HEADER CHAPERONE/PROTEIN BINDING 16-OCT-03 1R6Q TITLE CLPNS WITH FRAGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL CLPA (RESIDUES 1-143); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SG22176; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSK39; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: DH5(ALPHA); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBAD33-CLPS KEYWDS CLPA, AAA+, N-TERMINAL DOMAIN, CLPS, CRYSTAL, BINDING MECHANISM, KEYWDS 2 CHAPERONE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.XIA,M.R.MAURIZI,F.GUO,S.K.SINGH,L.ESSER REVDAT 3 13-JUL-11 1R6Q 1 VERSN REVDAT 2 24-FEB-09 1R6Q 1 VERSN REVDAT 1 15-FEB-05 1R6Q 0 JRNL AUTH D.XIA,L.ESSER,S.K.SINGH,F.GUO,M.R.MAURIZI JRNL TITL CRYSTALLOGRAPHIC INVESTIGATION OF PEPTIDE BINDING SITES IN JRNL TITL 2 THE N-DOMAIN OF THE CLPA CHAPERONE. JRNL REF J.STRUCT.BIOL. V. 146 166 2004 JRNL REFN ISSN 1047-8477 JRNL PMID 15037248 JRNL DOI 10.1016/J.JSB.2003.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3910 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5303 ; 1.065 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 2.312 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;14.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2898 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1801 ; 0.182 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 299 ; 0.146 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.061 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.169 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.177 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2359 ; 1.333 ; 0.800 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3806 ; 3.436 ; 3.800 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 6.016 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 8.329 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9220 26.4940 17.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.2807 REMARK 3 T33: 0.0726 T12: -0.0163 REMARK 3 T13: 0.0256 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 5.4356 L22: 4.1619 REMARK 3 L33: 4.3624 L12: 0.1374 REMARK 3 L13: 1.4809 L23: 1.4183 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.5592 S13: 0.0603 REMARK 3 S21: 0.4270 S22: -0.1027 S23: -0.1940 REMARK 3 S31: 0.1316 S32: -0.3561 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3286 23.9551 6.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1735 REMARK 3 T33: 0.1123 T12: 0.0346 REMARK 3 T13: 0.0298 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.9235 L22: 3.6429 REMARK 3 L33: 5.0781 L12: 0.1998 REMARK 3 L13: 1.4048 L23: 0.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.0279 S13: -0.0817 REMARK 3 S21: -0.0288 S22: -0.1159 S23: -0.3592 REMARK 3 S31: 0.1227 S32: -0.1578 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1540 59.3037 14.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.3096 REMARK 3 T33: 0.0939 T12: 0.0812 REMARK 3 T13: 0.0042 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 5.3389 L22: 2.2882 REMARK 3 L33: 2.2003 L12: 0.3481 REMARK 3 L13: 0.0525 L23: 0.9386 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: 0.8126 S13: 0.0138 REMARK 3 S21: -0.3395 S22: -0.0647 S23: -0.1571 REMARK 3 S31: -0.0796 S32: 0.1571 S33: -0.0968 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9806 59.0556 25.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1037 REMARK 3 T33: 0.0189 T12: 0.0276 REMARK 3 T13: -0.0262 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 6.5365 L22: 5.4436 REMARK 3 L33: 2.8280 L12: -1.4601 REMARK 3 L13: -0.3587 L23: 0.7690 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.1064 S13: -0.1086 REMARK 3 S21: 0.1513 S22: -0.1358 S23: -0.2054 REMARK 3 S31: 0.0910 S32: 0.0530 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 106 REMARK 3 ORIGIN FOR THE GROUP (A): 73.8776 35.1516 14.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.2427 REMARK 3 T33: 0.2151 T12: 0.0624 REMARK 3 T13: -0.0285 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 5.6907 L22: 6.2391 REMARK 3 L33: 2.3088 L12: 3.6296 REMARK 3 L13: -0.1743 L23: 0.2224 REMARK 3 S TENSOR REMARK 3 S11: 0.2762 S12: -0.2491 S13: -0.4918 REMARK 3 S21: 0.2019 S22: -0.1017 S23: -0.4620 REMARK 3 S31: -0.0364 S32: 0.1989 S33: -0.1745 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 106 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1861 46.1968 25.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1926 REMARK 3 T33: 0.1209 T12: -0.0399 REMARK 3 T13: -0.0337 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.2112 L22: 3.5169 REMARK 3 L33: 1.7451 L12: -2.8573 REMARK 3 L13: 0.6998 L23: -0.5837 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.0299 S13: 0.3490 REMARK 3 S21: -0.0516 S22: 0.0925 S23: -0.2262 REMARK 3 S31: -0.1035 S32: -0.0017 S33: 0.0103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R6Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39975 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1MBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO REMARK 300 HETERODIMERIC COMPLEXES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 143 REMARK 465 ARG B 143 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 ASN C 5 REMARK 465 ASP C 6 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 LYS C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 ASN D 5 REMARK 465 LEU D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 GLU D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ASP D 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 41 Y1 YBT B 144 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 25 SD MET B 25 CE -0.340 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 73 92.79 -68.21 REMARK 500 GLN C 12 70.27 -178.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU B 102 23.9 L L OUTSIDE RANGE REMARK 500 GLN B 116 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MBU RELATED DB: PDB REMARK 900 RELATED ID: 1R6O RELATED DB: PDB REMARK 900 RELATED ID: 1R6C RELATED DB: PDB DBREF 1R6Q A 1 143 UNP P0ABH9 CLPA_ECOLI 1 143 DBREF 1R6Q B 1 143 UNP P0ABH9 CLPA_ECOLI 1 143 DBREF 1R6Q C 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 DBREF 1R6Q D 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 SEQRES 1 A 143 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 A 143 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 A 143 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 A 143 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 A 143 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 A 143 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 A 143 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 A 143 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 A 143 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 A 143 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 A 143 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR ARG SEQRES 1 B 143 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 B 143 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 B 143 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 B 143 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 B 143 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 B 143 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 B 143 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 B 143 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 B 143 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 B 143 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 B 143 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR ARG SEQRES 1 C 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 C 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 C 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 C 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 C 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 C 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 C 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 C 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 C 106 LYS ALA SEQRES 1 D 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 D 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 D 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 D 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 D 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 D 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 D 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 D 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 D 106 LYS ALA HET Y1 C 107 1 HET Y1 D 107 1 HET YBT B 144 15 HET YBT A 144 15 HET YBT B 145 15 HET YBT A 145 15 HET GOL A 146 6 HET GOL B 146 6 HETNAM Y1 YTTRIUM ION HETNAM YBT BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE HETNAM 2 YBT YTTRIUM HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 Y1 2(Y 2+) FORMUL 7 YBT 4(C8 H19 N O5 Y) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *209(H2 O) HELIX 1 1 ASN A 3 HIS A 20 1 18 HELIX 2 2 THR A 26 LEU A 35 1 10 HELIX 3 3 ASN A 37 CYS A 47 1 11 HELIX 4 4 ASP A 50 THR A 66 1 17 HELIX 5 5 THR A 81 SER A 97 1 17 HELIX 6 6 THR A 104 PHE A 113 1 10 HELIX 7 7 SER A 118 HIS A 127 1 10 HELIX 8 8 SER A 130 GLY A 141 1 12 HELIX 9 9 ASN B 3 HIS B 20 1 18 HELIX 10 10 THR B 26 LEU B 35 1 10 HELIX 11 11 ASN B 37 CYS B 47 1 11 HELIX 12 12 ASP B 50 THR B 66 1 17 HELIX 13 13 THR B 81 SER B 98 1 18 HELIX 14 14 THR B 104 PHE B 113 1 10 HELIX 15 15 SER B 118 HIS B 127 1 10 HELIX 16 16 SER B 130 GLY B 141 1 12 HELIX 17 17 PRO C 39 SER C 52 1 14 HELIX 18 18 ASP C 54 GLY C 69 1 16 HELIX 19 19 ALA C 78 ASN C 95 1 18 HELIX 20 20 PRO D 39 SER D 52 1 14 HELIX 21 21 ASP D 54 GLY D 69 1 16 HELIX 22 22 ALA D 78 ASN D 95 1 18 SHEET 1 A 2 PHE A 24 MET A 25 0 SHEET 2 A 2 GLN A 79 PRO A 80 1 O GLN A 79 N MET A 25 SHEET 1 B 2 PHE B 24 MET B 25 0 SHEET 2 B 2 GLN B 79 PRO B 80 1 O GLN B 79 N MET B 25 SHEET 1 C 3 LYS C 70 THR C 77 0 SHEET 2 C 3 MET C 27 VAL C 33 -1 N TYR C 28 O PHE C 76 SHEET 3 C 3 LEU C 100 LYS C 105 -1 O THR C 102 N ILE C 31 SHEET 1 D 3 LYS D 70 THR D 77 0 SHEET 2 D 3 MET D 27 VAL D 33 -1 N VAL D 30 O CYS D 73 SHEET 3 D 3 LEU D 100 LYS D 105 -1 O THR D 102 N ILE D 31 SITE 1 AC1 3 YBT A 145 ASP C 9 ASP C 11 SITE 1 AC2 2 ASP D 9 ASP D 11 SITE 1 AC3 7 ASN B 3 GLN B 4 GLU B 5 GLU B 102 SITE 2 AC3 7 HOH B 175 HOH B 209 GLU C 41 SITE 1 AC4 4 ARG A 41 GLU A 42 GLU A 45 HOH A 183 SITE 1 AC5 4 ARG B 41 GLU B 42 GLU B 45 HOH B 167 SITE 1 AC6 6 GLU A 7 HOH A 198 ASP C 11 Y1 C 107 SITE 2 AC6 6 ASP D 54 GLU D 56 SITE 1 AC7 3 GLU A 117 GLU C 82 HOH C 117 SITE 1 AC8 4 GLU B 117 HOH B 158 ALA D 78 GLU D 82 CRYST1 87.913 87.913 209.420 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011375 0.006567 0.000000 0.00000 SCALE2 0.000000 0.013135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004775 0.00000 MASTER 520 0 8 22 10 0 10 6 0 0 0 40 END