HEADER TRANSFERASE 15-OCT-03 1R6L TITLE CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PH; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE PH, TRNA NUCLEOTIDYLTRANSFERASE; COMPND 5 EC: 2.7.7.56; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: RPH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS BETA-ALPHA-BETA-ALPHA FOLD, HEXAMER, PHOSPHATE BOUND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.CHOI,E.Y.PARK,J.H.KIM,S.K.CHANG,Y.CHO REVDAT 3 13-JUL-11 1R6L 1 VERSN REVDAT 2 24-FEB-09 1R6L 1 VERSN REVDAT 1 17-FEB-04 1R6L 0 JRNL AUTH J.M.CHOI,E.Y.PARK,J.H.KIM,S.K.CHANG,Y.CHO JRNL TITL PROBING THE FUNCTIONAL IMPORTANCE OF THE HEXAMERIC RING JRNL TITL 2 STRUCTURE OF RNASE PH JRNL REF J.BIOL.CHEM. V. 279 755 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14573594 JRNL DOI 10.1074/JBC.M309628200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1259160.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1262 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3272 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 205 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -3.25000 REMARK 3 B12 (A**2) : 2.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 72.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SO4.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NHE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : SO4.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NHE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9792, 0.9716 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CHES, SODIUM REMARK 280 CHLORIDE, PH 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.56950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.08307 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.61367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.56950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.08307 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.61367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.56950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.08307 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.61367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.56950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.08307 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.61367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.56950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.08307 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.61367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.56950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.08307 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.61367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.16613 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.22733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.16613 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 77.22733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.16613 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 77.22733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.16613 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.22733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.16613 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 77.22733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.16613 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 77.22733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS; (-Y, X-Y, Z ), (- REMARK 300 X+Y, -X, Z), (Y, X, -Z), (X-Y, -Y , -Z) AND (-X, -X+Y, -Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -445.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 111.13900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 55.56950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.24920 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 55.56950 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -32.08307 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -38.61367 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 64.16613 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -38.61367 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 111.13900 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 64.16613 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -38.61367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 54 REMARK 465 GLN A 55 REMARK 465 GLY A 56 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 49 -93.21 -56.45 REMARK 500 LEU A 52 -22.62 -152.72 REMARK 500 LYS A 83 140.39 174.94 REMARK 500 ASP A 123 47.06 -156.01 REMARK 500 GLN A 158 146.58 -171.36 REMARK 500 ASP A 175 79.98 62.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 23 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2969 DISTANCE = 5.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 2854 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R6M RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHATE DBREF 1R6L A 1 239 UNP P50597 RNPH_PSEAE 1 239 SEQADV 1R6L MSE A 1 UNP P50597 MET 1 MODIFIED RESIDUE SEQADV 1R6L MSE A 66 UNP P50597 MET 66 MODIFIED RESIDUE SEQADV 1R6L MSE A 159 UNP P50597 MET 159 MODIFIED RESIDUE SEQADV 1R6L MSE A 192 UNP P50597 MET 192 MODIFIED RESIDUE SEQADV 1R6L MSE A 218 UNP P50597 MET 218 MODIFIED RESIDUE SEQADV 1R6L MSE A 226 UNP P50597 MET 226 MODIFIED RESIDUE SEQRES 1 A 239 MSE ASN ARG PRO SER GLY ARG ALA ALA ASP GLN LEU ARG SEQRES 2 A 239 PRO ILE ARG ILE THR ARG HIS TYR THR LYS HIS ALA GLU SEQRES 3 A 239 GLY SER VAL LEU VAL GLU PHE GLY ASP THR LYS VAL ILE SEQRES 4 A 239 CYS THR VAL SER ALA GLU SER GLY VAL PRO ARG PHE LEU SEQRES 5 A 239 LYS GLY GLN GLY GLN GLY TRP LEU THR ALA GLU TYR GLY SEQRES 6 A 239 MSE LEU PRO ARG SER THR GLY GLU ARG ASN GLN ARG GLU SEQRES 7 A 239 ALA SER ARG GLY LYS GLN GLY GLY ARG THR LEU GLU ILE SEQRES 8 A 239 GLN ARG LEU ILE GLY ARG SER LEU ARG ALA ALA LEU ASP SEQRES 9 A 239 LEU SER LYS LEU GLY GLU ASN THR LEU TYR ILE ASP CYS SEQRES 10 A 239 ASP VAL ILE GLN ALA ASP GLY GLY THR ARG THR ALA SER SEQRES 11 A 239 ILE THR GLY ALA THR VAL ALA LEU ILE ASP ALA LEU ALA SEQRES 12 A 239 VAL LEU LYS LYS ARG GLY ALA LEU LYS GLY ASN PRO LEU SEQRES 13 A 239 LYS GLN MSE VAL ALA ALA VAL SER VAL GLY ILE TYR GLN SEQRES 14 A 239 GLY VAL PRO VAL LEU ASP LEU ASP TYR LEU GLU ASP SER SEQRES 15 A 239 ALA ALA GLU THR ASP LEU ASN VAL VAL MSE THR ASP ALA SEQRES 16 A 239 GLY GLY PHE ILE GLU VAL GLN GLY THR ALA GLU GLY ALA SEQRES 17 A 239 PRO PHE ARG PRO ALA GLU LEU ASN ALA MSE LEU GLU LEU SEQRES 18 A 239 ALA GLN GLN GLY MSE GLN GLU LEU PHE GLU LEU GLN ARG SEQRES 19 A 239 ALA ALA LEU ALA GLU MODRES 1R6L MSE A 1 MET SELENOMETHIONINE MODRES 1R6L MSE A 66 MET SELENOMETHIONINE MODRES 1R6L MSE A 159 MET SELENOMETHIONINE MODRES 1R6L MSE A 192 MET SELENOMETHIONINE MODRES 1R6L MSE A 218 MET SELENOMETHIONINE MODRES 1R6L MSE A 226 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 66 8 HET MSE A 159 8 HET MSE A 192 8 HET MSE A 218 8 HET MSE A 226 8 HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET NHE A2854 13 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 NHE C8 H17 N O3 S FORMUL 9 HOH *206(H2 O) HELIX 1 1 ARG A 77 GLY A 82 1 6 HELIX 2 2 GLY A 85 ALA A 102 1 18 HELIX 3 3 LEU A 103 LEU A 103 5 1 HELIX 4 4 ASP A 104 LEU A 108 5 5 HELIX 5 5 GLY A 125 ARG A 148 1 24 HELIX 6 6 ASP A 177 ALA A 184 1 8 HELIX 7 7 ARG A 211 ALA A 238 1 28 SHEET 1 A 5 ILE A 15 THR A 18 0 SHEET 2 A 5 GLY A 27 PHE A 33 -1 O GLU A 32 N ARG A 16 SHEET 3 A 5 THR A 36 SER A 46 -1 O CYS A 40 N VAL A 29 SHEET 4 A 5 ASN A 111 GLN A 121 -1 O GLN A 121 N LYS A 37 SHEET 5 A 5 TRP A 59 MSE A 66 1 N TRP A 59 O LEU A 113 SHEET 1 B 4 VAL A 171 LEU A 174 0 SHEET 2 B 4 VAL A 160 TYR A 168 -1 N GLY A 166 O VAL A 173 SHEET 3 B 4 THR A 186 THR A 193 -1 O LEU A 188 N VAL A 165 SHEET 4 B 4 PHE A 198 ALA A 205 -1 O ILE A 199 N VAL A 191 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C GLY A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N LEU A 67 1555 1555 1.33 LINK C GLN A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N VAL A 160 1555 1555 1.33 LINK C VAL A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N THR A 193 1555 1555 1.33 LINK C ALA A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N LEU A 219 1555 1555 1.33 LINK C GLY A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N GLN A 227 1555 1555 1.33 SITE 1 AC1 2 ARG A 81 LYS A 83 SITE 1 AC2 4 LYS A 37 NHE A2854 HOH A2888 HOH A2959 SITE 1 AC3 6 ARG A 87 GLY A 125 THR A 126 ARG A 127 SITE 2 AC3 6 HOH A2966 HOH A3057 SITE 1 AC4 6 ARG A 81 GLY A 85 GLY A 86 HOH A2904 SITE 2 AC4 6 HOH A2993 HOH A2997 SITE 1 AC5 6 SER A 5 ARG A 13 PRO A 14 GLY A 34 SITE 2 AC5 6 HOH A2859 HOH A2871 SITE 1 AC6 5 LYS A 23 ASP A 35 HOH A2918 HOH A2972 SITE 2 AC6 5 HOH A3051 SITE 1 AC7 7 THR A 18 TYR A 21 SO4 A1002 HOH A2860 SITE 2 AC7 7 HOH A2915 HOH A2927 HOH A2975 CRYST1 111.139 111.139 115.841 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008998 0.005195 0.000000 0.00000 SCALE2 0.000000 0.010390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008633 0.00000 MASTER 392 0 13 7 9 0 12 6 0 0 0 19 END