HEADER TATA BOX-BINDING PROTEIN (TBP) 14-OCT-99 1QN8 TITLE CRYSTAL STRUCTURE OF THE T(-28) ADENOVIRUS MAJOR LATE PROMOTER TATA TITLE 2 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM TITLE 3 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN TITLE 4 CONSERVED THROUGHOUT EVOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TATA-BOX FACTOR 1, TATA SEQUENCE-BINDING PROTEIN 1, TBP1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*A)-3'); COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*TP*AP*GP*C)-3'); COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS TATA BOX-BINDING PROTEIN (TBP), ADENOVIRUS MAJOR LATE PROMOTER KEYWDS 2 (ADMLP) TATA BOX, TBP-TATA ELEMENT COMPLEXES, T (- 28) TATA BOX KEYWDS 3 VARIANT EXPDTA X-RAY DIFFRACTION AUTHOR G.A.PATIKOGLOU,J.L.KIM,L.SUN,S.-H.YANG,T.KODADEK,S.K.BURLEY REVDAT 4 03-FEB-21 1QN8 1 AUTHOR JRNL REVDAT 3 24-FEB-09 1QN8 1 VERSN REVDAT 2 07-JUN-06 1QN8 1 COMPND REMARK FORMUL TER REVDAT 2 2 1 ATOM REVDAT 1 07-FEB-00 1QN8 0 JRNL AUTH G.A.PATIKOGLOU,J.L.KIM,L.SUN,S.-H.YANG,T.KODADEK,S.K.BURLEY JRNL TITL TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS JRNL TITL 2 BEEN CONSERVED THROUGHOUT EVOLUTION JRNL REF GENES DEV. V. 13 3217 1999 JRNL REFN ISSN 0890-9369 JRNL PMID 10617571 JRNL DOI 10.1101/GAD.13.24.3217 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 36307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3284 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2916 REMARK 3 NUCLEIC ACID ATOMS : 1134 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1290004267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 DNA MOLECULES BOUND WITHIN THE SERIES REMARK 400 REMARK 400 CHAIN C, E CHAIN D, F REMARK 400 1QN3 GCTATAAACGGGCA TGCCCGTTTATAGC REMARK 400 1QN4 GCTATAAAATGGCA TGCCATTTTATAGC REMARK 400 1QN5 GCTATAAGAGGGCA TGCCCTCTTATAGC REMARK 400 1QN6 GCTATAATAGGGCA TGCCCTATTATAGC REMARK 400 1QN7 GCTATATAAGGGCA TGCCCTTATATAGC REMARK 400 1QN8 GCTATTAAAGGGCA TGCCCTTTAATAGC REMARK 400 1QN9 GCTACAAAAGGGCA TGCCCTTTTGTAGC REMARK 400 1QNA GCTTTAAAAGGGCA TGCCCTTTTAAAGC REMARK 400 1QNB GCTATAAATGGGCA TGCCCATTTATAGC REMARK 400 1QNC GCAATAAAAGGGCA TGCCCTTTTATTGC REMARK 400 1QNE GCTATAAAAGGGCA TGCCCTTTTATAGC REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 PRO A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 GLN A 199 REMARK 465 GLN A 200 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 199 REMARK 465 GLN B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN B 49 CG OD1 ND2 REMARK 470 DG C 201 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2032 O HOH A 2034 0.77 REMARK 500 O HOH A 2013 O HOH A 2033 1.93 REMARK 500 OP2 DG C 211 O HOH C 2026 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2108 O HOH B 2016 2456 1.91 REMARK 500 O HOH A 2046 O HOH F 2019 2456 2.10 REMARK 500 O HOH B 2012 O HOH C 2018 2446 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT F 222 C5 DT F 222 C7 0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 201 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 205 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT C 206 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA C 207 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DA C 209 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG C 210 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 211 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 213 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 213 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 215 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DC D 217 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC D 218 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT D 220 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT D 222 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA D 223 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 224 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT D 225 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 225 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA D 226 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 201 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG E 201 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC E 202 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT E 203 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT E 203 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA E 208 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA E 209 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG E 210 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC E 213 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA E 214 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA E 214 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT F 215 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DC F 217 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DC F 217 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC F 218 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT F 220 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT F 220 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT F 221 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA F 224 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT F 225 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT F 225 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA F 226 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 138.67 -170.57 REMARK 500 ASN A 49 59.27 -94.51 REMARK 500 LYS A 109 -161.30 -106.02 REMARK 500 PHE A 110 68.80 -151.51 REMARK 500 CYS B 36 145.28 -170.12 REMARK 500 ALA B 58 30.14 -74.85 REMARK 500 LYS B 109 -161.78 -112.04 REMARK 500 PHE B 110 69.93 -152.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QN3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QN4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE T(-24) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QN5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE G(-26) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QN6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE T(-26) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QN7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE T(-27) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QN9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C(-29) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QNA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE T(-30) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QNB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE T(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QNC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE A(-31) ADENOVIRUS MAJOR LATE PROMOTER TATA REMARK 900 BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP REMARK 900 ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING REMARK 900 PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. REMARK 900 RELATED ID: 1QNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ADENOVIRUS MAJOR LATE PROMOTER TATA BOX REMARK 900 BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). DBREF 1QN8 A 1 200 UNP P28147 TF21_ARATH 1 200 DBREF 1QN8 B 1 200 UNP P28147 TF21_ARATH 1 200 DBREF 1QN8 C 201 214 PDB 1QN8 1QN8 201 214 DBREF 1QN8 D 215 228 PDB 1QN8 1QN8 215 228 DBREF 1QN8 E 201 214 PDB 1QN8 1QN8 201 214 DBREF 1QN8 F 215 228 PDB 1QN8 1QN8 215 228 SEQRES 1 A 200 MET THR ASP GLN GLY LEU GLU GLY SER ASN PRO VAL ASP SEQRES 2 A 200 LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU GLN SEQRES 3 A 200 ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU ASP SEQRES 4 A 200 LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU TYR SEQRES 5 A 200 ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG SEQRES 6 A 200 GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY LYS SEQRES 7 A 200 MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER LYS SEQRES 8 A 200 MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS LEU SEQRES 9 A 200 GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN ASN SEQRES 10 A 200 ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU SEQRES 11 A 200 GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER TYR SEQRES 12 A 200 GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET LYS SEQRES 13 A 200 VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY LYS SEQRES 14 A 200 ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR TYR SEQRES 15 A 200 LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU PHE SEQRES 16 A 200 ARG LYS ILE GLN GLN SEQRES 1 B 200 MET THR ASP GLN GLY LEU GLU GLY SER ASN PRO VAL ASP SEQRES 2 B 200 LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU GLN SEQRES 3 B 200 ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU ASP SEQRES 4 B 200 LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU TYR SEQRES 5 B 200 ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG SEQRES 6 B 200 GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY LYS SEQRES 7 B 200 MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER LYS SEQRES 8 B 200 MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS LEU SEQRES 9 B 200 GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN ASN SEQRES 10 B 200 ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU SEQRES 11 B 200 GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER TYR SEQRES 12 B 200 GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET LYS SEQRES 13 B 200 VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY LYS SEQRES 14 B 200 ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR TYR SEQRES 15 B 200 LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU PHE SEQRES 16 B 200 ARG LYS ILE GLN GLN SEQRES 1 C 14 DG DC DT DA DT DT DA DA DA DG DG DG DC SEQRES 2 C 14 DA SEQRES 1 D 14 DT DG DC DC DC DT DT DT DA DA DT DA DG SEQRES 2 D 14 DC SEQRES 1 E 14 DG DC DT DA DT DT DA DA DA DG DG DG DC SEQRES 2 E 14 DA SEQRES 1 F 14 DT DG DC DC DC DT DT DT DA DA DT DA DG SEQRES 2 F 14 DC FORMUL 7 HOH *349(H2 O) HELIX 1 1 ASP A 39 ALA A 47 1 9 HELIX 2 2 SER A 86 LEU A 104 1 19 HELIX 3 3 ARG A 129 HIS A 137 1 9 HELIX 4 4 MET A 177 PHE A 195 1 19 HELIX 5 5 ASP B 39 ALA B 47 1 9 HELIX 6 6 SER B 86 LEU B 104 1 19 HELIX 7 7 ARG B 129 HIS B 137 1 9 HELIX 8 8 MET B 177 PHE B 195 1 19 SHEET 1 A 9 ALA A 50 TYR A 52 0 SHEET 2 A 9 ALA A 59 ILE A 64 -1 N ILE A 61 O GLU A 51 SHEET 3 A 9 THR A 69 PHE A 74 -1 N ILE A 73 O VAL A 60 SHEET 4 A 9 LYS A 78 THR A 82 -1 N THR A 82 O THR A 70 SHEET 5 A 9 THR A 24 ASN A 33 -1 N VAL A 32 O MET A 79 SHEET 6 A 9 ASN A 117 ASP A 123 -1 N SER A 121 O THR A 24 SHEET 7 A 9 LYS A 169 ALA A 175 -1 N ALA A 175 O ILE A 118 SHEET 8 A 9 ILE A 160 ILE A 164 -1 N LEU A 163 O VAL A 171 SHEET 9 A 9 LEU A 151 MET A 155 -1 N MET A 155 O ILE A 160 SHEET 1 B 9 ALA B 50 TYR B 52 0 SHEET 2 B 9 ALA B 59 ILE B 64 -1 N ILE B 61 O GLU B 51 SHEET 3 B 9 THR B 69 PHE B 74 -1 N ILE B 73 O VAL B 60 SHEET 4 B 9 LYS B 78 ALA B 84 -1 N THR B 82 O THR B 70 SHEET 5 B 9 THR B 24 ASN B 33 -1 N VAL B 32 O MET B 79 SHEET 6 B 9 ASN B 117 ASP B 123 -1 N SER B 121 O THR B 24 SHEET 7 B 9 LYS B 169 ALA B 175 -1 N ALA B 175 O ILE B 118 SHEET 8 B 9 ILE B 160 ILE B 164 -1 N LEU B 163 O VAL B 171 SHEET 9 B 9 LEU B 151 MET B 155 -1 N MET B 155 O ILE B 160 CISPEP 1 GLU A 66 PRO A 67 0 -0.55 CISPEP 2 VAL A 157 PRO A 158 0 -0.48 CISPEP 3 GLU B 66 PRO B 67 0 -0.76 CISPEP 4 VAL B 157 PRO B 158 0 -0.40 CRYST1 41.800 146.700 57.400 90.00 90.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023923 0.000000 0.000209 0.00000 SCALE2 0.000000 0.006817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017422 0.00000 MTRIX1 1 0.999990 0.001720 -0.002890 8.99841 1 MTRIX2 1 0.001760 -0.999890 0.014620 -88.32040 1 MTRIX3 1 -0.002870 -0.014630 -0.999890 217.52924 1 MASTER 453 0 0 8 18 0 0 9 0 0 0 40 END