HEADER NUCLEOTIDYLTRANSFERASE 28-APR-98 1RDR TITLE POLIOVIRUS 3D POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLIOVIRUS 3D POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: CDNA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT5T-3D KEYWDS NUCLEOTIDYLTRANSFERASE, POLIOVIRUS, 3D, RNA-DEPENDENT, POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HANSEN,A.LONG,S.SCHULTZ REVDAT 3 13-JUL-11 1RDR 1 VERSN REVDAT 2 24-FEB-09 1RDR 1 VERSN REVDAT 1 16-SEP-98 1RDR 0 JRNL AUTH J.L.HANSEN,A.M.LONG,S.C.SCHULTZ JRNL TITL STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE OF POLIOVIRUS. JRNL REF STRUCTURE V. 5 1109 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9309225 JRNL DOI 10.1016/S0969-2126(97)00261-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.R.RACANIELLO,D.BALTIMORE REMARK 1 TITL MOLECULAR CLONING OF POLIOVIRUS CDNA AND DETERMINATION OF REMARK 1 TITL 2 THE COMPLETE NUCLEOTIDE SEQUENCE OF THE VIRAL GENOME REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 78 4887 1981 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.KITAMURA,V.V.E.WIMMER REMARK 1 TITL SEQUENCE OF 1060 3'-TERMINAL NUCLEOTIDES OF POLIOVIRUS RNA REMARK 1 TITL 2 AS DETERMINED BY A MODIFICATION OF THE DIDEOXYNUCLEOTIDE REMARK 1 TITL 3 METHOD REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 77 3196 1980 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 286501.920 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 64.7 REMARK 3 NUMBER OF REFLECTIONS : 18121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 485 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.056 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.590 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.820 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : OPLS_SMALL.PARAMETER REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : OPLS_NEW.TOPOLOGY REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 243 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: HEAVY ATOM ISOMORPHOUS REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE R-FACTOR CALCULATED DURING DATA REDUCTION FOR THE REMARK 200 HIGHEST RESOLUTION SHELL DOES NOT ACCURATELY REPRESENT THE DATA. REMARK 200 THE DATA WERE ANISOTROPIC, AND AFTER REDUCTION WERE REMARK 200 ANISOTROPICALLY TRUNCATED WITH AN ELLIPSOIDAL BOUNDARY AT I/ REMARK 200 SIGMA=2. THIS RESULTED IN A SHELL WITH A MAJOR AXIS OF 2.4 A REMARK 200 RESOLUTION (IN THE C* DIRECTION) AND A MINOR AXIS OF 2.8 (IN THE REMARK 200 A* AND B* DIRECTIONS). THEREFORE ABOUT 90% OF THE REFLECTIONS REMARK 200 WHICH WERE USED TO CALCULATE AN R-FACTOR FOR THE HIGHEST REMARK 200 RESOLUTION SHELL WERE EXCLUDED FROM REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.59667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.79833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.79833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.59667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 4 REMARK 465 TRP A 5 REMARK 465 MET A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 42 REMARK 465 LEU A 43 REMARK 465 THR A 44 REMARK 465 LYS A 45 REMARK 465 ASN A 46 REMARK 465 ASP A 47 REMARK 465 PRO A 48 REMARK 465 ARG A 49 REMARK 465 LEU A 50 REMARK 465 LYS A 51 REMARK 465 THR A 52 REMARK 465 ASP A 53 REMARK 465 PHE A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 57 REMARK 465 ILE A 58 REMARK 465 PHE A 59 REMARK 465 SER A 60 REMARK 465 LYS A 61 REMARK 465 TYR A 62 REMARK 465 VAL A 63 REMARK 465 GLY A 64 REMARK 465 ASN A 65 REMARK 465 LYS A 66 REMARK 465 GLU A 98 REMARK 465 ASP A 99 REMARK 465 ALA A 100 REMARK 465 MET A 101 REMARK 465 TYR A 102 REMARK 465 GLY A 103 REMARK 465 THR A 104 REMARK 465 ASP A 105 REMARK 465 GLY A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 ALA A 109 REMARK 465 LEU A 110 REMARK 465 ASP A 111 REMARK 465 LEU A 112 REMARK 465 SER A 113 REMARK 465 THR A 114 REMARK 465 SER A 115 REMARK 465 ALA A 116 REMARK 465 GLY A 117 REMARK 465 TYR A 118 REMARK 465 PRO A 119 REMARK 465 TYR A 120 REMARK 465 VAL A 121 REMARK 465 ALA A 122 REMARK 465 MET A 123 REMARK 465 GLY A 124 REMARK 465 LYS A 125 REMARK 465 LYS A 126 REMARK 465 LYS A 127 REMARK 465 ARG A 128 REMARK 465 ASP A 129 REMARK 465 ILE A 130 REMARK 465 LEU A 131 REMARK 465 ASN A 132 REMARK 465 LYS A 133 REMARK 465 GLN A 134 REMARK 465 THR A 135 REMARK 465 ARG A 136 REMARK 465 ASP A 137 REMARK 465 THR A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 MET A 141 REMARK 465 GLN A 142 REMARK 465 LYS A 143 REMARK 465 LEU A 144 REMARK 465 LEU A 145 REMARK 465 ASP A 146 REMARK 465 THR A 147 REMARK 465 TYR A 148 REMARK 465 GLY A 149 REMARK 465 ILE A 150 REMARK 465 ASN A 151 REMARK 465 LEU A 152 REMARK 465 PRO A 153 REMARK 465 LEU A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 TYR A 157 REMARK 465 VAL A 158 REMARK 465 LYS A 159 REMARK 465 ASP A 160 REMARK 465 GLU A 161 REMARK 465 LEU A 162 REMARK 465 ARG A 163 REMARK 465 SER A 164 REMARK 465 LYS A 165 REMARK 465 THR A 166 REMARK 465 LYS A 167 REMARK 465 VAL A 168 REMARK 465 GLU A 169 REMARK 465 GLN A 170 REMARK 465 GLY A 171 REMARK 465 LYS A 172 REMARK 465 SER A 173 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 ALA A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 LEU A 181 REMARK 465 HIS A 270 REMARK 465 SER A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 LYS A 276 REMARK 465 ASN A 277 REMARK 465 LYS A 278 REMARK 465 THR A 279 REMARK 465 TYR A 280 REMARK 465 CYS A 281 REMARK 465 VAL A 282 REMARK 465 LYS A 283 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 MET A 286 REMARK 465 PRO A 287 REMARK 465 SER A 288 REMARK 465 GLY A 289 REMARK 465 CYS A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 37 CG1 CG2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 LEU A 97 CG CD1 CD2 REMARK 470 TYR A 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 20 -179.79 -67.51 REMARK 500 SER A 184 64.82 -61.72 REMARK 500 VAL A 210 106.13 -50.96 REMARK 500 TYR A 237 -75.38 -40.70 REMARK 500 LEU A 268 -22.41 -141.62 REMARK 500 LYS A 359 87.05 42.64 REMARK 500 LYS A 375 9.59 59.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 233 OD1 REMARK 620 2 HOH A 655 O 96.3 REMARK 620 3 HOH A 698 O 80.5 75.7 REMARK 620 4 ASP A 329 OD1 164.2 92.6 89.2 REMARK 620 5 HOH A 699 O 95.8 146.4 137.4 83.7 REMARK 620 6 HOH A 685 O 91.2 140.7 67.6 73.7 70.1 REMARK 620 7 HOH A 697 O 107.8 73.8 149.1 87.2 72.6 139.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD1 REMARK 620 2 ASP A 89 OD2 48.3 REMARK 620 3 GLU A 26 OE1 110.4 70.0 REMARK 620 4 PRO A 27 O 73.7 94.6 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 DBREF 1RDR A 1 461 UNP P03300 POLH_POL1M 1748 2208 SEQRES 1 A 461 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 461 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 461 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 461 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 461 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 461 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 461 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 461 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 461 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 461 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 461 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 461 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 461 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 461 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 461 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 461 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 461 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 461 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 461 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 461 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 461 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 461 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 461 PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 461 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 461 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 461 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 461 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 461 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 461 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 461 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 461 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 461 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 461 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 461 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 461 ARG ALA LEU LEU LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 461 ARG TRP LEU ASP SER PHE HET CA A 501 1 HET CA A 502 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *107(H2 O) HELIX 1 1 LYS A 22 LYS A 24 5 3 HELIX 2 2 GLU A 72 LEU A 88 1 17 HELIX 3 3 MET A 187 ALA A 190 1 4 HELIX 4 4 GLY A 192 LYS A 200 1 9 HELIX 5 5 PRO A 214 LEU A 224 1 11 HELIX 6 6 TYR A 237 SER A 240 1 4 HELIX 7 7 PRO A 243 LYS A 255 1 13 HELIX 8 8 VAL A 262 ILE A 265 5 4 HELIX 9 9 THR A 293 THR A 312 1 20 HELIX 10 10 LEU A 318 HIS A 320 5 3 HELIX 11 11 ALA A 340 TYR A 350 1 11 HELIX 12 12 MET A 394 ARG A 402 1 9 HELIX 13 13 THR A 410 ASN A 424 1 15 HELIX 14 14 GLU A 426 SER A 438 1 13 HELIX 15 15 PRO A 440 ALA A 444 1 5 HELIX 16 16 TYR A 450 ASP A 459 1 10 SHEET 1 A 3 LYS A 228 ALA A 231 0 SHEET 2 A 3 ASP A 329 TYR A 334 -1 N TYR A 334 O LYS A 228 SHEET 3 A 3 ILE A 324 TYR A 326 -1 N TYR A 326 O ASP A 329 SHEET 1 B 2 ARG A 376 ALA A 380 0 SHEET 2 B 2 ILE A 388 MET A 392 -1 N VAL A 391 O PHE A 377 LINK CA CA A 501 OD1 ASP A 233 1555 1555 2.34 LINK CA CA A 501 O HOH A 655 1555 1555 2.72 LINK CA CA A 501 O HOH A 698 1555 1555 2.68 LINK CA CA A 501 OD1 ASP A 329 1555 1555 2.43 LINK CA CA A 501 O HOH A 699 1555 1555 2.46 LINK CA CA A 501 O HOH A 685 1555 1555 2.79 LINK CA CA A 501 O HOH A 697 1555 1555 2.73 LINK CA CA A 502 OD1 ASP A 89 1555 1555 2.82 LINK CA CA A 502 OD2 ASP A 89 1555 1555 2.57 LINK CA CA A 502 OE1 GLU A 26 1555 2664 2.63 LINK CA CA A 502 O PRO A 27 1555 2664 2.61 SITE 1 AC1 7 ASP A 233 ASP A 329 HOH A 655 HOH A 685 SITE 2 AC1 7 HOH A 697 HOH A 698 HOH A 699 SITE 1 AC2 3 GLU A 26 PRO A 27 ASP A 89 CRYST1 88.131 88.131 158.395 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011347 0.006551 0.000000 0.00000 SCALE2 0.000000 0.013102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006313 0.00000 MASTER 463 0 2 16 5 0 3 6 0 0 0 36 END