HEADER TRANSCRIPTION/RNA 12-APR-99 1QFQ TITLE BACTERIOPHAGE LAMBDA N-PROTEIN-NUTBOXB-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 36-MER N-TERMINAL PEPTIDE OF THE N PROTEIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: N-TERMINAL BINDING-DOMAIN, RESIDUES 2-36; COMPND 5 SYNONYM: N36; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 15-MER NUTRBOXB RNA HAIRPIN; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: BACTERIOPHAGE LAMBDA NUT BOXB-RNA; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: NUTBOXB FROM THE NUTR-SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: SEQUENCE FROM BACTERIOPHAGE LAMBDA. RNA WAS SOURCE 9 UNIFORMLY LABELLED WITH (13)C AND (15)N KEYWDS BACTERIOPHAGE LAMBDA; ANTITERMINATION; PEPTIDE-RNA-COMPLEX; KEYWDS 2 N-NUT; GNRA TETRALOOP; BENT-ALPHA-HELIX; PEPTIDE-RNA- KEYWDS 3 RECOGNITION, TRANSCRIPTION/RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR M.SCHAERPF,H.STICHT,P.ROESCH REVDAT 3 24-FEB-09 1QFQ 1 VERSN REVDAT 2 04-JAN-05 1QFQ 1 HEADER COMPND SOURCE JRNL REVDAT 2 2 1 KEYWDS REMARK REVDAT 1 20-APR-99 1QFQ 0 JRNL AUTH M.SCHAERPF,H.STICHT,K.SCHWEIMER,M.BOEHM,S.HOFFMANN, JRNL AUTH 2 P.ROESCH JRNL TITL ANTITERMINATION IN BACTERIOPHAGE LAMBDA. THE JRNL TITL 2 STRUCTURE OF THE N36 PEPTIDE-BOXB RNA COMPLEX JRNL REF EUR.J.BIOCHEM. V. 267 2397 2000 JRNL REFN ISSN 0014-2956 JRNL PMID 10759866 JRNL DOI 10.1046/J.1432-1327.2000.01251.X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. REMARK 4 REMARK 4 1QFQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-99. REMARK 100 THE RCSB ID CODE IS RCSB000841. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% H2O/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : (1)H-(31)P-COSY, (1)H-(13)C- REMARK 210 CT- HSQC, (1)H-(15)N-HSQC, (1) REMARK 210 H-(1)H-COSY, (1)H-(1)H-TOCSY, REMARK 210 (1)H-(1)H-NOESY WITH 75 AND REMARK 210 150 MS MIXING TIME, '(13)C- REMARK 210 ED.-NOESY, (1)H-(15)N-(1)H- REMARK 210 NOESY-HSQC, (1)H-(15)N-(1)H- REMARK 210 TOCSY-HSQC, HNHA, (13)C-NOESY- REMARK 210 HSQC, HCCH-TOCSY, HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE, XNDEE, X-PLOR REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, AGREEMENT WITH REMARK 210 EXPERIMENTAL DATA REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' A A 11 OP1 G A 12 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN B 22 49.83 -153.46 REMARK 500 1 ARG B 35 70.69 -153.10 REMARK 500 2 ASN B 22 50.63 -155.23 REMARK 500 2 LEU B 25 33.82 -99.71 REMARK 500 2 SER B 29 -172.29 52.01 REMARK 500 3 ALA B 3 -41.38 -164.92 REMARK 500 3 ASN B 22 51.58 -154.37 REMARK 500 3 ASN B 34 54.60 -113.65 REMARK 500 4 ALA B 3 -39.75 -148.33 REMARK 500 4 ASN B 22 50.72 -154.96 REMARK 500 4 VAL B 28 172.87 -49.56 REMARK 500 4 SER B 29 79.79 -55.44 REMARK 500 4 ALA B 30 42.00 -175.40 REMARK 500 4 ARG B 35 54.63 -152.44 REMARK 500 5 ALA B 3 -39.64 -161.70 REMARK 500 5 ASN B 22 50.29 -155.08 REMARK 500 5 LEU B 25 35.12 -97.22 REMARK 500 5 LYS B 31 94.34 -162.83 REMARK 500 6 ALA B 3 -39.54 -145.59 REMARK 500 6 ASN B 22 51.91 -154.28 REMARK 500 6 LEU B 25 31.73 -99.39 REMARK 500 6 SER B 29 -167.84 52.06 REMARK 500 6 ALA B 30 78.31 51.44 REMARK 500 6 ARG B 35 108.45 -51.08 REMARK 500 7 ASN B 22 52.42 -155.40 REMARK 500 7 VAL B 28 170.35 -49.88 REMARK 500 7 SER B 29 42.83 -84.03 REMARK 500 7 ALA B 30 50.17 26.12 REMARK 500 7 PRO B 32 -168.32 -75.51 REMARK 500 8 ASN B 22 52.40 -155.35 REMARK 500 8 VAL B 28 171.19 -49.68 REMARK 500 8 SER B 29 49.49 -74.13 REMARK 500 8 ALA B 30 65.52 28.89 REMARK 500 8 VAL B 33 -93.24 -142.33 REMARK 500 9 ASN B 22 52.40 -154.10 REMARK 500 9 VAL B 28 171.51 50.93 REMARK 500 9 ASN B 34 178.63 55.71 REMARK 500 9 ARG B 35 -173.84 47.82 REMARK 500 10 ASN B 22 51.31 -155.08 REMARK 500 10 VAL B 28 -154.25 36.00 REMARK 500 10 SER B 29 46.37 -92.71 REMARK 500 11 ALA B 3 -40.00 -135.52 REMARK 500 11 ASN B 22 50.00 -155.14 REMARK 500 11 SER B 29 -161.36 51.97 REMARK 500 11 LYS B 31 77.08 -159.04 REMARK 500 11 ASN B 34 80.42 -67.41 REMARK 500 12 ASN B 22 52.76 -156.23 REMARK 500 12 LEU B 25 35.22 -96.93 REMARK 500 12 VAL B 28 157.36 -35.83 REMARK 500 12 ALA B 30 69.39 12.91 REMARK 500 12 ASN B 34 56.16 -101.04 REMARK 500 13 ALA B 3 -42.15 -153.74 REMARK 500 13 ASN B 22 51.22 -153.63 REMARK 500 13 VAL B 28 -157.57 -91.78 REMARK 500 13 ALA B 30 48.42 -152.75 REMARK 500 13 VAL B 33 67.49 -107.28 REMARK 500 13 ASN B 34 71.27 50.32 REMARK 500 13 ARG B 35 -57.56 -179.53 REMARK 500 14 ASN B 22 51.20 -155.59 REMARK 500 14 ALA B 30 39.29 -152.71 REMARK 500 14 LYS B 31 134.26 -174.73 REMARK 500 14 ARG B 35 83.26 53.69 REMARK 500 15 ASN B 22 51.31 -154.74 REMARK 500 15 LEU B 25 34.14 -98.03 REMARK 500 15 ALA B 30 58.63 37.36 REMARK 500 15 ASN B 34 43.11 -99.75 REMARK 500 15 ARG B 35 77.31 49.35 REMARK 500 16 ASN B 22 50.61 -153.76 REMARK 500 16 LEU B 25 34.02 -99.88 REMARK 500 16 VAL B 28 -157.63 37.98 REMARK 500 16 SER B 29 61.81 -69.76 REMARK 500 16 ALA B 30 49.08 -151.07 REMARK 500 16 VAL B 33 101.49 55.69 REMARK 500 16 ARG B 35 -58.31 -178.58 REMARK 500 17 ASN B 22 49.68 -152.87 REMARK 500 17 LEU B 25 35.75 -99.16 REMARK 500 17 VAL B 28 135.13 54.97 REMARK 500 17 SER B 29 35.75 35.95 REMARK 500 17 ALA B 30 68.09 35.03 REMARK 500 17 VAL B 33 -39.16 -140.64 REMARK 500 17 ARG B 35 96.60 -171.04 REMARK 500 18 ASN B 22 51.86 -155.02 REMARK 500 18 SER B 29 -170.79 50.28 REMARK 500 18 ALA B 30 74.08 51.04 REMARK 500 19 ALA B 3 -34.84 -140.81 REMARK 500 19 ASN B 22 50.24 -154.75 REMARK 500 19 SER B 29 -175.63 52.35 REMARK 500 19 ASN B 34 55.32 -108.10 REMARK 500 20 ALA B 3 -33.95 -176.54 REMARK 500 20 ASN B 22 50.93 -155.36 REMARK 500 20 LEU B 25 30.70 -99.58 REMARK 500 20 SER B 29 -170.03 49.58 REMARK 500 20 ASN B 34 53.85 -147.92 REMARK 500 21 ASN B 22 50.36 -153.58 REMARK 500 21 LEU B 25 33.61 -98.53 REMARK 500 21 VAL B 28 -143.78 50.90 REMARK 500 21 ALA B 30 74.35 44.32 REMARK 500 21 PRO B 32 -167.89 -76.89 REMARK 500 21 VAL B 33 -158.97 -98.60 REMARK 500 22 ASN B 22 50.12 -154.25 REMARK 500 22 LEU B 25 30.62 -97.55 REMARK 500 22 VAL B 28 40.49 33.99 REMARK 500 22 SER B 29 -157.66 -141.00 REMARK 500 22 ARG B 35 -58.37 -176.66 REMARK 500 23 ASN B 22 50.86 -154.55 REMARK 500 23 LEU B 25 34.33 -98.35 REMARK 500 23 VAL B 28 142.54 -39.19 REMARK 500 23 ALA B 30 89.13 28.93 REMARK 500 23 VAL B 33 -31.63 -173.44 REMARK 500 23 ASN B 34 66.33 -69.73 REMARK 500 24 ASN B 22 50.15 -154.59 REMARK 500 24 SER B 29 -160.28 47.88 REMARK 500 24 ALA B 30 82.56 -11.90 REMARK 500 25 ASN B 22 48.47 -153.74 REMARK 500 25 LEU B 25 37.01 -97.08 REMARK 500 25 SER B 29 -161.57 54.82 REMARK 500 25 LYS B 31 62.97 -179.82 REMARK 500 25 VAL B 33 35.22 -174.72 REMARK 500 25 ASN B 34 54.65 -105.12 REMARK 500 25 ARG B 35 59.88 -162.32 REMARK 500 26 ALA B 3 -40.98 -160.16 REMARK 500 26 ASN B 22 52.91 -155.16 REMARK 500 26 ALA B 30 44.63 -141.04 REMARK 500 27 ASN B 22 52.66 -155.67 REMARK 500 27 LYS B 31 60.35 -167.32 REMARK 500 27 VAL B 33 124.44 58.30 REMARK 500 27 ASN B 34 103.37 -53.18 REMARK 500 27 ARG B 35 -59.57 -172.01 REMARK 500 28 ASN B 22 51.40 -155.27 REMARK 500 28 ALA B 30 50.52 -146.81 REMARK 500 28 PRO B 32 -165.87 -72.56 REMARK 500 29 ASN B 22 47.86 -153.69 REMARK 500 29 VAL B 28 174.66 -51.54 REMARK 500 29 ALA B 30 58.63 29.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QFQ B 2 36 UNP P03045 REGN_LAMBD 2 36 DBREF 1QFQ A 1 15 PDB 1QFQ 1QFQ 1 15 SEQRES 1 B 35 ASP ALA GLN THR ARG ARG ARG GLU ARG ARG ALA GLU LYS SEQRES 2 B 35 GLN ALA GLN TRP LYS ALA ALA ASN PRO LEU LEU VAL GLY SEQRES 3 B 35 VAL SER ALA LYS PRO VAL ASN ARG PRO SEQRES 1 A 15 G C C C U G A A A A A G G SEQRES 2 A 15 G C HELIX 1 1 GLN B 4 ALA B 21 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 216 0 0 1 0 0 0 6 0 0 0 5 END