HEADER TRANSPORT PROTEIN 03-SEP-03 1QWV TITLE SOLUTION STRUCTURE OF ANTHERAEA POLYPHEMUS PHEROMONE TITLE 2 BINDING PROTEIN (APOLPBP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PBP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANTHERAEA POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: POLYPHEMUS MOTH; SOURCE 4 ORGANISM_TAXID: 7120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XA-90; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHN1+ KEYWDS PHEROMONE BINDING PROTEIN, ANTHERAEA POLYPHEMUS, PBP, KEYWDS 2 APOLPBP, HEXAHELICAL FOLD, PBP FOLD, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MOHANTY,S.ZUBKOV,A.M.GRONENBORN REVDAT 2 24-FEB-09 1QWV 1 VERSN REVDAT 1 23-MAR-04 1QWV 0 JRNL AUTH S.MOHANTY,S.ZUBKOV,A.M.GRONENBORN JRNL TITL THE SOLUTION NMR STRUCTURE OF ANTHERAEA POLYPHEMUS JRNL TITL 2 PBP PROVIDES NEW INSIGHT INTO PHEROMONE JRNL TITL 3 RECOGNITION BY PHEROMONE-BINDING PROTEINS JRNL REF J.MOL.BIOL. V. 337 443 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15003458 JRNL DOI 10.1016/J.JMB.2004.01.009 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE J.P., HABECK M., RIEPING W., NILGES M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2501 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 243 DIHEDRAL ANGLE RESTRAINTS, 120 DISTANCE REMARK 3 RESTRAINTS FROM HYDROGEN BONDS REMARK 4 REMARK 4 1QWV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.33 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM APOLPBP U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER; 1MM EDTA; REMARK 210 0.1% NAN3; 95% H2O; 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.0.4, REMARK 210 CYANA 1.0.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 SIMULATED ANNEALING, THIN REMARK 210 LAYER WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: MIXING TIME 110MS FOR 13C SEPARATED NOESY, 120MS FOR REMARK 210 15N SEPARATED NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 12 -78.01 -51.41 REMARK 500 1 ASP A 40 61.31 66.36 REMARK 500 1 ASP A 60 119.14 -176.28 REMARK 500 1 VAL A 61 31.18 -175.62 REMARK 500 1 PRO A 64 -143.77 -98.99 REMARK 500 1 PRO A 103 35.52 -73.37 REMARK 500 1 ASN A 126 -85.03 49.47 REMARK 500 1 ASP A 132 117.58 67.73 REMARK 500 2 PHE A 12 -73.02 -47.45 REMARK 500 2 TYR A 34 11.08 -66.95 REMARK 500 2 ASP A 40 70.92 59.41 REMARK 500 2 ASP A 60 123.21 -178.97 REMARK 500 2 VAL A 61 32.33 -177.42 REMARK 500 2 PRO A 64 -139.40 -104.62 REMARK 500 2 PRO A 103 33.34 -66.92 REMARK 500 2 LYS A 107 -77.26 -31.29 REMARK 500 3 PHE A 12 -86.50 -57.10 REMARK 500 3 TYR A 34 12.15 -68.51 REMARK 500 3 ASP A 39 12.10 -62.51 REMARK 500 3 ASP A 60 121.83 -176.76 REMARK 500 3 VAL A 61 50.84 -173.29 REMARK 500 3 PRO A 64 -139.52 -98.34 REMARK 500 3 PRO A 103 72.28 -66.55 REMARK 500 3 ALA A 140 -166.57 -122.23 REMARK 500 4 PHE A 12 -84.42 -57.21 REMARK 500 4 ASP A 39 12.58 -62.77 REMARK 500 4 ASP A 40 71.52 54.54 REMARK 500 4 ASP A 60 127.71 -178.10 REMARK 500 4 VAL A 61 32.95 -172.56 REMARK 500 4 PRO A 64 -140.86 -100.74 REMARK 500 4 PRO A 103 24.48 -68.68 REMARK 500 4 ASN A 126 -126.62 -135.00 REMARK 500 4 TRP A 127 99.71 -67.11 REMARK 500 5 PHE A 12 -74.95 -47.78 REMARK 500 5 TYR A 34 13.39 -64.92 REMARK 500 5 LYS A 38 54.28 -90.65 REMARK 500 5 ASP A 40 70.44 63.08 REMARK 500 5 ASP A 60 123.96 -177.40 REMARK 500 5 VAL A 61 34.57 -178.67 REMARK 500 5 PRO A 64 -138.98 -97.91 REMARK 500 5 PRO A 103 59.01 -69.20 REMARK 500 5 VAL A 128 109.12 -40.01 REMARK 500 5 LEU A 133 111.40 -160.09 REMARK 500 6 GLU A 3 -70.57 -49.06 REMARK 500 6 PHE A 12 -84.37 -55.23 REMARK 500 6 TYR A 34 9.80 -62.86 REMARK 500 6 ASP A 40 70.47 63.04 REMARK 500 6 ASP A 60 116.86 -176.02 REMARK 500 6 VAL A 61 31.37 -155.00 REMARK 500 6 PRO A 64 -138.18 -104.18 REMARK 500 6 PRO A 103 38.63 -69.28 REMARK 500 6 LYS A 107 -76.09 -35.69 REMARK 500 6 ASN A 126 -79.25 64.64 REMARK 500 7 GLU A 3 -70.80 -50.79 REMARK 500 7 PHE A 12 -82.11 -57.56 REMARK 500 7 TYR A 34 9.66 -64.24 REMARK 500 7 ASP A 40 70.66 63.09 REMARK 500 7 ASP A 60 119.76 -176.16 REMARK 500 7 VAL A 61 34.04 -178.40 REMARK 500 7 PRO A 64 -139.64 -95.01 REMARK 500 7 PRO A 103 31.24 -68.79 REMARK 500 7 LYS A 107 -74.35 -34.73 REMARK 500 7 ASN A 126 -90.70 54.60 REMARK 500 7 PRO A 129 -85.99 -61.54 REMARK 500 7 ALA A 140 -76.17 -104.53 REMARK 500 7 GLU A 141 156.40 67.88 REMARK 500 8 GLU A 3 -74.17 -51.62 REMARK 500 8 PHE A 12 -79.48 -56.44 REMARK 500 8 MET A 43 92.85 -67.65 REMARK 500 8 ASP A 60 101.33 -178.90 REMARK 500 8 VAL A 61 50.22 -148.95 REMARK 500 8 PRO A 64 -139.84 -98.68 REMARK 500 8 PRO A 103 91.14 -57.07 REMARK 500 8 ASN A 126 177.06 65.12 REMARK 500 8 ASP A 132 -178.34 62.83 REMARK 500 8 LEU A 133 147.67 178.59 REMARK 500 8 VAL A 134 101.81 -56.15 REMARK 500 9 PHE A 12 -72.41 -48.97 REMARK 500 9 ALA A 15 56.16 -144.38 REMARK 500 9 ASP A 40 70.90 75.01 REMARK 500 9 ASP A 60 126.20 -174.61 REMARK 500 9 VAL A 61 38.19 179.89 REMARK 500 9 PRO A 64 -142.31 -98.28 REMARK 500 9 PRO A 103 22.97 -72.02 REMARK 500 9 LYS A 107 -63.35 -29.72 REMARK 500 9 ASN A 126 -162.84 67.49 REMARK 500 9 PRO A 129 75.83 -69.63 REMARK 500 9 MET A 131 156.96 61.99 REMARK 500 9 GLU A 137 -76.93 -81.79 REMARK 500 9 VAL A 138 117.24 65.51 REMARK 500 10 TYR A 34 11.56 -67.84 REMARK 500 10 ASP A 60 121.31 -175.70 REMARK 500 10 VAL A 61 36.82 -177.28 REMARK 500 10 PRO A 64 -145.45 -96.41 REMARK 500 10 PRO A 103 71.87 -66.45 REMARK 500 10 LYS A 107 -55.87 -29.25 REMARK 500 10 ASN A 126 123.44 75.92 REMARK 500 10 TRP A 127 -158.15 50.04 REMARK 500 11 GLU A 3 -70.57 -51.10 REMARK 500 11 PHE A 12 -73.90 -50.08 REMARK 500 11 TYR A 34 10.07 -66.58 REMARK 500 11 ASP A 39 13.48 -63.47 REMARK 500 11 ASP A 40 70.47 58.06 REMARK 500 11 ASP A 60 111.70 -175.05 REMARK 500 11 VAL A 61 32.79 -176.00 REMARK 500 11 PRO A 64 -139.80 -104.87 REMARK 500 11 ASN A 126 -160.28 46.82 REMARK 500 11 VAL A 128 145.53 67.62 REMARK 500 11 GLU A 141 -70.53 -130.71 REMARK 500 12 PHE A 12 -79.94 -58.70 REMARK 500 12 ALA A 15 55.74 -143.06 REMARK 500 12 ASP A 40 71.40 67.32 REMARK 500 12 MET A 43 93.19 -68.95 REMARK 500 12 ASP A 60 117.17 -176.27 REMARK 500 12 VAL A 61 32.33 -166.43 REMARK 500 12 PRO A 64 -146.69 -97.04 REMARK 500 12 PRO A 103 35.10 -71.28 REMARK 500 12 LYS A 107 -71.83 -29.92 REMARK 500 12 ASN A 126 -110.09 52.24 REMARK 500 12 VAL A 128 83.09 62.62 REMARK 500 13 PHE A 12 -74.20 -46.70 REMARK 500 13 ASP A 40 70.35 64.63 REMARK 500 13 MET A 43 92.44 -68.03 REMARK 500 13 ASN A 53 77.15 -118.60 REMARK 500 13 LEU A 55 -74.95 -66.77 REMARK 500 13 ASP A 60 121.26 -176.22 REMARK 500 13 VAL A 61 43.34 -179.47 REMARK 500 13 PRO A 64 -138.85 -97.72 REMARK 500 13 PRO A 103 40.72 -69.44 REMARK 500 13 LYS A 107 -58.74 -28.79 REMARK 500 13 ASN A 130 -72.19 68.17 REMARK 500 13 ILE A 135 83.53 61.45 REMARK 500 13 ALA A 140 130.39 68.98 REMARK 500 14 PHE A 12 -71.91 -46.67 REMARK 500 14 ALA A 15 106.14 -160.12 REMARK 500 14 TYR A 34 8.18 -64.67 REMARK 500 14 ASP A 60 116.59 -177.19 REMARK 500 14 VAL A 61 32.89 -173.31 REMARK 500 14 PRO A 64 -141.59 -99.15 REMARK 500 14 PRO A 103 23.88 -73.48 REMARK 500 14 LYS A 107 -72.32 -29.39 REMARK 500 14 ASN A 126 -86.75 69.29 REMARK 500 14 PRO A 129 93.01 -68.18 REMARK 500 14 ASN A 130 165.69 176.23 REMARK 500 14 GLU A 137 84.21 53.24 REMARK 500 15 GLU A 3 -70.61 -50.17 REMARK 500 15 PHE A 12 -85.43 -55.02 REMARK 500 15 TYR A 34 12.37 -67.90 REMARK 500 15 LEU A 55 -78.20 -46.46 REMARK 500 15 ASP A 60 122.53 -174.01 REMARK 500 15 VAL A 61 33.83 -177.11 REMARK 500 15 PRO A 64 -144.78 -91.81 REMARK 500 15 PRO A 103 24.81 -69.59 REMARK 500 15 TRP A 127 107.17 -57.78 REMARK 500 15 VAL A 128 83.10 38.53 REMARK 500 16 PHE A 12 -74.20 -48.26 REMARK 500 16 TYR A 34 11.89 -65.58 REMARK 500 16 ASN A 35 98.91 -63.75 REMARK 500 16 ASP A 60 113.11 -175.45 REMARK 500 16 VAL A 61 33.30 -175.38 REMARK 500 16 PRO A 64 -139.21 -97.06 REMARK 500 16 PRO A 103 24.64 -70.22 REMARK 500 16 LYS A 107 -73.62 -29.03 REMARK 500 16 ASN A 126 120.09 72.46 REMARK 500 16 VAL A 128 90.23 71.28 REMARK 500 16 ASN A 130 -74.24 -117.44 REMARK 500 16 MET A 131 75.33 35.55 REMARK 500 16 ILE A 135 124.60 73.42 REMARK 500 17 PHE A 12 -77.48 -50.41 REMARK 500 17 TYR A 34 11.64 -68.59 REMARK 500 17 ASP A 40 32.25 70.42 REMARK 500 17 MET A 43 94.38 -69.31 REMARK 500 17 ASP A 60 119.86 -175.24 REMARK 500 17 VAL A 61 32.52 -171.11 REMARK 500 17 PRO A 64 -139.43 -99.72 REMARK 500 17 PRO A 103 24.94 -69.07 REMARK 500 17 LYS A 107 -58.49 -29.26 REMARK 500 17 ASN A 126 168.34 64.47 REMARK 500 17 PRO A 129 94.34 -54.43 REMARK 500 17 GLU A 141 -86.77 -95.06 REMARK 500 18 PHE A 12 -77.94 -46.76 REMARK 500 18 TYR A 34 11.66 -68.97 REMARK 500 18 ASP A 40 35.50 75.28 REMARK 500 18 ASP A 60 116.68 -177.41 REMARK 500 18 VAL A 61 33.52 -167.30 REMARK 500 18 PRO A 64 -147.90 -91.17 REMARK 500 18 PRO A 103 47.10 -70.84 REMARK 500 18 ASN A 126 -56.41 72.86 REMARK 500 18 TRP A 127 87.58 -67.70 REMARK 500 18 PRO A 129 44.10 -73.61 REMARK 500 18 LEU A 133 108.65 -160.74 REMARK 500 19 PHE A 12 -77.30 -52.19 REMARK 500 19 ALA A 15 59.43 -145.48 REMARK 500 19 TYR A 34 10.56 -69.04 REMARK 500 19 ASP A 39 12.89 -63.81 REMARK 500 19 ASP A 40 70.89 60.02 REMARK 500 19 ASN A 53 44.74 -104.75 REMARK 500 19 ASP A 60 121.75 -178.29 REMARK 500 19 VAL A 61 34.50 -176.63 REMARK 500 19 PRO A 64 -140.27 -97.47 REMARK 500 19 PRO A 103 49.32 -70.51 REMARK 500 19 LYS A 107 -75.28 -30.05 REMARK 500 19 ASN A 126 110.98 68.86 REMARK 500 19 LEU A 133 76.45 -101.54 REMARK 500 19 VAL A 134 75.00 35.56 REMARK 500 20 PHE A 12 -77.99 -50.24 REMARK 500 20 ASP A 40 70.61 62.63 REMARK 500 20 ASP A 60 112.78 -175.09 REMARK 500 20 VAL A 61 32.24 -170.30 REMARK 500 20 PRO A 64 -143.42 -97.26 REMARK 500 20 PRO A 103 84.77 -64.12 REMARK 500 20 LYS A 107 -76.14 -29.28 REMARK 500 20 ILE A 135 111.12 73.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LS8 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE UNLIGANDED BOMBYX MORI PHEROMONE- REMARK 900 BINDING PROTEIN AT PHYSIOLOGICAL PH DBREF 1QWV A 1 142 UNP P20797 PBP_ANTPO 22 163 SEQRES 1 A 142 SER PRO GLU ILE MET LYS ASN LEU SER ASN ASN PHE GLY SEQRES 2 A 142 LYS ALA MET ASP GLN CYS LYS ASP GLU LEU SER LEU PRO SEQRES 3 A 142 ASP SER VAL VAL ALA ASP LEU TYR ASN PHE TRP LYS ASP SEQRES 4 A 142 ASP TYR VAL MET THR ASP ARG LEU ALA GLY CYS ALA ILE SEQRES 5 A 142 ASN CYS LEU ALA THR LYS LEU ASP VAL VAL ASP PRO ASP SEQRES 6 A 142 GLY ASN LEU HIS HIS GLY ASN ALA LYS ASP PHE ALA MET SEQRES 7 A 142 LYS HIS GLY ALA ASP GLU THR MET ALA GLN GLN LEU VAL SEQRES 8 A 142 ASP ILE ILE HIS GLY CYS GLU LYS SER ALA PRO PRO ASN SEQRES 9 A 142 ASP ASP LYS CYS MET LYS THR ILE ASP VAL ALA MET CYS SEQRES 10 A 142 PHE LYS LYS GLU ILE HIS LYS LEU ASN TRP VAL PRO ASN SEQRES 11 A 142 MET ASP LEU VAL ILE GLY GLU VAL LEU ALA GLU VAL HELIX 1 1 SER A 1 LYS A 6 1 6 HELIX 2 2 ASN A 7 GLY A 13 1 7 HELIX 3 3 ALA A 15 SER A 24 1 10 HELIX 4 4 PRO A 26 TYR A 34 1 9 HELIX 5 5 ASP A 45 ASN A 53 1 9 HELIX 6 6 CYS A 54 ASP A 60 1 7 HELIX 7 7 HIS A 70 HIS A 80 1 11 HELIX 8 8 ASP A 83 SER A 100 1 18 HELIX 9 9 MET A 109 ASN A 126 1 18 SSBOND 1 CYS A 19 CYS A 54 1555 1555 2.03 SSBOND 2 CYS A 50 CYS A 108 1555 1555 2.03 SSBOND 3 CYS A 97 CYS A 117 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 290 0 0 9 0 0 0 6 0 0 0 11 END