HEADER ENDONUCLEASE 23-JUN-95 1RCH TITLE SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA TITLE 2 COLI, 8 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE HI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE H; COMPND 5 EC: 3.1.26.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS HYDROLASE, NUCLEASE, ENDONUCLEASE, MAGNESIUM, 3D-STRUCTURE EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR T.YAMAZAKI,M.FUJIWARA,T.KATO,K.YAMASAKI,K.NAGAYAMA REVDAT 3 24-FEB-09 1RCH 1 VERSN REVDAT 2 22-FEB-05 1RCH 1 JRNL REVDAT 1 12-FEB-97 1RCH 0 JRNL AUTH M.FUJIWARA,T.KATO,T.YAMAZAKI,K.YAMASAKI,K.NAGAYAMA JRNL TITL SOLUTION STRUCTURE OF RIBONUCLEASE HI FROM JRNL TITL 2 ESCHERICHIA COLI JRNL REF BIOL.PHARM.BULL. V. 23 1147 2000 JRNL REFN ISSN 0918-6158 JRNL PMID 11041241 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.YAMAZAKI,M.YOSHIDA,K.NAGAYAMA REMARK 1 TITL COMPLETE ASSIGNMENTS OF MAGNETIC RESONANCES OF REMARK 1 TITL 2 RIBONUCLEASE H FROM ESCHERICHIA COLI BY DOUBLE-AND REMARK 1 TITL 3 TRIPLE-RESONANCE 2D AND 3D NMR SPECTROSCOPIES REMARK 1 REF BIOCHEMISTRY V. 32 5656 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.ENDO,H.WAKO,K.NAGAYAMA,N.GO REMARK 1 TITL A NEW VERSION OF DADAS (DISTANCE ANALYSIS IN REMARK 1 TITL 2 DIHEDRAL ANGLE SPACE) AND ITS PERFORMANCE REMARK 1 EDIT J.C.HOCH, F.M.POULSEN, C.REDFIELD REMARK 1 REF COMPUTATIONAL ASPECTS OF 233 1991 REMARK 1 REF 2 THE STUDY OF BIOLOGICAL REMARK 1 REF 3 MACROMOLECULES BY NUCLEAR REMARK 1 REF 4 MAGNETIC RESONANCE REMARK 1 REF 5 SPECTROSCOPY (IN: NATO ASI REMARK 1 REF 6 SER.,SER.A, V.225) REMARK 1 PUBL NEW YORK : PLENUM PRESS REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DADAS90 REMARK 3 AUTHORS : JEOL.LTD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RCH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 10 108.08 -160.37 REMARK 500 1 ASN A 16 76.71 -176.60 REMARK 500 1 TYR A 28 -165.01 -111.67 REMARK 500 1 ARG A 29 97.03 -54.81 REMARK 500 1 GLU A 61 105.25 179.18 REMARK 500 1 HIS A 62 97.18 -55.68 REMARK 500 1 ASP A 70 31.99 -156.15 REMARK 500 1 THR A 79 39.29 -94.71 REMARK 500 1 GLN A 80 -51.70 -158.85 REMARK 500 1 ASP A 94 32.88 -99.54 REMARK 500 1 LYS A 95 90.38 50.91 REMARK 500 1 GLN A 113 -52.25 -147.56 REMARK 500 1 HIS A 124 -52.58 -151.46 REMARK 500 1 ALA A 125 35.58 -93.91 REMARK 500 1 MET A 142 33.09 -95.75 REMARK 500 1 ASN A 143 72.68 -160.39 REMARK 500 1 THR A 145 38.68 -148.74 REMARK 500 2 ASP A 10 92.92 -160.69 REMARK 500 2 ASN A 16 77.66 -168.24 REMARK 500 2 ARG A 29 94.89 -58.98 REMARK 500 2 LEU A 59 97.59 -61.83 REMARK 500 2 LYS A 60 46.20 -96.18 REMARK 500 2 ASP A 70 34.70 -160.15 REMARK 500 2 THR A 79 40.82 -93.98 REMARK 500 2 GLN A 80 -51.12 -152.50 REMARK 500 2 ASP A 94 34.66 -99.01 REMARK 500 2 ALA A 125 51.15 -91.38 REMARK 500 2 THR A 145 -49.93 -156.78 REMARK 500 2 GLN A 152 -81.05 -146.92 REMARK 500 2 VAL A 153 60.67 60.39 REMARK 500 3 GLN A 4 128.92 -174.10 REMARK 500 3 ASP A 10 97.69 -160.25 REMARK 500 3 ASN A 16 76.98 -175.49 REMARK 500 3 TYR A 28 -165.07 -114.88 REMARK 500 3 ARG A 29 97.21 -55.79 REMARK 500 3 ARG A 41 114.40 -164.51 REMARK 500 3 LYS A 60 52.67 -141.40 REMARK 500 3 HIS A 62 76.74 -68.18 REMARK 500 3 ILE A 78 -70.09 -68.28 REMARK 500 3 THR A 79 40.29 -94.99 REMARK 500 3 GLN A 80 -52.17 -159.48 REMARK 500 3 TRP A 90 78.62 56.51 REMARK 500 3 THR A 92 -61.66 -132.79 REMARK 500 3 ALA A 93 -72.94 -157.25 REMARK 500 3 ASP A 94 45.53 -96.16 REMARK 500 3 LYS A 95 90.29 59.02 REMARK 500 3 GLN A 113 -50.02 -137.64 REMARK 500 3 HIS A 124 -55.32 -150.84 REMARK 500 3 MET A 142 36.53 -94.28 REMARK 500 3 ASN A 143 67.96 -155.69 REMARK 500 4 LEU A 2 125.19 64.33 REMARK 500 4 ILE A 7 78.19 -109.73 REMARK 500 4 ASN A 16 78.35 -170.71 REMARK 500 4 ARG A 29 99.64 -49.52 REMARK 500 4 SER A 36 70.52 -151.14 REMARK 500 4 ALA A 37 -168.70 -78.57 REMARK 500 4 LEU A 59 -172.09 -57.29 REMARK 500 4 LYS A 60 31.22 -158.58 REMARK 500 4 HIS A 62 84.11 -65.43 REMARK 500 4 ASP A 70 46.92 -154.63 REMARK 500 4 THR A 79 38.07 -93.76 REMARK 500 4 GLN A 80 -48.05 -157.62 REMARK 500 4 ASP A 94 90.00 -68.59 REMARK 500 4 GLN A 113 -53.12 -140.00 REMARK 500 4 LYS A 122 67.19 -155.38 REMARK 500 4 MET A 142 35.02 -97.91 REMARK 500 4 ASN A 143 80.87 -161.20 REMARK 500 4 THR A 145 -56.85 -150.37 REMARK 500 4 THR A 149 41.29 -101.12 REMARK 500 4 VAL A 153 43.79 -151.72 REMARK 500 4 GLU A 154 -179.71 -55.44 REMARK 500 5 ASP A 10 97.48 -160.30 REMARK 500 5 ASN A 16 76.35 -176.38 REMARK 500 5 ARG A 29 -154.03 63.56 REMARK 500 5 GLU A 61 108.77 178.86 REMARK 500 5 HIS A 62 98.35 -55.88 REMARK 500 5 THR A 69 -169.45 -169.38 REMARK 500 5 ASP A 70 34.25 -159.65 REMARK 500 5 ILE A 78 -72.69 -76.36 REMARK 500 5 HIS A 83 -72.52 -58.32 REMARK 500 5 ASP A 94 32.93 -98.90 REMARK 500 5 LYS A 95 90.30 50.99 REMARK 500 5 GLN A 113 -52.63 -148.55 REMARK 500 5 ALA A 125 53.64 -90.56 REMARK 500 5 MET A 142 35.66 -94.93 REMARK 500 5 ASN A 143 77.25 -160.23 REMARK 500 5 THR A 149 -82.22 -53.44 REMARK 500 6 ASP A 10 90.22 -160.37 REMARK 500 6 ASN A 16 90.10 53.66 REMARK 500 6 PRO A 17 -78.38 -75.02 REMARK 500 6 TYR A 28 -164.98 -105.44 REMARK 500 6 ARG A 29 96.72 -53.54 REMARK 500 6 THR A 43 -166.94 -114.49 REMARK 500 6 LYS A 60 54.09 -100.89 REMARK 500 6 CYS A 63 -146.50 -143.28 REMARK 500 6 THR A 69 -169.03 -166.83 REMARK 500 6 ASP A 70 32.83 -158.75 REMARK 500 6 ILE A 78 -75.16 -67.90 REMARK 500 6 GLN A 80 -66.16 -95.33 REMARK 500 6 HIS A 83 -72.03 -59.07 REMARK 500 6 TRP A 85 -72.38 -58.08 REMARK 500 6 ASP A 94 39.17 -97.24 REMARK 500 6 LYS A 95 82.40 38.97 REMARK 500 6 GLN A 113 -70.15 -78.22 REMARK 500 6 ALA A 125 53.08 -90.34 REMARK 500 6 MET A 142 32.83 -93.36 REMARK 500 6 ASN A 143 78.17 -160.30 REMARK 500 6 THR A 145 -50.93 -149.32 REMARK 500 7 GLN A 4 147.20 -172.64 REMARK 500 7 ASP A 10 97.41 -160.68 REMARK 500 7 SER A 12 87.54 -157.94 REMARK 500 7 ASN A 16 76.75 -170.19 REMARK 500 7 TYR A 28 -164.72 -104.73 REMARK 500 7 ARG A 29 91.02 -55.94 REMARK 500 7 SER A 36 97.16 -161.60 REMARK 500 7 GLU A 61 112.58 -177.49 REMARK 500 7 ASP A 70 38.24 -92.60 REMARK 500 7 THR A 79 35.81 -96.04 REMARK 500 7 GLN A 80 -53.60 -147.66 REMARK 500 7 LYS A 86 -80.63 -92.33 REMARK 500 7 ARG A 88 -97.52 -44.47 REMARK 500 7 ASP A 94 48.52 -85.80 REMARK 500 7 LYS A 95 63.74 30.35 REMARK 500 7 GLN A 113 -58.27 -144.69 REMARK 500 7 ALA A 125 52.24 -90.26 REMARK 500 7 THR A 145 38.95 -151.56 REMARK 500 7 GLU A 154 -58.00 -155.73 REMARK 500 8 ASP A 10 90.09 -160.50 REMARK 500 8 ASN A 16 77.94 -167.14 REMARK 500 8 ARG A 29 -153.77 63.01 REMARK 500 8 GLU A 61 127.54 174.03 REMARK 500 8 THR A 69 -172.23 -170.01 REMARK 500 8 ASP A 70 32.79 -153.64 REMARK 500 8 THR A 79 41.30 -93.96 REMARK 500 8 GLN A 80 -51.13 -153.18 REMARK 500 8 LYS A 86 -70.28 -48.36 REMARK 500 8 THR A 92 -53.79 -128.05 REMARK 500 8 ALA A 93 -73.29 -153.84 REMARK 500 8 LEU A 107 -70.90 -70.62 REMARK 500 8 GLN A 113 -52.59 -148.02 REMARK 500 8 LYS A 122 32.27 -79.26 REMARK 500 8 ALA A 125 -116.53 -67.51 REMARK 500 8 MET A 142 35.47 -95.51 REMARK 500 8 ASN A 143 71.22 -158.10 REMARK 500 8 THR A 145 56.19 -148.98 REMARK 500 8 THR A 149 -75.91 -89.19 REMARK 500 8 TYR A 151 107.66 -54.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 1RCH A 1 155 UNP P0A7Y4 RNH_ECOLI 1 155 SEQRES 1 A 155 MET LEU LYS GLN VAL GLU ILE PHE THR ASP GLY SER CYS SEQRES 2 A 155 LEU GLY ASN PRO GLY PRO GLY GLY TYR GLY ALA ILE LEU SEQRES 3 A 155 ARG TYR ARG GLY ARG GLU LYS THR PHE SER ALA GLY TYR SEQRES 4 A 155 THR ARG THR THR ASN ASN ARG MET GLU LEU MET ALA ALA SEQRES 5 A 155 ILE VAL ALA LEU GLU ALA LEU LYS GLU HIS CYS GLU VAL SEQRES 6 A 155 ILE LEU SER THR ASP SER GLN TYR VAL ARG GLN GLY ILE SEQRES 7 A 155 THR GLN TRP ILE HIS ASN TRP LYS LYS ARG GLY TRP LYS SEQRES 8 A 155 THR ALA ASP LYS LYS PRO VAL LYS ASN VAL ASP LEU TRP SEQRES 9 A 155 GLN ARG LEU ASP ALA ALA LEU GLY GLN HIS GLN ILE LYS SEQRES 10 A 155 TRP GLU TRP VAL LYS GLY HIS ALA GLY HIS PRO GLU ASN SEQRES 11 A 155 GLU ARG CYS ASP GLU LEU ALA ARG ALA ALA ALA MET ASN SEQRES 12 A 155 PRO THR LEU GLU ASP THR GLY TYR GLN VAL GLU VAL HELIX 1 1 ASN A 44 ALA A 58 1 15 HELIX 2 2 GLN A 72 ILE A 78 1 7 HELIX 3 3 TRP A 81 ARG A 88 1 8 HELIX 4 4 VAL A 101 LEU A 111 1 11 HELIX 5 5 PRO A 128 ALA A 141 1 14 SHEET 1 A 5 ARG A 31 SER A 36 0 SHEET 2 A 5 GLY A 21 TYR A 28 -1 N TYR A 28 O ARG A 31 SHEET 3 A 5 GLN A 4 CYS A 13 -1 N SER A 12 O GLY A 21 SHEET 4 A 5 GLU A 64 SER A 68 1 N ILE A 66 O VAL A 5 SHEET 5 A 5 HIS A 114 LYS A 122 1 N LYS A 117 O VAL A 65 CISPEP 1 ASN A 16 PRO A 17 1 -4.09 CISPEP 2 ASN A 16 PRO A 17 2 -2.11 CISPEP 3 ASN A 16 PRO A 17 3 -6.30 CISPEP 4 ASN A 16 PRO A 17 4 5.43 CISPEP 5 ASN A 16 PRO A 17 5 -2.26 CISPEP 6 ASN A 16 PRO A 17 6 -5.90 CISPEP 7 ASN A 16 PRO A 17 7 -0.43 CISPEP 8 ASN A 16 PRO A 17 8 -0.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 228 0 0 5 5 0 0 6 0 0 0 12 END