HEADER TRANSFERASE 19-OCT-99 1QNL TITLE AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDOMONAS TITLE 2 AERUGINOSA (AMIC) COMPLEXED WITH BUTYRAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALIPHATIC AMIDASE EXPRESSION-REGULATING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMIDE RECEPTOR/NEGATIVE REGULATOR, RESIDUES 7-374; COMPND 5 SYNONYM: AMIC; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: BUTYRAMIDE COMPLEX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PAC1; SOURCE 5 EXPRESSION_SYSTEM: PSEUDOMONAS AERUGINOSA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 287 KEYWDS BINDING PROTEIN, GENE REGULATOR, RECEPTOR, KINASE, REPRESSOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.H.PEARL,B.P.O'HARA,S.M.ROE REVDAT 6 08-MAY-19 1QNL 1 REMARK REVDAT 5 05-JUL-17 1QNL 1 REMARK REVDAT 4 16-JUN-09 1QNL 1 REMARK REVDAT 3 24-FEB-09 1QNL 1 VERSN REVDAT 2 10-APR-00 1QNL 1 JRNL REVDAT 1 23-DEC-99 1QNL 0 JRNL AUTH B.P.O'HARA,S.A.WILSON,A.W.L.LEE,S.M.ROE,G.SILIGARDI, JRNL AUTH 2 R.E.DREW,L.H.PEARL JRNL TITL STRUCTURAL ADAPTATION TO SELECTIVE PRESSURE FOR ALTERED JRNL TITL 2 LIGAND SPECIFICITY IN THE PSEUDOMONAS AERUGINOSA AMIDE JRNL TITL 3 RECEPTOR, AMIC JRNL REF PROTEIN ENG. V. 13 129 2000 JRNL REFN ISSN 0269-2139 JRNL PMID 10708652 JRNL DOI 10.1093/PROTEIN/13.2.129 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.H.PEARL,B.P.O'HARA,R.E.DREW,S.A.WILSON REMARK 1 TITL CRYSTAL STRUCTURE OF AMIC: THE CONTROLLER OF TRANSCRIPTION REMARK 1 TITL 2 ANTITERMINATION IN THE AMIDASE OPERON OF PSEUDOMONAS REMARK 1 TITL 3 AERUGINOSA REMARK 1 REF EMBO J. V. 13 5810 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 7813419 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.A.WILSON,S.J.WACHIRA,R.E.DREW,D.JONES,L.H.PEARL REMARK 1 TITL ANTITERMINATION OF AMIDASE EXPRESSION IN PSEUDOMONAS REMARK 1 TITL 2 AERUGINOSA IS CONTROLLED BY A NOVEL CYTOPLASMIC AMIDE- REMARK 1 TITL 3 BINDING PROTEIN REMARK 1 REF EMBO J. V. 12 3637 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 8253087 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.A.WILSON,N.E.CHAYEN,A.M.HEMMINGS,R.E.DREW,L.H.PEARL REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DATA FOR THE NEGATIVE REMARK 1 TITL 2 REGULATOR (AMIC) OF THE AMIDASE OPERON OF PSEUDOMONAS REMARK 1 TITL 3 AERUGINOSA REMARK 1 REF J.MOL.BIOL. V. 222 869 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 1762155 REMARK 1 DOI 10.1016/0022-2836(91)90579-U REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 9546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.470 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.340 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.040 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.007 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.030 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.029 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.017 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.099 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.193 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.254 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.181 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 2.800 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 20.300; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 30.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.665 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.967 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.012 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 2 - 7, 40 - 50, 222 - 226, 347 REMARK 3 - 349 AND 376 - 385 IN THIS MOLECULE ARE NOT DEFINED IN THE REMARK 3 ELECTRON DENSITY AND ARE PRESUMED TO BE DISORDERED. THERE ARE REMARK 3 ALSO A FEW OTHER RESIDUES THAT COULD NOT BE SATISFACTORILY REMARK 3 REFINED, NAMELY: 37, 68, 72, 74, 137, 165, 194, 195, 261, 307, REMARK 3 318, 319, 328, 359. SOME OF THIS ARE MISSING MAIN CHAIN AS WELL REMARK 3 AS SIDE CHAIN ATOMS. REMARK 4 REMARK 4 1QNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1290004245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.18500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROBATCH CRYSTALLISATION. WELLS REMARK 280 CONTAIN 12.8MG/ML PAC181-AMIC, 5MM BUTYRAMIDE, 1.36M NA CITRATE, REMARK 280 100MM HEPES-NAOH PH7.5, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.07500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.84000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.07500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.84000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.07500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.07500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.84000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.07500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.07500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.84000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.15000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 104.15000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 104.15000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 104.15000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 GLN A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 SER A 376 REMARK 465 ALA A 377 REMARK 465 SER A 378 REMARK 465 MET A 379 REMARK 465 GLY A 380 REMARK 465 GLY A 381 REMARK 465 GLY A 382 REMARK 465 PRO A 383 REMARK 465 LEU A 384 REMARK 465 PRO A 385 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 40 REMARK 475 GLU A 41 REMARK 475 GLY A 42 REMARK 475 GLY A 43 REMARK 475 VAL A 44 REMARK 475 GLY A 45 REMARK 475 GLY A 46 REMARK 475 ARG A 47 REMARK 475 PRO A 48 REMARK 475 ILE A 49 REMARK 475 GLU A 50 REMARK 475 GLU A 68 REMARK 475 ARG A 72 REMARK 475 ARG A 137 REMARK 475 TYR A 194 REMARK 475 GLN A 195 REMARK 475 GLY A 222 REMARK 475 ASP A 223 REMARK 475 GLY A 224 REMARK 475 ARG A 225 REMARK 475 ARG A 226 REMARK 475 ASP A 261 REMARK 475 ARG A 307 REMARK 475 ILE A 318 REMARK 475 ASP A 319 REMARK 475 ARG A 328 REMARK 475 ALA A 347 REMARK 475 ARG A 348 REMARK 475 GLY A 349 REMARK 475 GLU A 359 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 37 CG CD OE1 NE2 REMARK 480 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 49 O HOH A 2004 0.10 REMARK 500 CG1 ILE A 318 O HOH A 2031 0.23 REMARK 500 CG1 ILE A 49 O HOH A 2005 0.32 REMARK 500 O GLY A 349 O HOH A 2040 0.38 REMARK 500 O ARG A 307 O HOH A 2030 0.40 REMARK 500 C ARG A 40 O HOH A 2002 0.42 REMARK 500 O GLU A 359 O HOH A 2042 0.43 REMARK 500 N GLN A 195 O HOH A 2024 0.46 REMARK 500 CA GLU A 68 O HOH A 2008 0.47 REMARK 500 C ALA A 347 O HOH A 2039 0.51 REMARK 500 CG2 ILE A 318 O HOH A 2014 0.61 REMARK 500 CZ ARG A 328 O HOH A 2035 0.76 REMARK 500 CA TYR A 194 O HOH A 2023 0.85 REMARK 500 CB TYR A 194 O HOH A 2023 0.87 REMARK 500 CA ARG A 328 O HOH A 2034 0.89 REMARK 500 O ARG A 226 O HOH A 2026 0.90 REMARK 500 C ARG A 72 O HOH A 2009 0.93 REMARK 500 NH2 ARG A 328 O HOH A 2035 0.93 REMARK 500 O ALA A 347 O HOH A 2039 1.00 REMARK 500 CA GLN A 195 O HOH A 2024 1.00 REMARK 500 CB ARG A 328 O HOH A 2034 1.01 REMARK 500 O ARG A 40 O HOH A 2002 1.03 REMARK 500 CB GLU A 68 O HOH A 2008 1.07 REMARK 500 CD ARG A 328 O HOH A 2032 1.08 REMARK 500 C ILE A 49 O HOH A 2004 1.13 REMARK 500 N GLU A 41 O HOH A 2002 1.15 REMARK 500 C GLU A 359 O HOH A 2042 1.15 REMARK 500 N ARG A 348 O HOH A 2039 1.18 REMARK 500 O ARG A 72 O HOH A 2009 1.19 REMARK 500 NH1 ARG A 328 O HOH A 2035 1.27 REMARK 500 C ARG A 307 O HOH A 2030 1.27 REMARK 500 CD1 ILE A 318 O HOH A 2031 1.29 REMARK 500 C ARG A 226 O HOH A 2026 1.32 REMARK 500 CA ARG A 72 O HOH A 2009 1.36 REMARK 500 O TYR A 221 N GLY A 222 1.41 REMARK 500 C GLY A 349 O HOH A 2040 1.48 REMARK 500 CD1 ILE A 49 O HOH A 2005 1.48 REMARK 500 O ASP A 261 O HOH A 2028 1.49 REMARK 500 CB ILE A 318 O HOH A 2031 1.53 REMARK 500 O ARG A 328 N VAL A 329 1.54 REMARK 500 CB ILE A 49 O HOH A 2005 1.55 REMARK 500 C ARG A 328 O HOH A 2034 1.58 REMARK 500 C TYR A 194 O HOH A 2024 1.60 REMARK 500 O ASP A 317 N ILE A 318 1.62 REMARK 500 N GLU A 68 O HOH A 2008 1.62 REMARK 500 CG TYR A 194 O HOH A 2023 1.67 REMARK 500 C TYR A 194 O HOH A 2023 1.68 REMARK 500 C GLU A 68 O HOH A 2008 1.70 REMARK 500 CG ARG A 328 O HOH A 2034 1.74 REMARK 500 CB ARG A 72 O HOH A 2009 1.83 REMARK 500 REMARK 500 THIS ENTRY HAS 69 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 37 CB GLN A 37 CG -0.197 REMARK 500 GLU A 50 C THR A 51 N -0.214 REMARK 500 ALA A 67 C GLU A 68 N 0.247 REMARK 500 GLU A 68 C ASP A 69 N -0.168 REMARK 500 ARG A 72 C ASN A 73 N 0.218 REMARK 500 TYR A 221 C GLY A 222 N -0.254 REMARK 500 ASP A 261 C THR A 262 N -0.363 REMARK 500 ARG A 307 C VAL A 308 N 0.272 REMARK 500 ASP A 317 C ILE A 318 N -0.221 REMARK 500 VAL A 327 C ARG A 328 N -0.169 REMARK 500 ARG A 328 C VAL A 329 N -0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 29 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 ASN A 39 O - C - N ANGL. DEV. = -32.2 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 41 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 GLU A 41 CG - CD - OE2 ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 47 N - CA - CB ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 47 NH1 - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 GLU A 50 OE1 - CD - OE2 ANGL. DEV. = -11.8 DEGREES REMARK 500 GLU A 50 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU A 50 O - C - N ANGL. DEV. = -19.5 DEGREES REMARK 500 THR A 51 C - N - CA ANGL. DEV. = 29.4 DEGREES REMARK 500 ASP A 61 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU A 68 OE1 - CD - OE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 GLU A 68 O - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 ASP A 69 C - N - CA ANGL. DEV. = 22.1 DEGREES REMARK 500 ARG A 72 CB - CG - CD ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 74 NH1 - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 137 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 165 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ILE A 193 O - C - N ANGL. DEV. = -20.1 DEGREES REMARK 500 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR A 221 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 TYR A 221 O - C - N ANGL. DEV. = -48.3 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ILE A 260 O - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 261 CA - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP A 261 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 THR A 262 C - N - CA ANGL. DEV. = 34.9 DEGREES REMARK 500 ARG A 266 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -9.1 DEGREES REMARK 500 VAL A 308 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 ASP A 317 O - C - N ANGL. DEV. = -35.6 DEGREES REMARK 500 ASP A 319 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 319 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 VAL A 327 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 328 CD - NE - CZ ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 328 NH1 - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 328 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 328 CA - C - N ANGL. DEV. = 34.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 35.31 -170.67 REMARK 500 CYS A 82 140.59 79.30 REMARK 500 TYR A 83 -78.05 -123.47 REMARK 500 ASN A 127 -51.03 -131.08 REMARK 500 ARG A 137 49.18 -91.60 REMARK 500 HIS A 138 -18.82 171.12 REMARK 500 TYR A 139 -24.97 -143.47 REMARK 500 ARG A 225 116.01 -9.73 REMARK 500 ASP A 261 -26.35 -29.87 REMARK 500 PHE A 275 -37.82 -141.28 REMARK 500 TRP A 306 54.86 -105.28 REMARK 500 ARG A 313 -63.92 -27.05 REMARK 500 VAL A 329 100.10 -37.98 REMARK 500 ASN A 333 9.73 -150.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 261 THR A 262 -147.28 REMARK 500 ARG A 328 VAL A 329 116.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 39 -37.01 REMARK 500 ILE A 136 -12.57 REMARK 500 ILE A 193 -12.59 REMARK 500 TYR A 221 -44.80 REMARK 500 ILE A 260 29.09 REMARK 500 TRP A 306 -12.39 REMARK 500 ASP A 317 -38.29 REMARK 500 ASP A 319 10.22 REMARK 500 VAL A 327 -12.43 REMARK 500 ARG A 328 17.18 REMARK 500 ASP A 346 -35.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 2001 REMARK 615 HOH A 2003 REMARK 615 HOH A 2006 REMARK 615 HOH A 2017 REMARK 615 HOH A 2041 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMD A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PEA RELATED DB: PDB REMARK 900 AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF REMARK 900 PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH ACETAMIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISSPROT HAS THE WRONG SEQUENCE, STRUCTURE IS CORRECT. REMARK 999 GLN 27 UNP P27017 HIS 26 REMARK 999 ARG 28 UNP P27017 ALA 27 DBREF 1QNL A 8 375 UNP P27017 AMIC_PSEAE 7 374 SEQADV 1QNL GLN A 27 UNP P27017 HIS 26 CONFLICT SEQADV 1QNL ARG A 28 UNP P27017 ALA 27 CONFLICT SEQRES 1 A 385 MET GLY SER HIS GLN GLU ARG PRO LEU ILE GLY LEU LEU SEQRES 2 A 385 PHE SER GLU THR GLY VAL THR ALA ASP ILE GLU ARG SER SEQRES 3 A 385 GLN ARG TYR GLY ALA LEU LEU ALA VAL GLU GLN LEU ASN SEQRES 4 A 385 ARG GLU GLY GLY VAL GLY GLY ARG PRO ILE GLU THR LEU SEQRES 5 A 385 SER GLN ASP PRO GLY GLY ASP PRO ASP ARG TYR ARG LEU SEQRES 6 A 385 CYS ALA GLU ASP PHE ILE ARG ASN ARG GLY VAL ARG PHE SEQRES 7 A 385 LEU VAL GLY CYS TYR MET SER HIS THR ARG LYS ALA VAL SEQRES 8 A 385 MET PRO VAL VAL GLU ARG ALA ASP ALA LEU LEU CYS TYR SEQRES 9 A 385 PRO ASN PRO TYR GLU GLY PHE GLU TYR SER PRO ASN ILE SEQRES 10 A 385 VAL TYR GLY GLY PRO ALA PRO ASN GLN ASN SER ALA PRO SEQRES 11 A 385 LEU ALA ALA TYR LEU ILE ARG HIS TYR GLY GLU ARG VAL SEQRES 12 A 385 VAL PHE ILE GLY SER ASP TYR ILE TYR PRO ARG GLU SER SEQRES 13 A 385 ASN HIS VAL MET ARG HIS LEU TYR ARG GLN HIS GLY GLY SEQRES 14 A 385 THR VAL LEU GLU GLU ILE TYR ILE PRO LEU TYR PRO SER SEQRES 15 A 385 ASP ASP ASP LEU GLN ARG ALA VAL GLU ARG ILE TYR GLN SEQRES 16 A 385 ALA ARG ALA ASP VAL VAL PHE SER THR VAL VAL GLY THR SEQRES 17 A 385 GLY THR ALA GLU LEU TYR ARG ALA ILE ALA ARG ARG TYR SEQRES 18 A 385 GLY ASP GLY ARG ARG PRO PRO ILE ALA SER LEU THR THR SEQRES 19 A 385 SER GLU ALA GLU VAL ALA LYS MET GLU SER ASP VAL ALA SEQRES 20 A 385 GLU GLY GLN VAL VAL VAL ALA PRO TYR PHE SER SER ILE SEQRES 21 A 385 ASP THR PRO ALA SER ARG ALA PHE VAL GLN ALA CYS HIS SEQRES 22 A 385 GLY PHE PHE PRO GLU ASN ALA THR ILE THR ALA TRP ALA SEQRES 23 A 385 GLU ALA ALA TYR TRP GLN THR LEU LEU LEU GLY ARG ALA SEQRES 24 A 385 ALA GLN ALA ALA GLY ASN TRP ARG VAL GLU ASP VAL GLN SEQRES 25 A 385 ARG HIS LEU TYR ASP ILE ASP ILE ASP ALA PRO GLN GLY SEQRES 26 A 385 PRO VAL ARG VAL GLU ARG GLN ASN ASN HIS SER ARG LEU SEQRES 27 A 385 SER SER ARG ILE ALA GLU ILE ASP ALA ARG GLY VAL PHE SEQRES 28 A 385 GLN VAL ARG TRP GLN SER PRO GLU PRO ILE ARG PRO ASP SEQRES 29 A 385 PRO TYR VAL VAL VAL HIS ASN LEU ASP ASP TRP SER ALA SEQRES 30 A 385 SER MET GLY GLY GLY PRO LEU PRO HET BMD A1001 6 HETNAM BMD BUTYRAMIDE FORMUL 2 BMD C4 H9 N O FORMUL 3 HOH *43(H2 O) HELIX 1 1 THR A 20 ARG A 40 1 21 HELIX 2 2 ASP A 59 ARG A 74 1 16 HELIX 3 3 MET A 84 ALA A 98 1 15 HELIX 4 4 ALA A 123 GLY A 140 1 18 HELIX 5 5 TYR A 150 HIS A 167 1 18 HELIX 6 6 SER A 182 ARG A 197 1 16 HELIX 7 7 THR A 208 GLY A 222 1 15 HELIX 8 8 SER A 235 ALA A 240 1 6 HELIX 9 9 GLU A 243 GLU A 248 1 6 HELIX 10 10 THR A 262 GLY A 274 1 13 HELIX 11 11 THR A 283 GLY A 304 1 22 HELIX 12 12 ARG A 307 TYR A 316 1 10 HELIX 13 13 VAL A 368 LEU A 372 5 5 SHEET 1 A 5 GLU A 50 GLN A 54 0 SHEET 2 A 5 LEU A 9 LEU A 13 1 N ILE A 10 O GLU A 50 SHEET 3 A 5 PHE A 78 GLY A 81 1 N PHE A 78 O GLY A 11 SHEET 4 A 5 LEU A 101 TYR A 104 1 N LEU A 101 O LEU A 79 SHEET 5 A 5 ILE A 117 TYR A 119 1 N VAL A 118 O LEU A 102 SHEET 1 B 4 PRO A 228 SER A 231 0 SHEET 2 B 4 VAL A 200 THR A 204 1 N VAL A 201 O PRO A 228 SHEET 3 B 4 ARG A 142 SER A 148 1 N VAL A 144 O VAL A 200 SHEET 4 B 4 THR A 170 ILE A 177 1 N THR A 170 O VAL A 143 SHEET 1 C 3 VAL A 251 ALA A 254 0 SHEET 2 C 3 ARG A 341 ILE A 345 -1 N ALA A 343 O VAL A 252 SHEET 3 C 3 PHE A 351 GLN A 356 -1 N TRP A 355 O ILE A 342 SHEET 1 D 2 ILE A 320 ALA A 322 0 SHEET 2 D 2 GLY A 325 VAL A 327 -1 N VAL A 327 O ILE A 320 SITE 1 AC1 9 TYR A 83 MET A 84 SER A 85 TYR A 104 SITE 2 AC1 9 PRO A 107 TYR A 108 TYR A 150 TYR A 152 SITE 3 AC1 9 THR A 233 CRYST1 104.150 104.150 65.680 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009601 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015225 0.00000 MASTER 580 0 1 13 14 0 3 6 0 0 0 30 END