HEADER HORMONE/GROWTH FACTOR 16-NOV-03 1RI0 TITLE NMR STRUCTURE OF THE N-TERMINAL HATH DOMAIN OF HUMAN HDGF COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL 100 RESIDUES; COMPND 5 SYNONYM: THE HATH DOMAIN OF HHDGF, HDGF, HIGH-MOBILITY COMPND 6 GROUP PROTEIN 1-LIKE 2, HMG-1L2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDGF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS HDGF, HATH DOMAIN, PWWP DOMAIN, HEPARIN-BINDING, GROWTH KEYWDS 2 FACTOR, HORMONE/GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.-C.SUE,J.-Y.CHEN,T.-H.HUANG REVDAT 2 24-FEB-09 1RI0 1 VERSN REVDAT 1 16-NOV-04 1RI0 0 JRNL AUTH S.-C.SUE,J.-Y.CHEN,S.-C.LEE,W.-G.WU,T.-H.HUANG JRNL TITL SOLUTION STRUCTURE AND HEPARIN INTERACTION OF JRNL TITL 2 HUMAN HEPATOMA-DERIVED GROWTH FACTOR JRNL REF J.MOL.BIOL. V. 343 1365 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15491618 JRNL DOI 10.1016/J.JMB.2004.09.014 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.5 REMARK 3 AUTHORS : PETER GUNTERT, TORSTEN HERRMANN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1507 RESTRAINTS, INCLUDING 1245 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 196 DIHEDRAL ANGLE RESTRAINTS, 66 DISTANCE REMARK 3 RESTRAINTS OF HYDROGEN BONDS. REMARK 4 REMARK 4 1RI0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020759. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 TO 3MM 15N AND 13C UNIFORM REMARK 210 LABELED PROTEIN, 100MM REMARK 210 PHOSPHATE BUFFER, 150MM NACL, REMARK 210 1MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, AURELIA 2.8.13, REMARK 210 CYANA 1.0.5 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED BY USING STANDARD TRIPLE- REMARK 210 RESONANCE NMR SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 140.57 -179.65 REMARK 500 1 ARG A 6 -178.50 -69.93 REMARK 500 1 GLN A 7 -82.98 -102.17 REMARK 500 1 GLU A 35 41.92 -144.57 REMARK 500 1 ALA A 36 -70.16 -106.14 REMARK 500 1 LYS A 44 147.26 -173.20 REMARK 500 1 HIS A 53 39.35 74.29 REMARK 500 1 LYS A 72 -65.77 -103.60 REMARK 500 1 PHE A 73 -72.32 -131.44 REMARK 500 1 LYS A 96 -38.65 -178.99 REMARK 500 2 ASN A 5 -171.23 -54.06 REMARK 500 2 ARG A 6 -178.38 -66.69 REMARK 500 2 LYS A 8 -40.80 -141.22 REMARK 500 2 GLU A 9 98.38 -59.43 REMARK 500 2 GLU A 35 33.46 -142.48 REMARK 500 2 ALA A 36 -70.07 -99.66 REMARK 500 2 ASN A 43 -43.58 -163.01 REMARK 500 2 HIS A 53 37.84 74.54 REMARK 500 2 LYS A 72 -69.05 -104.30 REMARK 500 2 PHE A 73 -83.52 -133.05 REMARK 500 2 LYS A 96 -43.66 -171.53 REMARK 500 2 SER A 98 160.36 62.64 REMARK 500 3 LYS A 8 -40.90 -141.12 REMARK 500 3 GLU A 9 97.68 -58.34 REMARK 500 3 CYS A 12 136.20 -39.19 REMARK 500 3 GLU A 35 36.08 -145.59 REMARK 500 3 ALA A 36 -65.79 -104.58 REMARK 500 3 LYS A 44 147.26 -172.48 REMARK 500 3 HIS A 53 39.14 74.61 REMARK 500 3 LYS A 72 -67.67 -101.28 REMARK 500 3 PHE A 73 -85.35 -132.55 REMARK 500 3 LYS A 96 -36.76 179.70 REMARK 500 4 LYS A 8 -38.38 -140.60 REMARK 500 4 ASN A 43 -32.39 168.93 REMARK 500 4 HIS A 53 40.71 70.69 REMARK 500 4 LYS A 72 -67.60 -104.00 REMARK 500 4 PHE A 73 -75.64 -132.83 REMARK 500 4 VAL A 95 98.49 -56.53 REMARK 500 5 ARG A 6 -177.35 -64.43 REMARK 500 5 GLN A 7 -71.30 -115.14 REMARK 500 5 GLU A 35 31.41 -144.04 REMARK 500 5 ALA A 36 -62.89 -106.35 REMARK 500 5 ASN A 43 -33.86 171.22 REMARK 500 5 HIS A 53 40.21 72.19 REMARK 500 5 LYS A 72 -66.70 -93.44 REMARK 500 5 PHE A 73 -52.48 -133.09 REMARK 500 5 LYS A 96 -43.02 -163.94 REMARK 500 5 ALA A 97 102.82 -42.04 REMARK 500 6 GLN A 7 -126.30 -60.62 REMARK 500 6 ASN A 43 82.30 40.54 REMARK 500 6 HIS A 53 38.69 74.41 REMARK 500 6 LYS A 72 -67.81 -93.74 REMARK 500 6 PHE A 73 -66.48 -132.64 REMARK 500 6 THR A 94 49.24 -150.34 REMARK 500 6 ALA A 97 97.50 -70.00 REMARK 500 7 LYS A 8 -36.92 -140.58 REMARK 500 7 GLU A 35 29.52 -146.07 REMARK 500 7 LYS A 39 76.60 -106.58 REMARK 500 7 ASN A 43 -32.99 169.78 REMARK 500 7 HIS A 53 38.14 74.44 REMARK 500 7 LYS A 72 -68.13 -106.38 REMARK 500 7 PHE A 73 -85.56 -133.06 REMARK 500 7 VAL A 95 99.60 -58.35 REMARK 500 7 SER A 98 -61.26 -157.84 REMARK 500 8 SER A 2 109.90 -174.76 REMARK 500 8 LYS A 8 -36.11 -140.69 REMARK 500 8 LYS A 44 141.53 -175.41 REMARK 500 8 HIS A 53 37.44 74.29 REMARK 500 8 PHE A 73 -76.08 -127.71 REMARK 500 8 LYS A 80 -73.73 -64.77 REMARK 500 9 ARG A 6 -176.92 -62.57 REMARK 500 9 LYS A 8 -40.20 -140.12 REMARK 500 9 GLU A 9 80.91 -60.19 REMARK 500 9 ALA A 36 -70.59 -100.45 REMARK 500 9 ASN A 43 -43.62 -163.49 REMARK 500 9 HIS A 53 38.00 74.82 REMARK 500 9 LYS A 72 -66.44 -98.36 REMARK 500 9 PHE A 73 -81.89 -132.25 REMARK 500 10 LYS A 8 -40.40 -141.67 REMARK 500 10 GLU A 35 36.23 -144.08 REMARK 500 10 ALA A 36 -66.36 -107.07 REMARK 500 10 ASN A 43 -33.30 170.35 REMARK 500 10 HIS A 53 38.95 74.44 REMARK 500 10 LYS A 72 -68.35 -106.03 REMARK 500 10 PHE A 73 -81.68 -132.81 REMARK 500 10 ASN A 77 172.64 -49.80 REMARK 500 10 SER A 98 162.71 59.65 REMARK 500 11 ASN A 5 170.53 -57.34 REMARK 500 11 LYS A 8 -38.05 -140.63 REMARK 500 11 LYS A 39 64.51 -107.29 REMARK 500 11 ASN A 43 -32.17 167.25 REMARK 500 11 HIS A 53 37.48 74.31 REMARK 500 11 LYS A 72 -68.60 -91.59 REMARK 500 11 PHE A 73 -52.92 -133.89 REMARK 500 11 THR A 94 48.34 -149.80 REMARK 500 12 GLN A 7 -79.08 -96.64 REMARK 500 12 GLU A 35 31.71 -144.57 REMARK 500 12 ALA A 36 -71.43 -101.36 REMARK 500 12 ALA A 42 175.25 -49.32 REMARK 500 12 ASN A 43 38.15 80.48 REMARK 500 12 LYS A 72 -67.51 -104.14 REMARK 500 12 PHE A 73 -82.77 -132.37 REMARK 500 12 LYS A 96 -43.85 -175.98 REMARK 500 13 LYS A 8 -39.76 -141.45 REMARK 500 13 GLU A 35 30.10 -145.32 REMARK 500 13 ALA A 36 -60.44 -95.51 REMARK 500 13 ASN A 43 -29.66 163.34 REMARK 500 13 HIS A 53 38.69 74.27 REMARK 500 13 LYS A 72 -70.09 -77.06 REMARK 500 13 PHE A 73 -54.30 -131.48 REMARK 500 13 LYS A 78 87.78 -69.06 REMARK 500 13 LYS A 96 -38.84 -175.40 REMARK 500 13 ALA A 97 77.64 -100.22 REMARK 500 13 SER A 98 -55.31 178.10 REMARK 500 14 GLN A 7 -110.17 -108.87 REMARK 500 14 ALA A 36 -77.97 -109.12 REMARK 500 14 LYS A 39 -148.99 -74.67 REMARK 500 14 ASN A 43 56.73 38.97 REMARK 500 14 LYS A 44 137.94 -171.53 REMARK 500 14 HIS A 53 39.71 73.29 REMARK 500 14 LYS A 72 -68.17 -106.43 REMARK 500 14 PHE A 73 -77.33 -132.93 REMARK 500 14 VAL A 95 107.22 -45.03 REMARK 500 14 SER A 98 177.21 82.44 REMARK 500 15 GLN A 7 -112.99 -105.70 REMARK 500 15 HIS A 25 118.40 -39.42 REMARK 500 15 ASN A 43 82.66 42.12 REMARK 500 15 HIS A 53 38.35 73.57 REMARK 500 15 LYS A 72 -69.60 -106.98 REMARK 500 15 PHE A 73 -86.05 -132.95 REMARK 500 16 GLN A 7 -63.73 -102.99 REMARK 500 16 ALA A 36 -98.09 -89.21 REMARK 500 16 HIS A 53 38.06 74.60 REMARK 500 16 LYS A 72 -69.08 -106.53 REMARK 500 16 PHE A 73 -84.64 -133.12 REMARK 500 16 LYS A 96 -42.43 -175.34 REMARK 500 17 ARG A 3 156.29 -39.33 REMARK 500 17 ARG A 6 -175.17 -57.71 REMARK 500 17 GLU A 9 -172.08 -53.84 REMARK 500 17 GLU A 35 46.64 -83.93 REMARK 500 17 LYS A 39 -79.13 -48.14 REMARK 500 17 SER A 40 -62.62 -146.10 REMARK 500 17 HIS A 53 38.82 73.95 REMARK 500 17 LYS A 72 -67.69 -98.67 REMARK 500 17 PHE A 73 -63.82 -132.53 REMARK 500 17 LYS A 80 -70.78 -64.59 REMARK 500 18 GLN A 7 -81.80 -100.50 REMARK 500 18 HIS A 25 128.96 -39.52 REMARK 500 18 GLU A 35 34.64 -148.01 REMARK 500 18 ALA A 36 -86.75 -73.71 REMARK 500 18 ASN A 43 72.66 40.44 REMARK 500 18 LYS A 44 145.24 -175.35 REMARK 500 18 HIS A 53 38.29 70.38 REMARK 500 18 LYS A 72 -67.49 -97.65 REMARK 500 18 PHE A 73 -66.70 -132.75 REMARK 500 18 VAL A 95 100.93 -53.35 REMARK 500 19 GLN A 7 -115.00 -100.93 REMARK 500 19 GLU A 35 20.99 -150.92 REMARK 500 19 ALA A 36 -75.68 -73.34 REMARK 500 19 HIS A 53 38.43 74.06 REMARK 500 19 LYS A 72 -66.66 -103.15 REMARK 500 19 PHE A 73 -82.52 -132.09 REMARK 500 19 LYS A 96 -39.93 -174.14 REMARK 500 19 SER A 98 -62.95 -120.95 REMARK 500 20 ARG A 3 149.46 -38.74 REMARK 500 20 LYS A 8 -39.87 -142.11 REMARK 500 20 ALA A 36 -60.67 -106.88 REMARK 500 20 ASN A 43 -34.85 174.19 REMARK 500 20 HIS A 53 36.52 74.30 REMARK 500 20 LYS A 72 -69.75 -106.23 REMARK 500 20 PHE A 73 -82.50 -133.37 REMARK 500 20 LYS A 96 -41.90 -172.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KHC RELATED DB: PDB REMARK 900 DNA METHYLTRANSFERASE, DNMT3B REMARK 900 RELATED ID: 1H3Z RELATED DB: PDB REMARK 900 S. POMBE PROTEIN SPBC215.07C REMARK 900 RELATED ID: 6541 RELATED DB: BMRB REMARK 900 S. POMBE PROTEIN SPBC215.07C DBREF 1RI0 A 1 100 UNP P51858 HDGF_HUMAN 1 100 SEQADV 1RI0 MET A -9 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -8 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -7 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -6 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -5 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -4 UNP P51858 EXPRESSION TAG SEQADV 1RI0 HIS A -3 UNP P51858 EXPRESSION TAG SEQADV 1RI0 ALA A -2 UNP P51858 EXPRESSION TAG SEQADV 1RI0 MET A -1 UNP P51858 EXPRESSION TAG SEQADV 1RI0 ALA A 0 UNP P51858 EXPRESSION TAG SEQRES 1 A 110 MET HIS HIS HIS HIS HIS HIS ALA MET ALA MET SER ARG SEQRES 2 A 110 SER ASN ARG GLN LYS GLU TYR LYS CYS GLY ASP LEU VAL SEQRES 3 A 110 PHE ALA LYS MET LYS GLY TYR PRO HIS TRP PRO ALA ARG SEQRES 4 A 110 ILE ASP GLU MET PRO GLU ALA ALA VAL LYS SER THR ALA SEQRES 5 A 110 ASN LYS TYR GLN VAL PHE PHE PHE GLY THR HIS GLU THR SEQRES 6 A 110 ALA PHE LEU GLY PRO LYS ASP LEU PHE PRO TYR GLU GLU SEQRES 7 A 110 SER LYS GLU LYS PHE GLY LYS PRO ASN LYS ARG LYS GLY SEQRES 8 A 110 PHE SER GLU GLY LEU TRP GLU ILE GLU ASN ASN PRO THR SEQRES 9 A 110 VAL LYS ALA SER GLY TYR HELIX 1 1 TYR A 66 LYS A 72 1 7 HELIX 2 2 LYS A 80 GLU A 90 1 11 SHEET 1 A 5 GLU A 54 LEU A 58 0 SHEET 2 A 5 TYR A 45 PHE A 49 -1 N PHE A 49 O GLU A 54 SHEET 3 A 5 TYR A 23 ASP A 31 -1 N ARG A 29 O PHE A 48 SHEET 4 A 5 LEU A 15 MET A 20 -1 N ALA A 18 O TRP A 26 SHEET 5 A 5 LEU A 63 PHE A 64 -1 O PHE A 64 N PHE A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 269 0 0 2 5 0 0 6 0 0 0 9 END