.032 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.038 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.007 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.028 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: BULK SOLVENT WAS TREATED FOLLOWING THE BABINET REMARK 3 -PRINCIPLE REFINING TWO PARAMETERS, USING THE SWAT REMARK 3 COMMAND IN SHELXL. REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56. REMARK 3 HYDROGENS HAVE BEEN ADDED AT GEOMETRICALLY CALCULATED POSITIONS REMARK 3 AND REFINED USING A RIDING MODEL. REMARK 4 REMARK 4 1RII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SADABS (SHELDRICK REMARK 200 DATA SCALING SOFTWARE : SADABS V. 2003 (SHELDRICK) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06990 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45480 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 5PGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M MAGNESIUM CHLORIDE, REMARK 280 PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE HOMOTETRAMER FORMED BY THE REMARK 300 CHAINS A, B, C AND D WHICH FORMS THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 245 REMARK 465 GLN A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 GLY A 249 REMARK 465 GLY A 250 REMARK 465 VAL A 251 REMARK 465 PRO A 252 REMARK 465 ARG A 253 REMARK 465 GLY A 254 REMARK 465 ALA A 255 REMARK 465 ALA A 256 REMARK 465 ALA A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 240 REMARK 465 ALA B 241 REMARK 465 ALA B 242 REMARK 465 VAL B 243 REMARK 465 ALA B 244 REMARK 465 GLY B 245 REMARK 465 GLN B 246 REMARK 465 GLY B 247 REMARK 465 ARG B 248 REMARK 465 GLY B 249 REMARK 465 GLY B 250 REMARK 465 VAL B 251 REMARK 465 PRO B 252 REMARK 465 ARG B 253 REMARK 465 GLY B 254 REMARK 465 ALA B 255 REMARK 465 ALA B 256 REMARK 465 ALA B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 MET C 1 REMARK 465 GLY C 239 REMARK 465 ALA C 240 REMARK 465 ALA C 241 REMARK 465 ALA C 242 REMARK 465 VAL C 243 REMARK 465 ALA C 244 REMARK 465 GLY C 245 REMARK 465 GLN C 246 REMARK 465 GLY C 247 REMARK 465 ARG C 248 REMARK 465 GLY C 249 REMARK 465 GLY C 250 REMARK 465 VAL C 251 REMARK 465 PRO C 252 REMARK 465 ARG C 253 REMARK 465 GLY C 254 REMARK 465 ALA C 255 REMARK 465 ALA C 256 REMARK 465 ALA C 257 REMARK 465 LEU C 258 REMARK 465 GLU C 259 REMARK 465 HIS C 260 REMARK 465 HIS C 261 REMARK 465 HIS C 262 REMARK 465 HIS C 263 REMARK 465 HIS C 264 REMARK 465 HIS C 265 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 234 REMARK 465 ALA D 235 REMARK 465 ALA D 236 REMARK 465 ALA D 237 REMARK 465 ALA D 238 REMARK 465 GLY D 239 REMARK 465 ALA D 240 REMARK 465 ALA D 241 REMARK 465 ALA D 242 REMARK 465 VAL D 243 REMARK 465 ALA D 244 REMARK 465 GLY D 245 REMARK 465 GLN D 246 REMARK 465 GLY D 247 REMARK 465 ARG D 248 REMARK 465 GLY D 249 REMARK 465 GLY D 250 REMARK 465 VAL D 251 REMARK 465 PRO D 252 REMARK 465 ARG D 253 REMARK 465 GLY D 254 REMARK 465 ALA D 255 REMARK 465 ALA D 256 REMARK 465 ALA D 257 REMARK 465 LEU D 258 REMARK 465 GLU D 259 REMARK 465 HIS D 260 REMARK 465 HIS D 261 REMARK 465 HIS D 262 REMARK 465 HIS D 263 REMARK 465 HIS D 264 REMARK 465 HIS D 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 ARG C 118 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 118 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 128 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP C 166 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG D 83 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG D 83 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG D 83 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 84 CD - NE - CZ ANGL. DEV. = 23.7 DEGREES REMARK 500 ARG D 84 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 226 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG D 226 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 60.06 27.97 REMARK 500 LEU A 51 51.60 -114.90 REMARK 500 GLU A 90 157.26 -47.53 REMARK 500 THR A 150 156.72 179.60 REMARK 500 ALA A 182 -139.34 -148.97 REMARK 500 ALA A 242 -34.31 -38.87 REMARK 500 VAL A 243 156.58 -18.36 REMARK 500 LEU B 51 52.03 -116.81 REMARK 500 VAL B 167 -50.38 -122.49 REMARK 500 ALA B 182 -136.74 -154.76 REMARK 500 ALA B 237 2.56 -59.07 REMARK 500 VAL C 167 -54.72 -120.72 REMARK 500 ALA C 182 -137.25 -153.72 REMARK 500 LEU D 51 69.60 -114.76 REMARK 500 ALA D 182 -139.71 -151.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0489 RELATED DB: TARGETDB DBREF 1RII A 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII B 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII C 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII D 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 SEQADV 1RII GLY A 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL A 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO A 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG A 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY A 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU A 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU A 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY B 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL B 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO B 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG B 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY B 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU B 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU B 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY C 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL C 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO C 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG C 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY C 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU C 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU C 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY D 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL D 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO D 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG D 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY D 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU D 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU D 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 265 UNP P0A5R6 CLONING ARTIFACT SEQRES 1 A 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 A 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 A 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 A 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 A 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 A 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 A 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 A 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 A 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 A 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 A 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 A 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 A 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 A 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 A 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 A 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 A 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 A 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 A 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 A 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 B 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 B 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 B 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 B 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 B 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 B 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 B 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 B 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 B 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 B 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 B 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 B 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 B 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 B 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 B 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 B 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 B 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 B 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 B 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS SEQRES 1 C 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 C 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 C 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 C 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 C 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 C 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 C 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 C 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 C 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 C 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 C 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 C 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 C 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 C 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 C 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 C 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 C 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 C 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 C 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 C 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 C 265 HIS HIS HIS HIS HIS SEQRES 1 D 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 D 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 D 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 D 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 D 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 D 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 D 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 D 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 D 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 D 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 D 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 D 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 D 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 D 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 D 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 D 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 D 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 D 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 D 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 D 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 D 265 HIS HIS HIS HIS HIS HET GOL A 501 6 HET GOL B 502 6 HET GOL D 503 6 HET GOL D 504 6 HET GOL D 505 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *451(H2 O) HELIX 1 1 SER A 15 LEU A 20 1 6 HELIX 2 2 THR A 32 HIS A 49 1 18 HELIX 3 3 LEU A 61 ASP A 76 1 16 HELIX 4 4 TRP A 86 ASN A 89 5 4 HELIX 5 5 TYR A 93 GLN A 97 5 5 HELIX 6 6 ASP A 100 GLY A 109 1 10 HELIX 7 7 GLY A 109 SER A 119 1 11 HELIX 8 8 ASP A 138 GLY A 145 5 8 HELIX 9 9 CYS A 152 VAL A 167 1 16 HELIX 10 10 VAL A 167 VAL A 174 1 8 HELIX 11 11 HIS A 183 ASP A 195 1 13 HELIX 12 12 SER A 198 LEU A 205 1 8 HELIX 13 13 ASP A 232 VAL A 243 1 12 HELIX 14 14 SER B 15 ASN B 21 1 7 HELIX 15 15 THR B 32 HIS B 49 1 18 HELIX 16 16 LEU B 61 ASP B 76 1 16 HELIX 17 17 TRP B 86 ASN B 89 5 4 HELIX 18 18 TYR B 93 GLN B 97 5 5 HELIX 19 19 ASP B 100 SER B 119 1 20 HELIX 20 20 ASP B 138 GLY B 145 5 8 HELIX 21 21 CYS B 152 VAL B 167 1 16 HELIX 22 22 VAL B 167 VAL B 174 1 8 HELIX 23 23 HIS B 183 ASP B 195 1 13 HELIX 24 24 SER B 198 GLY B 204 1 7 HELIX 25 25 ASP B 232 ALA B 237 1 6 HELIX 26 26 SER C 15 LEU C 20 1 6 HELIX 27 27 THR C 32 HIS C 49 1 18 HELIX 28 28 LEU C 61 ALA C 75 1 15 HELIX 29 29 TRP C 86 ASN C 89 5 4 HELIX 30 30 TYR C 93 GLN C 97 5 5 HELIX 31 31 ASP C 100 GLY C 109 1 10 HELIX 32 32 GLY C 109 SER C 119 1 11 HELIX 33 33 ASP C 138 GLY C 145 5 8 HELIX 34 34 CYS C 152 VAL C 167 1 16 HELIX 35 35 VAL C 167 VAL C 174 1 8 HELIX 36 36 HIS C 183 ASP C 195 1 13 HELIX 37 37 GLU C 201 LEU C 205 5 5 HELIX 38 38 SER D 15 LEU D 20 1 6 HELIX 39 39 THR D 32 HIS D 49 1 18 HELIX 40 40 LEU D 61 ALA D 75 1 15 HELIX 41 41 TRP D 86 ASN D 89 5 4 HELIX 42 42 TYR D 93 GLN D 97 5 5 HELIX 43 43 ASP D 100 SER D 119 1 20 HELIX 44 44 ASP D 138 GLY D 145 5 8 HELIX 45 45 CYS D 152 VAL D 167 1 16 HELIX 46 46 VAL D 167 VAL D 174 1 8 HELIX 47 47 HIS D 183 GLN D 196 1 14 HELIX 48 48 SER D 198 VAL D 203 1 6 SHEET 1 A 6 VAL A 82 ARG A 84 0 SHEET 2 A 6 VAL A 55 THR A 58 1 N LEU A 56 O ARG A 83 SHEET 3 A 6 VAL A 178 ALA A 182 1 O VAL A 181 N TYR A 57 SHEET 4 A 6 SER A 6 ARG A 11 1 N VAL A 8 O VAL A 178 SHEET 5 A 6 LEU A 213 ASP A 216 -1 O TYR A 215 N LEU A 7 SHEET 6 A 6 THR A 229 TYR A 230 -1 O THR A 229 N ARG A 214 SHEET 1 B 6 VAL B 82 ARG B 84 0 SHEET 2 B 6 VAL B 55 THR B 58 1 N LEU B 56 O ARG B 83 SHEET 3 B 6 VAL B 178 ALA B 182 1 O LEU B 179 N TYR B 57 SHEET 4 B 6 SER B 6 ARG B 11 1 N VAL B 8 O VAL B 178 SHEET 5 B 6 LEU B 213 ASP B 216 -1 O TYR B 215 N LEU B 7 SHEET 6 B 6 THR B 229 TYR B 230 -1 O THR B 229 N ARG B 214 SHEET 1 C 6 VAL C 82 ARG C 84 0 SHEET 2 C 6 VAL C 55 THR C 58 1 N LEU C 56 O ARG C 83 SHEET 3 C 6 VAL C 178 ALA C 182 1 O LEU C 179 N TYR C 57 SHEET 4 C 6 LEU C 7 ARG C 11 1 N VAL C 8 O VAL C 178 SHEET 5 C 6 LEU C 213 TYR C 215 -1 O TYR C 215 N LEU C 7 SHEET 6 C 6 THR C 229 TYR C 230 -1 O THR C 229 N ARG C 214 SHEET 1 D 6 VAL D 82 ARG D 84 0 SHEET 2 D 6 VAL D 55 THR D 58 1 N LEU D 56 O ARG D 83 SHEET 3 D 6 VAL D 178 ALA D 182 1 O LEU D 179 N TYR D 57 SHEET 4 D 6 LEU D 7 ARG D 11 1 N VAL D 8 O VAL D 178 SHEET 5 D 6 LEU D 213 TYR D 215 -1 O TYR D 215 N LEU D 7 SHEET 6 D 6 THR D 229 TYR D 230 -1 O THR D 229 N ARG D 214 SITE 1 AC1 7 HIS A 12 SER A 15 ASN A 18 THR A 24 SITE 2 AC1 7 ARG A 63 GLU A 90 HOH A 622 SITE 1 AC2 9 HIS B 12 SER B 15 ASN B 18 THR B 24 SITE 2 AC2 9 ARG B 63 GLU B 90 HIS B 183 HOH B 607 SITE 3 AC2 9 HOH B1001 SITE 1 AC3 9 HIS D 12 SER D 15 ASN D 18 THR D 24 SITE 2 AC3 9 ARG D 63 GLU D 90 HIS D 183 HOH D 636 SITE 3 AC3 9 HOH D 814 SITE 1 AC4 2 GLN D 132 HOH D 939 SITE 1 AC5 5 ARG C 83 TYR D 57 ARG D 83 VAL D 167 SITE 2 AC5 5 HOH D 888 CRYST1 58.914 136.790 65.929 90.00 97.78 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016974 0.000000 0.002319 0.00000 SCALE2 0.000000 0.007310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015309 0.00000 MASTER 388 0 5 48 24 0 11 6 0 0 0 84 END