HEADER VIRAL PROTEIN, TRANSFERASE 06-OCT-03 1R4G TITLE SOLUTION STRUCTURE OF THE SENDAI VIRUS PROTEIN X C-SUBDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-SUBDOMAIN (RESIDUES 516-568); COMPND 5 SYNONYM: NUCLEOCAPSID PHOSPHOPROTEIN, PROTEIN X; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SENDAI VIRUS (STRAIN HARRIS); SOURCE 3 ORGANISM_TAXID: 11196; SOURCE 4 STRAIN: HARRIS; SOURCE 5 GENE: P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS THREE HELIX-BUNDLE, VIRAL PROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.BLANCHARD,N.TARBOURIECH,M.BLACKLEDGE,P.TIMMINS, AUTHOR 2 W.P.BURMEISTER,R.W.RUIGROK,D.MARION REVDAT 2 24-FEB-09 1R4G 1 VERSN REVDAT 1 09-MAR-04 1R4G 0 JRNL AUTH L.BLANCHARD,N.TARBOURIECH,M.BLACKLEDGE,P.TIMMINS, JRNL AUTH 2 W.P.BURMEISTER,R.W.RUIGROK,D.MARION JRNL TITL STRUCTURE AND DYNAMICS OF THE NUCLEOCAPSID-BINDING JRNL TITL 2 DOMAIN OF THE SENDAI VIRUS PHOSPHOPROTEIN IN JRNL TITL 3 SOLUTION JRNL REF VIROLOGY V. 319 201 2004 JRNL REFN ISSN 0042-6822 JRNL PMID 14980481 JRNL DOI 10.1016/J.VIROL.2003.10.029 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MARION,N.TARBOURIECH,R.W.RUIGROK,W.P.BURMEISTER, REMARK 1 AUTH 2 L.BLANCHARD REMARK 1 TITL ASSIGNMENT OF THE 1H, 15N AND 13C RESONANCES OF REMARK 1 TITL 2 THE NUCLEOCAPSID-BINDING DOMAIN OF THE SENDAI REMARK 1 TITL 3 VIRUS PHOSPHOPROTEIN REMARK 1 REF J.BIOMOL.NMR V. 21 75 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1011990021282 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SCULPTOR REMARK 3 AUTHORS : HUS & BLACKLEDGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R4G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020424. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.5M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2-1.5MM 15N/13C PROTEIN X, REMARK 210 50MM POTASSIUM PHOSPHATE REMARK 210 BUFFER, 0.5M NACL, 10MM DTT, REMARK 210 ANTIPROTEASE COCKTAIL; 1MM REMARK 210 15N/13C PROTEIN X, 5% C12/E6/ REMARK 210 HEXANOL, 50MM POTASSIUM REMARK 210 PHOSPHATE BUFFER, 0.5M NACL, REMARK 210 10MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 3D HNCO REMARK 210 TYPE EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER 2.98 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SAMPLE 2 WAS USED TO MEASURE THE THREE DIFFERENT TYPES REMARK 210 OF RESIDUAL DIPOLAR COUPLINGS USED FOR STRUCTURE REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 VAL A 552 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 528 -48.58 -162.28 REMARK 500 1 SER A 532 -152.80 -101.42 REMARK 500 1 LYS A 545 12.96 -66.34 REMARK 500 1 CYS A 546 177.46 -59.46 REMARK 500 1 LYS A 547 -56.63 -172.16 REMARK 500 1 THR A 548 -112.56 -99.47 REMARK 500 1 ASP A 549 -55.02 -156.93 REMARK 500 2 SER A 532 -154.84 -95.32 REMARK 500 2 LYS A 545 7.70 -64.15 REMARK 500 2 CYS A 546 176.27 -57.86 REMARK 500 2 LYS A 547 -63.91 -169.63 REMARK 500 2 THR A 548 -134.81 -93.03 REMARK 500 2 ASP A 549 -51.17 -137.61 REMARK 500 2 SER A 565 51.57 76.85 REMARK 500 2 THR A 567 76.35 56.72 REMARK 500 3 LEU A 531 -174.28 -65.86 REMARK 500 3 SER A 532 -150.60 -97.77 REMARK 500 3 LYS A 545 6.02 -65.98 REMARK 500 3 CYS A 546 175.37 -58.37 REMARK 500 3 LYS A 547 -64.15 -172.72 REMARK 500 3 THR A 548 -119.22 -94.79 REMARK 500 3 ASP A 549 -48.39 -151.67 REMARK 500 3 THR A 567 -65.60 73.89 REMARK 500 4 THR A 518 170.08 146.99 REMARK 500 4 SER A 528 -41.76 -140.88 REMARK 500 4 SER A 532 -160.21 -60.60 REMARK 500 4 LYS A 545 14.06 -67.85 REMARK 500 4 CYS A 546 178.38 -58.80 REMARK 500 4 LYS A 547 -62.39 -167.46 REMARK 500 4 THR A 548 -142.69 -107.79 REMARK 500 5 SER A 528 -49.67 -163.88 REMARK 500 5 PRO A 530 -108.58 -70.33 REMARK 500 5 LEU A 531 179.50 89.99 REMARK 500 5 SER A 532 -150.41 -99.76 REMARK 500 5 LYS A 545 10.76 -68.20 REMARK 500 5 CYS A 546 177.42 -56.90 REMARK 500 5 LYS A 547 -63.20 -169.08 REMARK 500 5 THR A 548 -108.53 -102.96 REMARK 500 5 ASP A 549 -41.52 -163.08 REMARK 500 5 SER A 565 48.01 71.57 REMARK 500 6 THR A 518 -163.94 178.37 REMARK 500 6 LEU A 531 -169.95 -76.39 REMARK 500 6 SER A 532 -156.10 -96.55 REMARK 500 6 THR A 548 -136.15 -82.67 REMARK 500 6 ASP A 549 -59.94 -139.45 REMARK 500 6 THR A 567 62.96 -112.30 REMARK 500 7 SER A 528 -103.32 -66.95 REMARK 500 7 SER A 532 -142.56 -103.08 REMARK 500 7 LYS A 545 9.65 -65.29 REMARK 500 7 THR A 548 -149.36 -99.66 REMARK 500 7 GLU A 564 -41.27 -27.30 REMARK 500 7 THR A 567 -53.52 75.60 REMARK 500 8 SER A 528 -48.69 -155.75 REMARK 500 8 LEU A 531 -162.78 -61.02 REMARK 500 8 SER A 532 -163.53 -102.15 REMARK 500 8 LYS A 545 13.32 -62.59 REMARK 500 8 CYS A 546 82.45 -66.75 REMARK 500 8 THR A 567 72.60 43.32 REMARK 500 9 THR A 518 176.76 163.96 REMARK 500 9 PRO A 530 20.80 -66.27 REMARK 500 9 LEU A 531 -172.72 -58.17 REMARK 500 9 SER A 532 -154.09 -106.67 REMARK 500 9 LYS A 547 -45.67 -168.35 REMARK 500 9 THR A 548 -131.82 -92.68 REMARK 500 9 ASP A 549 -61.94 -142.13 REMARK 500 10 THR A 518 -35.99 -9.04 REMARK 500 10 PRO A 530 -96.53 -66.33 REMARK 500 10 LEU A 531 155.94 70.00 REMARK 500 10 SER A 532 -147.87 -119.46 REMARK 500 10 LYS A 545 16.04 -69.11 REMARK 500 10 LYS A 547 -63.92 -164.80 REMARK 500 10 THR A 548 -142.03 -105.00 REMARK 500 11 SER A 528 -101.86 -67.73 REMARK 500 11 SER A 529 -61.58 -91.48 REMARK 500 11 LEU A 531 161.01 108.35 REMARK 500 11 SER A 532 -130.63 -117.66 REMARK 500 11 LYS A 545 10.99 -67.90 REMARK 500 11 CYS A 546 173.36 -55.24 REMARK 500 11 LYS A 547 -62.40 -165.71 REMARK 500 11 THR A 548 -116.31 -113.04 REMARK 500 11 ASP A 549 -58.27 -132.78 REMARK 500 12 LEU A 531 -168.99 -67.69 REMARK 500 12 LYS A 545 13.91 -66.72 REMARK 500 12 CYS A 546 165.19 -48.36 REMARK 500 12 LYS A 547 -69.29 -151.83 REMARK 500 12 SER A 565 45.82 72.49 REMARK 500 13 SER A 532 -150.95 -100.35 REMARK 500 13 CYS A 546 171.80 -54.41 REMARK 500 13 LYS A 547 -72.31 -154.53 REMARK 500 13 THR A 548 -91.77 -101.12 REMARK 500 13 ASP A 549 -46.31 -173.38 REMARK 500 14 SER A 532 -155.96 -64.52 REMARK 500 14 LYS A 545 8.82 -66.27 REMARK 500 14 CYS A 546 176.45 -59.47 REMARK 500 14 LYS A 547 -60.43 -169.15 REMARK 500 14 THR A 548 -131.06 -103.97 REMARK 500 14 ASP A 549 -48.26 -135.04 REMARK 500 14 GLU A 564 -8.87 -54.41 REMARK 500 14 THR A 567 -62.22 77.12 REMARK 500 15 THR A 518 -169.13 169.64 REMARK 500 15 SER A 528 -42.72 -159.89 REMARK 500 15 LEU A 531 -174.84 -68.83 REMARK 500 15 SER A 532 -158.71 -102.82 REMARK 500 15 SER A 565 -64.53 -98.71 REMARK 500 16 LEU A 531 -166.32 -76.16 REMARK 500 16 SER A 532 -151.21 -106.34 REMARK 500 16 LYS A 545 7.14 -66.55 REMARK 500 16 CYS A 546 172.69 -54.29 REMARK 500 16 LYS A 547 -57.91 -161.11 REMARK 500 16 THR A 548 -103.12 -104.53 REMARK 500 16 ASP A 549 -49.22 -162.76 REMARK 500 16 GLU A 564 -39.18 -28.34 REMARK 500 17 THR A 518 -134.00 -68.34 REMARK 500 17 SER A 532 -154.86 -62.02 REMARK 500 17 LYS A 545 8.25 -60.93 REMARK 500 17 CYS A 546 158.02 -45.06 REMARK 500 17 LYS A 547 -70.72 -165.68 REMARK 500 17 ASP A 549 -43.80 69.23 REMARK 500 17 ILE A 563 -70.38 -67.27 REMARK 500 17 GLU A 564 -41.07 -29.52 REMARK 500 17 THR A 567 72.03 -110.65 REMARK 500 18 THR A 518 -139.70 -158.75 REMARK 500 18 LYS A 545 21.40 -73.96 REMARK 500 18 THR A 548 -149.77 -95.84 REMARK 500 18 THR A 567 -65.68 77.71 REMARK 500 19 PRO A 530 -97.74 -67.89 REMARK 500 19 LEU A 531 145.99 67.35 REMARK 500 19 SER A 532 -137.30 -108.65 REMARK 500 19 LYS A 547 -58.42 -167.21 REMARK 500 19 THR A 548 -122.56 -94.57 REMARK 500 19 ASP A 549 -50.63 -150.73 REMARK 500 20 THR A 548 -130.08 -80.49 REMARK 500 20 ASP A 549 -58.45 -152.19 REMARK 500 20 SER A 565 44.99 73.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 539 0.08 SIDE_CHAIN REMARK 500 2 TYR A 539 0.09 SIDE_CHAIN REMARK 500 4 TYR A 539 0.08 SIDE_CHAIN REMARK 500 5 TYR A 539 0.10 SIDE_CHAIN REMARK 500 6 TYR A 539 0.07 SIDE_CHAIN REMARK 500 8 TYR A 539 0.10 SIDE_CHAIN REMARK 500 9 TYR A 539 0.09 SIDE_CHAIN REMARK 500 10 TYR A 539 0.08 SIDE_CHAIN REMARK 500 11 TYR A 539 0.11 SIDE_CHAIN REMARK 500 12 TYR A 539 0.14 SIDE_CHAIN REMARK 500 13 TYR A 539 0.07 SIDE_CHAIN REMARK 500 14 TYR A 539 0.14 SIDE_CHAIN REMARK 500 15 TYR A 539 0.11 SIDE_CHAIN REMARK 500 18 TYR A 539 0.10 SIDE_CHAIN REMARK 500 19 TYR A 539 0.12 SIDE_CHAIN REMARK 500 20 TYR A 539 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4999 RELATED DB: BMRB REMARK 900 1H, 15N AND 13C RESONANCES OF PROTEIN X DBREF 1R4G A 516 568 UNP P04859 PHOSP_SENDH 516 568 SEQRES 1 A 53 LYS PRO THR MET HIS SER LEU ARG LEU VAL ILE GLU SER SEQRES 2 A 53 SER PRO LEU SER ARG ALA GLU LYS ALA ALA TYR VAL LYS SEQRES 3 A 53 SER LEU SER LYS CYS LYS THR ASP GLN GLU VAL LYS ALA SEQRES 4 A 53 VAL MET GLU LEU VAL GLU GLU ASP ILE GLU SER LEU THR SEQRES 5 A 53 ASN HELIX 1 1 THR A 518 GLU A 527 1 10 HELIX 2 2 ARG A 533 LYS A 545 1 13 HELIX 3 3 ASP A 549 THR A 567 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 270 0 0 3 0 0 0 6 0 0 0 5 END